Wall clock time and date at job start Tue Mar 31 2020 00:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47534 * 1.69375 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 3 7 7 O 1.21273 * 120.00140 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00054 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47051 * 325.00188 * 9 8 6 11 11 C 1.53002 * 109.46916 * 84.99734 * 9 8 6 12 12 C 1.53003 * 109.47007 * 60.00440 * 11 9 8 13 13 C 1.52997 * 109.47252 * 59.99837 * 12 11 9 14 14 C 1.53004 * 109.46915 * 299.99855 * 13 12 11 15 15 H 1.09000 * 109.47250 * 300.00199 * 14 13 12 16 16 N 1.46501 * 109.46770 * 180.02562 * 14 13 12 17 17 C 1.36930 * 120.00225 * 85.00278 * 16 14 13 18 18 H 1.08000 * 120.00278 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00455 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99365 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00633 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46900 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47375 * 119.99693 * 21 19 17 24 24 H 1.48497 * 109.47543 * 240.00390 * 21 19 17 25 25 C 1.52997 * 109.47387 * 204.99924 * 9 8 6 26 26 H 4.44646 * 5.63314 * 179.97438 * 4 1 2 27 27 H 1.09002 * 109.47018 * 241.69148 * 3 2 1 28 28 H 1.08998 * 109.46895 * 121.69992 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99856 * 4 3 2 30 30 H 1.09001 * 109.46832 * 300.00046 * 4 3 2 31 31 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 33 33 H 0.97005 * 119.99680 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.46953 * 180.02562 * 11 9 8 35 35 H 1.08997 * 109.47739 * 300.00238 * 11 9 8 36 36 H 1.08999 * 109.47062 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.46949 * 299.99617 * 12 11 9 38 38 H 1.08996 * 109.47522 * 60.00455 * 13 12 11 39 39 H 1.09003 * 109.46774 * 180.02562 * 13 12 11 40 40 H 0.97006 * 119.99695 * 265.00204 * 16 14 13 41 41 H 0.97005 * 119.99816 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.47176 * 60.00036 * 25 9 8 43 43 H 1.09000 * 109.47324 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4409 -0.0426 5 6 4.6867 -1.4401 -0.0420 6 6 5.1898 -2.8601 -0.0846 7 8 4.4021 -3.7819 -0.1123 8 7 6.5150 -3.1057 -0.0910 9 6 7.0040 -4.4860 -0.1318 10 1 6.3313 -5.1268 0.4382 11 6 7.0567 -4.9655 -1.5838 12 6 8.0010 -4.0661 -2.3840 13 6 9.4031 -4.1287 -1.7749 14 6 9.3503 -3.6491 -0.3230 15 1 8.9865 -2.6220 -0.2925 16 7 10.6930 -3.7085 0.2600 17 6 11.5623 -2.6651 0.0848 18 1 11.2583 -1.7985 -0.4835 19 6 12.8344 -2.7211 0.6376 20 7 13.2048 -3.7770 1.3306 21 14 14.0205 -1.2980 0.3980 22 1 13.3668 -0.2400 -0.4135 23 1 14.4014 -0.7428 1.7216 24 1 15.2364 -1.7800 -0.3051 25 6 8.4061 -4.5486 0.4772 26 1 -1.0497 -0.0005 0.0002 27 1 3.0091 0.4882 0.9048 28 1 3.0090 0.5408 -0.8743 29 1 2.7936 -1.9284 -0.9474 30 1 2.7937 -1.9810 0.8318 31 1 5.0502 -0.8999 -0.9162 32 1 5.0495 -0.9528 0.8629 33 1 7.1449 -2.3683 -0.0685 34 1 7.4202 -5.9927 -1.6142 35 1 6.0579 -4.9210 -2.0178 36 1 8.0389 -4.4080 -3.4183 37 1 7.6372 -3.0390 -2.3536 38 1 9.7670 -5.1556 -1.8054 39 1 10.0757 -3.4875 -2.3448 40 1 10.9663 -4.4870 0.7701 41 1 14.0938 -3.8164 1.7166 42 1 8.3686 -4.2070 1.5116 43 1 8.7702 -5.5755 0.4464 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752970018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:31 Heat of formation + Delta-G solvation = -3.888925 kcal Electronic energy + Delta-G solvation = -21405.444531 eV Core-core repulsion = 18258.064736 eV Total energy + Delta-G solvation = -3147.379794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.11726 -38.08845 -35.77554 -34.46220 -33.07801 -32.42949 -31.17127 -29.82987 -28.07068 -27.62643 -23.80161 -22.99911 -21.99701 -21.05543 -20.50968 -18.82165 -18.45465 -17.27781 -16.87923 -16.11464 -15.52144 -15.33826 -14.67390 -14.42180 -14.41325 -13.84537 -13.75875 -13.42406 -13.08002 -12.87420 -12.75680 -12.36208 -12.04509 -11.89835 -11.75788 -11.66107 -11.18696 -11.02748 -10.92480 -10.78747 -10.45494 -10.39287 -10.32098 -10.19720 -10.17807 -9.76490 -9.73660 -9.54212 -8.95496 -8.83263 -7.00170 -5.80938 -3.09901 2.56783 2.61554 2.72124 3.30847 3.39642 3.45069 3.47576 4.13209 4.53567 4.64945 4.78886 4.87680 5.02598 5.09944 5.17638 5.26629 5.27111 5.38692 5.43402 5.47769 5.57630 5.68212 5.75860 5.80078 5.87291 5.90651 5.96988 6.05533 6.06945 6.10566 6.26034 6.28314 6.48678 6.55748 6.69365 6.70265 6.92087 7.06501 7.39343 7.63754 7.65544 8.32538 8.37473 9.48722 10.06460 10.40739 11.41690 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.003327 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.151185 B = 8413.304430 C = 9236.489913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.182 4.182 3 C -0.016 4.016 4 C -0.098 4.098 5 C -0.144 4.144 6 C 0.511 3.489 7 O -0.549 6.549 8 N -0.718 5.718 9 C 0.151 3.849 10 H 0.082 0.918 11 C -0.127 4.127 12 C -0.114 4.114 13 C -0.137 4.137 14 C 0.181 3.819 15 H 0.042 0.958 16 N -0.725 5.725 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.133 4.133 26 H 0.216 0.784 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.403 0.597 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.069 0.931 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.908 4.507 -3.974 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.182 4.182 3 C -0.052 4.052 4 C -0.136 4.136 5 C -0.184 4.184 6 C 0.298 3.702 7 O -0.427 6.427 8 N -0.371 5.371 9 C 0.046 3.954 10 H 0.101 0.899 11 C -0.166 4.166 12 C -0.153 4.153 13 C -0.177 4.177 14 C 0.071 3.929 15 H 0.059 0.941 16 N -0.365 5.365 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.172 4.172 26 H 0.232 0.768 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.239 0.761 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.342 4.004 -4.011 20.155 hybrid contribution 1.057 0.841 0.002 1.351 sum -18.284 4.845 -4.010 19.336 Atomic orbital electron populations 1.24892 0.96001 1.00902 1.01481 1.23144 0.94615 1.00333 1.00154 1.18799 0.84787 0.98148 1.03480 1.21257 0.93122 0.94905 1.04267 1.21699 0.97203 0.94696 1.04800 1.20621 0.82441 0.91410 0.75745 1.90680 1.55454 1.46503 1.50054 1.46252 1.06841 1.09536 1.74459 1.20932 0.95477 0.82564 0.96439 0.89947 1.21890 0.99588 0.99771 0.95309 1.21497 0.96126 0.99286 0.98364 1.22289 0.94718 1.01687 0.99054 1.20144 0.86342 0.95836 0.90587 0.94055 1.42439 1.09672 1.21551 1.62888 1.19254 0.93536 0.96669 1.27470 0.91185 1.24751 0.97767 0.97804 1.00688 1.69673 1.19794 1.28820 1.39729 0.86144 0.81300 0.81648 0.77243 1.20575 1.21887 1.21902 1.22124 0.93105 1.01952 1.00033 0.76762 0.89383 0.89416 0.90814 0.90793 0.88649 0.88574 0.76071 0.91257 0.92163 0.92921 0.92634 0.92583 0.92101 0.78258 0.93548 0.91270 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.18 -1.77 13.34 -37.12 -0.50 -2.26 16 3 C -0.02 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.10 -0.90 4.46 -26.73 -0.12 -1.02 16 5 C -0.14 -1.24 5.70 -27.88 -0.16 -1.39 16 6 C 0.51 6.39 7.79 -10.98 -0.09 6.30 16 7 O -0.55 -8.84 15.64 5.56 0.09 -8.75 16 8 N -0.72 -8.84 4.23 -53.81 -0.23 -9.07 16 9 C 0.15 2.06 2.78 -67.93 -0.19 1.87 16 10 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 11 C -0.13 -1.69 5.60 -26.73 -0.15 -1.84 16 12 C -0.11 -1.56 5.77 -26.73 -0.15 -1.72 16 13 C -0.14 -2.31 5.50 -26.73 -0.15 -2.46 16 14 C 0.18 3.27 2.60 -67.93 -0.18 3.10 16 15 H 0.04 0.74 6.44 -51.93 -0.33 0.40 16 16 N -0.73 -17.23 5.12 -53.42 -0.27 -17.50 16 17 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 21 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C -0.13 -2.06 5.08 -26.73 -0.14 -2.19 16 26 H 0.22 1.17 7.80 -54.11 -0.42 0.75 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 30 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 4.60 6.87 -40.82 -0.28 4.32 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.73 7.60 -51.93 -0.39 0.34 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.38 9.82 7.80 -40.82 -0.32 9.51 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -31.78 353.92 -8.22 -40.00 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -7.18 Total: 10.21 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.66 Total: -10.20 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.22 Total: -53.40 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.78 -8.22 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752970018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.111 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds