Wall clock time and date at job start Tue Mar 31 2020 00:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47534 * 1.69375 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 3 7 7 O 1.21273 * 120.00140 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00054 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47051 * 325.00188 * 9 8 6 11 11 C 1.53002 * 109.46916 * 84.99734 * 9 8 6 12 12 C 1.53003 * 109.47007 * 60.00440 * 11 9 8 13 13 C 1.52997 * 109.47252 * 59.99837 * 12 11 9 14 14 C 1.53004 * 109.46915 * 299.99855 * 13 12 11 15 15 H 1.09000 * 109.47250 * 300.00199 * 14 13 12 16 16 N 1.46501 * 109.46770 * 180.02562 * 14 13 12 17 17 C 1.36930 * 120.00225 * 85.00278 * 16 14 13 18 18 H 1.08000 * 120.00278 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00455 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99365 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00633 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46900 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47375 * 119.99693 * 21 19 17 24 24 H 1.48497 * 109.47543 * 240.00390 * 21 19 17 25 25 C 1.52997 * 109.47387 * 204.99924 * 9 8 6 26 26 H 4.44646 * 5.63314 * 179.97438 * 4 1 2 27 27 H 1.09002 * 109.47018 * 241.69148 * 3 2 1 28 28 H 1.08998 * 109.46895 * 121.69992 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99856 * 4 3 2 30 30 H 1.09001 * 109.46832 * 300.00046 * 4 3 2 31 31 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 33 33 H 0.97005 * 119.99680 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.46953 * 180.02562 * 11 9 8 35 35 H 1.08997 * 109.47739 * 300.00238 * 11 9 8 36 36 H 1.08999 * 109.47062 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.46949 * 299.99617 * 12 11 9 38 38 H 1.08996 * 109.47522 * 60.00455 * 13 12 11 39 39 H 1.09003 * 109.46774 * 180.02562 * 13 12 11 40 40 H 0.97006 * 119.99695 * 265.00204 * 16 14 13 41 41 H 0.97005 * 119.99816 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.47176 * 60.00036 * 25 9 8 43 43 H 1.09000 * 109.47324 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4409 -0.0426 5 6 4.6867 -1.4401 -0.0420 6 6 5.1898 -2.8601 -0.0846 7 8 4.4021 -3.7819 -0.1123 8 7 6.5150 -3.1057 -0.0910 9 6 7.0040 -4.4860 -0.1318 10 1 6.3313 -5.1268 0.4382 11 6 7.0567 -4.9655 -1.5838 12 6 8.0010 -4.0661 -2.3840 13 6 9.4031 -4.1287 -1.7749 14 6 9.3503 -3.6491 -0.3230 15 1 8.9865 -2.6220 -0.2925 16 7 10.6930 -3.7085 0.2600 17 6 11.5623 -2.6651 0.0848 18 1 11.2583 -1.7985 -0.4835 19 6 12.8344 -2.7211 0.6376 20 7 13.2048 -3.7770 1.3306 21 14 14.0205 -1.2980 0.3980 22 1 13.3668 -0.2400 -0.4135 23 1 14.4014 -0.7428 1.7216 24 1 15.2364 -1.7800 -0.3051 25 6 8.4061 -4.5486 0.4772 26 1 -1.0497 -0.0005 0.0002 27 1 3.0091 0.4882 0.9048 28 1 3.0090 0.5408 -0.8743 29 1 2.7936 -1.9284 -0.9474 30 1 2.7937 -1.9810 0.8318 31 1 5.0502 -0.8999 -0.9162 32 1 5.0495 -0.9528 0.8629 33 1 7.1449 -2.3683 -0.0685 34 1 7.4202 -5.9927 -1.6142 35 1 6.0579 -4.9210 -2.0178 36 1 8.0389 -4.4080 -3.4183 37 1 7.6372 -3.0390 -2.3536 38 1 9.7670 -5.1556 -1.8054 39 1 10.0757 -3.4875 -2.3448 40 1 10.9663 -4.4870 0.7701 41 1 14.0938 -3.8164 1.7166 42 1 8.3686 -4.2070 1.5116 43 1 8.7702 -5.5755 0.4464 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752970018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:31 Heat of formation + Delta-G solvation = -23.001815 kcal Electronic energy + Delta-G solvation = -21406.273328 eV Core-core repulsion = 18258.064736 eV Total energy + Delta-G solvation = -3148.208592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20886 -39.30644 -36.53360 -36.04639 -34.39183 -33.22801 -32.84940 -30.99641 -29.56580 -28.49848 -25.67531 -23.93123 -23.15832 -22.44483 -21.46868 -20.07455 -19.21008 -19.02805 -17.90236 -16.98370 -16.73996 -16.63231 -16.16111 -15.57292 -15.41697 -15.09330 -14.97860 -14.76785 -14.48686 -13.93563 -13.65460 -13.56658 -13.26645 -13.03328 -12.98609 -12.87770 -12.79787 -12.43120 -12.18277 -12.00175 -11.93714 -11.89498 -11.58158 -11.44050 -11.14606 -10.98138 -10.94727 -10.83077 -10.75711 -9.95027 -8.96719 -7.90943 -5.18739 1.49700 1.50272 1.59693 1.75420 1.87569 1.94856 2.35549 2.58655 3.42926 3.54927 3.66873 3.85826 3.91167 3.95160 4.12891 4.21613 4.31873 4.33391 4.38404 4.55440 4.58895 4.68794 4.70815 4.74565 4.75944 4.83993 4.85370 5.00585 5.12963 5.20173 5.23530 5.23745 5.25137 5.35901 5.39518 5.53330 5.55239 5.60007 5.70317 6.31500 6.65867 6.74356 7.35244 7.37523 8.14560 8.36305 9.32915 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.003327 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.151185 B = 8413.304430 C = 9236.489913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.216 4.216 3 C -0.012 4.012 4 C -0.091 4.091 5 C -0.136 4.136 6 C 0.509 3.491 7 O -0.589 6.589 8 N -0.715 5.715 9 C 0.158 3.842 10 H 0.076 0.924 11 C -0.121 4.121 12 C -0.103 4.103 13 C -0.128 4.128 14 C 0.178 3.822 15 H 0.051 0.949 16 N -0.739 5.739 17 C -0.229 4.229 18 H 0.079 0.921 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.299 1.299 25 C -0.121 4.121 26 H 0.240 0.760 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.410 0.590 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.371 0.629 41 H 0.248 0.752 42 H 0.062 0.938 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.022 6.292 -4.914 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.216 4.216 3 C -0.049 4.049 4 C -0.129 4.129 5 C -0.175 4.175 6 C 0.297 3.703 7 O -0.469 6.469 8 N -0.367 5.367 9 C 0.053 3.947 10 H 0.094 0.906 11 C -0.160 4.160 12 C -0.141 4.141 13 C -0.169 4.169 14 C 0.070 3.930 15 H 0.069 0.931 16 N -0.378 5.378 17 C -0.361 4.361 18 H 0.097 0.903 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.224 1.224 24 H -0.227 1.227 25 C -0.159 4.159 26 H 0.256 0.744 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.247 0.753 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.202 0.798 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.495 5.826 -4.984 21.882 hybrid contribution 1.293 0.250 0.275 1.345 sum -19.202 6.076 -4.709 20.684 Atomic orbital electron populations 1.25695 0.97080 1.00108 1.00935 1.23833 0.95829 1.01110 1.00823 1.18856 0.83824 0.97112 1.05065 1.21144 0.93648 0.95704 1.02422 1.21736 0.96458 0.92197 1.07137 1.21306 0.81868 0.92667 0.74440 1.90669 1.56303 1.48129 1.51834 1.46209 1.07174 1.09040 1.74270 1.20748 0.93903 0.83542 0.96540 0.90584 1.21836 0.99457 0.99976 0.94708 1.21398 0.93786 1.00138 0.98799 1.22119 0.96487 1.00415 0.97851 1.20378 0.84259 0.97071 0.91340 0.93095 1.42678 1.11482 1.20482 1.63121 1.19649 0.93722 0.97129 1.25628 0.90283 1.25528 0.99767 1.00274 1.01630 1.69827 1.19846 1.30936 1.41699 0.85140 0.78936 0.79276 0.76850 1.18679 1.22383 1.22660 1.21957 0.93580 1.01100 0.99312 0.74400 0.87821 0.87656 0.92600 0.92820 0.85979 0.86278 0.75294 0.90845 0.92073 0.91570 0.91540 0.93693 0.93884 0.79765 0.94279 0.91975 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.64 19.25 74.32 1.43 -2.21 16 2 C -0.22 -3.92 13.34 31.13 0.42 -3.51 16 3 C -0.01 -0.16 5.70 28.79 0.16 0.00 16 4 C -0.09 -1.55 4.46 30.59 0.14 -1.41 16 5 C -0.14 -1.95 5.70 29.85 0.17 -1.78 16 6 C 0.51 11.78 7.79 87.66 0.68 12.47 16 7 O -0.59 -18.52 15.64 -3.01 -0.05 -18.57 16 8 N -0.71 -16.10 4.23 -442.55 -1.87 -17.97 16 9 C 0.16 4.09 2.78 44.99 0.13 4.21 16 10 H 0.08 2.13 7.58 -2.39 -0.02 2.11 16 11 C -0.12 -2.99 5.60 30.60 0.17 -2.82 16 12 C -0.10 -2.57 5.77 30.59 0.18 -2.39 16 13 C -0.13 -4.17 5.50 30.59 0.17 -4.00 16 14 C 0.18 6.23 2.60 44.99 0.12 6.35 16 15 H 0.05 1.70 6.44 -2.39 -0.02 1.69 16 16 N -0.74 -35.00 5.12 -322.93 -1.65 -36.65 16 17 C -0.23 -12.04 9.93 84.03 0.83 -11.21 16 18 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 19 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 20 N -0.97 -58.46 13.06 21.65 0.28 -58.18 16 21 Si 0.97 44.85 29.55 68.60 2.03 46.88 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 25 C -0.12 -3.62 5.08 30.59 0.16 -3.47 16 26 H 0.24 2.20 7.80 -4.43 -0.03 2.17 16 27 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 30 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 31 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.41 8.22 6.87 -92.70 -0.64 7.59 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.53 7.60 -2.39 -0.02 1.52 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.37 19.29 7.80 -92.70 -0.72 18.57 16 41 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -68.93 353.92 3.58 -65.35 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.37 Total: 32.89 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 5.21 Total: -13.76 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -3.24 Total: -112.79 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.93 3.58 -65.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752970018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.353 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds