Wall clock time and date at job start Tue Mar 31 2020 00:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47103 * 119.99981 * 2 1 4 4 O 1.21610 * 120.00389 * 179.97438 * 3 2 1 5 5 N 1.34782 * 119.99813 * 359.97438 * 3 2 1 6 6 C 1.46497 * 120.00030 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47376 * 180.02562 * 6 5 3 8 8 H 1.09004 * 110.88723 * 54.29817 * 7 6 5 9 9 C 1.55154 * 111.00881 * 178.18157 * 7 6 5 10 10 C 1.54325 * 102.94556 * 153.57545 * 9 7 6 11 11 N 1.47017 * 107.27020 * 337.80781 * 10 9 7 12 12 C 1.36938 * 125.65063 * 178.90572 * 11 10 9 13 13 H 1.08000 * 120.00499 * 174.88021 * 12 11 10 14 14 C 1.38812 * 119.99858 * 354.87732 * 12 11 10 15 15 N 1.31629 * 119.99939 * 7.06671 * 14 12 11 16 16 Si 1.86798 * 120.00349 * 187.06403 * 14 12 11 17 17 H 1.48497 * 109.47067 * 94.98756 * 16 14 12 18 18 H 1.48500 * 109.47167 * 214.99334 * 16 14 12 19 19 H 1.48505 * 109.46689 * 334.98617 * 16 14 12 20 20 C 1.47473 * 108.72211 * 358.97584 * 11 10 9 21 21 C 1.32993 * 120.00258 * 179.97438 * 2 1 3 22 22 C 1.51582 * 135.78201 * 359.97438 * 21 2 1 23 23 C 1.53833 * 86.85927 * 205.20727 * 22 21 2 24 24 C 1.51882 * 135.89282 * 180.02562 * 21 2 1 25 25 H 1.09003 * 109.47395 * 269.99734 * 1 2 3 26 26 H 1.09003 * 109.47499 * 30.00208 * 1 2 3 27 27 H 1.09005 * 109.47001 * 150.00050 * 1 2 3 28 28 H 0.97000 * 119.99955 * 0.02562 * 5 3 2 29 29 H 1.09004 * 109.47374 * 300.00645 * 6 5 3 30 30 H 1.09002 * 109.46934 * 60.00290 * 6 5 3 31 31 H 1.09000 * 110.72082 * 271.94462 * 9 7 6 32 32 H 1.09000 * 110.71766 * 35.03679 * 9 7 6 33 33 H 1.08998 * 109.87899 * 97.22898 * 10 9 7 34 34 H 1.09002 * 109.88021 * 218.38989 * 10 9 7 35 35 H 0.96995 * 119.99758 * 179.97438 * 15 14 12 36 36 H 1.09005 * 110.34823 * 265.24839 * 20 11 10 37 37 H 1.09007 * 110.40593 * 142.91450 * 20 11 10 38 38 H 1.09003 * 113.66241 * 90.69102 * 22 21 2 39 39 H 1.08996 * 113.67070 * 319.72422 * 22 21 2 40 40 H 1.09002 * 113.66003 * 89.64585 * 23 22 21 41 41 H 1.09004 * 113.65597 * 220.68922 * 23 22 21 42 42 H 1.09004 * 113.66527 * 40.32577 * 24 21 2 43 43 H 1.08991 * 113.74658 * 269.26782 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2740 0.0005 5 7 1.5685 2.4412 -0.0005 6 6 2.3009 3.7099 0.0000 7 6 1.3067 4.8728 -0.0001 8 1 0.6022 4.7818 0.8266 9 6 2.0456 6.2363 0.0465 10 6 1.0428 7.1961 -0.6278 11 7 0.1488 6.3787 -1.4609 12 6 -0.8965 6.8496 -2.2097 13 1 -1.4445 6.1784 -2.8544 14 6 -1.2518 8.1896 -2.1402 15 7 -0.5020 9.0352 -1.4652 16 14 -2.7940 8.7932 -3.0045 17 1 -3.9260 8.8087 -2.0435 18 1 -2.5658 10.1659 -3.5230 19 1 -3.1159 7.8846 -4.1341 20 6 0.5629 4.9672 -1.3556 21 6 2.1720 -1.1517 0.0005 22 6 1.7997 -2.6211 0.0016 23 6 3.1679 -2.8803 0.6555 24 6 3.6327 -1.5676 0.0012 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 0.5985 2.4411 -0.0005 29 1 2.9270 3.7677 0.8905 30 1 2.9282 3.7677 -0.8895 31 1 2.2347 6.5375 1.0768 32 1 2.9773 6.1894 -0.5173 33 1 0.4641 7.7213 0.1321 34 1 1.5775 7.9132 -1.2508 35 1 -0.7502 9.9716 -1.4170 36 1 1.2329 4.7066 -2.1750 37 1 -0.3098 4.3141 -1.3557 38 1 1.7036 -3.0488 -0.9963 39 1 0.9542 -2.8579 0.6475 40 1 3.1463 -2.8429 1.7446 41 1 3.6761 -3.7644 0.2706 42 1 4.2617 -0.9552 0.6474 43 1 4.0518 -1.7002 -0.9962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753124296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:56 Heat of formation + Delta-G solvation = 16.408124 kcal Electronic energy + Delta-G solvation = -21411.686710 eV Core-core repulsion = 18265.187061 eV Total energy + Delta-G solvation = -3146.499648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00459 -38.49590 -37.49558 -34.62791 -33.35285 -32.26436 -29.74066 -28.23675 -26.76666 -25.82059 -25.53675 -23.93120 -22.60357 -20.64056 -19.92689 -19.88125 -18.19907 -16.84097 -16.49685 -16.06429 -15.78933 -15.34070 -14.71994 -14.53577 -14.20041 -13.84480 -13.50172 -13.30221 -12.88463 -12.66745 -12.58668 -12.32594 -12.10321 -12.00365 -11.78794 -11.72382 -11.34991 -11.15689 -10.89515 -10.80690 -10.73145 -10.35178 -10.12576 -9.98848 -9.85663 -9.67197 -9.55384 -9.08922 -8.78416 -8.57560 -6.82692 -5.72495 -3.04777 1.26916 3.27097 3.32307 3.39712 3.44791 3.47051 4.21732 4.28253 4.49440 4.50398 4.83828 4.86457 5.07230 5.14707 5.25783 5.31915 5.41025 5.43458 5.45898 5.51154 5.54646 5.58308 5.68217 5.71492 5.87091 5.91786 5.99828 6.03697 6.08886 6.16391 6.35987 6.49437 6.51611 6.53788 6.55211 6.71896 6.92713 7.55980 7.64427 7.65828 7.82819 8.26142 8.34440 9.21917 9.82563 10.49309 11.39720 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032918 B = 0.003149 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.397326 B = 8889.428433 C = 9542.024682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.165 4.165 3 C 0.554 3.446 4 O -0.547 6.547 5 N -0.721 5.721 6 C 0.133 3.867 7 C -0.118 4.118 8 H 0.079 0.921 9 C -0.134 4.134 10 C 0.177 3.823 11 N -0.607 5.607 12 C -0.230 4.230 13 H 0.077 0.923 14 C -0.008 4.008 15 N -0.920 5.920 16 Si 0.910 3.090 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C 0.142 3.858 21 C -0.074 4.074 22 C -0.106 4.106 23 C -0.142 4.142 24 C -0.101 4.101 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.401 0.599 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.252 0.748 36 H 0.019 0.981 37 H 0.035 0.965 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -20.982 5.333 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.168 4.168 3 C 0.342 3.658 4 O -0.426 6.426 5 N -0.373 5.373 6 C 0.010 3.990 7 C -0.138 4.138 8 H 0.097 0.903 9 C -0.173 4.173 10 C 0.052 3.948 11 N -0.333 5.333 12 C -0.358 4.358 13 H 0.095 0.905 14 C -0.204 4.204 15 N -0.567 5.567 16 Si 0.741 3.259 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.206 1.206 20 C 0.016 3.984 21 C -0.076 4.076 22 C -0.143 4.143 23 C -0.179 4.179 24 C -0.138 4.138 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.237 0.763 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.054 0.946 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.010 -20.729 5.281 21.970 hybrid contribution -1.349 0.523 -0.437 1.511 sum 3.661 -20.206 4.844 21.098 Atomic orbital electron populations 1.20696 0.90495 1.03124 1.02471 1.20550 0.95911 0.91505 1.08796 1.18231 0.87194 0.83866 0.76522 1.90752 1.13549 1.87820 1.50479 1.46022 1.10668 1.05787 1.74779 1.21385 0.94416 0.81296 1.01948 1.22613 0.97265 0.93898 0.99991 0.90255 1.22850 0.99112 0.94854 1.00525 1.21152 0.89374 0.90825 0.93458 1.44499 1.34278 1.00391 1.54127 1.19059 1.05375 0.93172 1.18175 0.90469 1.24829 0.99067 0.96054 1.00468 1.69985 1.37881 1.02828 1.46046 0.86121 0.82998 0.78047 0.78762 1.21627 1.21767 1.20637 1.21584 0.95713 0.88152 0.92947 1.23403 0.97871 0.93546 0.92751 1.22327 0.98370 0.91821 1.01746 1.22824 0.96464 0.98152 1.00450 1.22316 0.93936 0.95684 1.01847 0.91109 0.91215 0.91244 0.76308 0.91741 0.91385 0.92002 0.92209 0.93417 0.94087 0.93754 0.96339 0.94632 0.88337 0.90453 0.89900 0.90697 0.89548 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.56 36.00 0.34 -0.63 16 2 C -0.16 -1.91 6.00 -102.85 -0.62 -2.53 16 3 C 0.55 8.06 7.75 -12.66 -0.10 7.96 16 4 O -0.55 -9.63 15.12 5.27 0.08 -9.55 16 5 N -0.72 -9.82 5.39 -61.49 -0.33 -10.15 16 6 C 0.13 2.00 5.12 -4.05 -0.02 1.98 16 7 C -0.12 -1.99 3.07 -88.48 -0.27 -2.26 16 8 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 9 C -0.13 -2.48 6.42 -24.90 -0.16 -2.64 16 10 C 0.18 4.29 5.38 -3.07 -0.02 4.27 16 11 N -0.61 -15.50 3.40 -170.03 -0.58 -16.07 16 12 C -0.23 -6.41 10.27 -15.06 -0.15 -6.57 16 13 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 14 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 15 N -0.92 -27.15 10.36 55.49 0.57 -26.58 16 16 Si 0.91 22.08 29.56 -169.99 -5.02 17.06 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.14 2.88 6.56 -2.50 -0.02 2.87 16 21 C -0.07 -0.78 6.57 -100.21 -0.66 -1.44 16 22 C -0.11 -0.78 7.76 -27.02 -0.21 -0.99 16 23 C -0.14 -1.05 8.11 -25.91 -0.21 -1.26 16 24 C -0.10 -1.02 7.07 -26.85 -0.19 -1.21 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 27 H 0.07 0.52 7.88 -51.93 -0.41 0.11 16 28 H 0.40 4.76 6.53 -40.82 -0.27 4.49 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 33 H 0.05 1.28 7.30 -51.93 -0.38 0.90 16 34 H 0.04 1.11 7.61 -51.93 -0.40 0.71 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.02 0.39 7.96 -51.93 -0.41 -0.02 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 1.03 7.50 -51.93 -0.39 0.64 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -32.42 345.38 -9.66 -42.08 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.21 Total: 0.77 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.37 Total: -2.76 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.33 Total: -52.81 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.42 -9.66 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753124296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.486 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds