Wall clock time and date at job start Tue Mar 31 2020 00:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47103 * 119.99981 * 2 1 4 4 O 1.21610 * 120.00389 * 179.97438 * 3 2 1 5 5 N 1.34782 * 119.99813 * 359.97438 * 3 2 1 6 6 C 1.46497 * 120.00030 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47376 * 180.02562 * 6 5 3 8 8 H 1.09004 * 110.88723 * 54.29817 * 7 6 5 9 9 C 1.55154 * 111.00881 * 178.18157 * 7 6 5 10 10 C 1.54325 * 102.94556 * 153.57545 * 9 7 6 11 11 N 1.47017 * 107.27020 * 337.80781 * 10 9 7 12 12 C 1.36938 * 125.65063 * 178.90572 * 11 10 9 13 13 H 1.08000 * 120.00499 * 174.88021 * 12 11 10 14 14 C 1.38812 * 119.99858 * 354.87732 * 12 11 10 15 15 N 1.31629 * 119.99939 * 7.06671 * 14 12 11 16 16 Si 1.86798 * 120.00349 * 187.06403 * 14 12 11 17 17 H 1.48497 * 109.47067 * 94.98756 * 16 14 12 18 18 H 1.48500 * 109.47167 * 214.99334 * 16 14 12 19 19 H 1.48505 * 109.46689 * 334.98617 * 16 14 12 20 20 C 1.47473 * 108.72211 * 358.97584 * 11 10 9 21 21 C 1.32993 * 120.00258 * 179.97438 * 2 1 3 22 22 C 1.51582 * 135.78201 * 359.97438 * 21 2 1 23 23 C 1.53833 * 86.85927 * 205.20727 * 22 21 2 24 24 C 1.51882 * 135.89282 * 180.02562 * 21 2 1 25 25 H 1.09003 * 109.47395 * 269.99734 * 1 2 3 26 26 H 1.09003 * 109.47499 * 30.00208 * 1 2 3 27 27 H 1.09005 * 109.47001 * 150.00050 * 1 2 3 28 28 H 0.97000 * 119.99955 * 0.02562 * 5 3 2 29 29 H 1.09004 * 109.47374 * 300.00645 * 6 5 3 30 30 H 1.09002 * 109.46934 * 60.00290 * 6 5 3 31 31 H 1.09000 * 110.72082 * 271.94462 * 9 7 6 32 32 H 1.09000 * 110.71766 * 35.03679 * 9 7 6 33 33 H 1.08998 * 109.87899 * 97.22898 * 10 9 7 34 34 H 1.09002 * 109.88021 * 218.38989 * 10 9 7 35 35 H 0.96995 * 119.99758 * 179.97438 * 15 14 12 36 36 H 1.09005 * 110.34823 * 265.24839 * 20 11 10 37 37 H 1.09007 * 110.40593 * 142.91450 * 20 11 10 38 38 H 1.09003 * 113.66241 * 90.69102 * 22 21 2 39 39 H 1.08996 * 113.67070 * 319.72422 * 22 21 2 40 40 H 1.09002 * 113.66003 * 89.64585 * 23 22 21 41 41 H 1.09004 * 113.65597 * 220.68922 * 23 22 21 42 42 H 1.09004 * 113.66527 * 40.32577 * 24 21 2 43 43 H 1.08991 * 113.74658 * 269.26782 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2740 0.0005 5 7 1.5685 2.4412 -0.0005 6 6 2.3009 3.7099 0.0000 7 6 1.3067 4.8728 -0.0001 8 1 0.6022 4.7818 0.8266 9 6 2.0456 6.2363 0.0465 10 6 1.0428 7.1961 -0.6278 11 7 0.1488 6.3787 -1.4609 12 6 -0.8965 6.8496 -2.2097 13 1 -1.4445 6.1784 -2.8544 14 6 -1.2518 8.1896 -2.1402 15 7 -0.5020 9.0352 -1.4652 16 14 -2.7940 8.7932 -3.0045 17 1 -3.9260 8.8087 -2.0435 18 1 -2.5658 10.1659 -3.5230 19 1 -3.1159 7.8846 -4.1341 20 6 0.5629 4.9672 -1.3556 21 6 2.1720 -1.1517 0.0005 22 6 1.7997 -2.6211 0.0016 23 6 3.1679 -2.8803 0.6555 24 6 3.6327 -1.5676 0.0012 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 0.5985 2.4411 -0.0005 29 1 2.9270 3.7677 0.8905 30 1 2.9282 3.7677 -0.8895 31 1 2.2347 6.5375 1.0768 32 1 2.9773 6.1894 -0.5173 33 1 0.4641 7.7213 0.1321 34 1 1.5775 7.9132 -1.2508 35 1 -0.7502 9.9716 -1.4170 36 1 1.2329 4.7066 -2.1750 37 1 -0.3098 4.3141 -1.3557 38 1 1.7036 -3.0488 -0.9963 39 1 0.9542 -2.8579 0.6475 40 1 3.1463 -2.8429 1.7446 41 1 3.6761 -3.7644 0.2706 42 1 4.2617 -0.9552 0.6474 43 1 4.0518 -1.7002 -0.9962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753124296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:55 Heat of formation + Delta-G solvation = -3.338819 kcal Electronic energy + Delta-G solvation = -21412.543001 eV Core-core repulsion = 18265.187061 eV Total energy + Delta-G solvation = -3147.355940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04832 -39.56160 -38.89615 -36.03610 -34.58248 -33.73392 -31.54119 -29.86535 -27.49870 -27.32194 -26.41958 -25.50761 -23.61839 -22.06448 -21.45456 -21.19317 -19.29722 -18.71110 -17.41434 -17.29495 -16.78272 -16.63067 -16.36226 -15.84929 -15.60626 -15.12291 -14.68821 -14.55604 -14.01065 -13.91968 -13.78052 -13.41426 -13.31175 -13.28451 -13.01599 -12.80557 -12.76727 -12.64908 -12.41996 -12.01066 -11.93894 -11.87079 -11.81745 -11.56060 -11.47853 -11.41446 -10.68890 -10.65910 -10.15458 -9.69984 -8.90109 -7.86452 -5.21008 0.38745 1.46123 1.47945 1.56928 2.21006 2.28182 2.49544 3.31521 3.44236 3.57647 3.60241 3.80422 3.85334 4.00464 4.01191 4.04891 4.27412 4.42031 4.45186 4.60587 4.67465 4.75451 4.76708 4.78840 4.83501 4.85129 4.90773 5.03324 5.04685 5.05794 5.06721 5.11221 5.34757 5.37691 5.39007 5.46137 5.48355 5.66525 5.75633 5.77219 6.19695 6.59645 7.09826 7.25391 7.77472 8.42577 9.24769 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032918 B = 0.003149 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.397326 B = 8889.428433 C = 9542.024682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.185 4.185 3 C 0.547 3.453 4 O -0.585 6.585 5 N -0.715 5.715 6 C 0.145 3.855 7 C -0.095 4.095 8 H 0.090 0.910 9 C -0.123 4.123 10 C 0.183 3.817 11 N -0.629 5.629 12 C -0.243 4.243 13 H 0.083 0.917 14 C -0.067 4.067 15 N -0.951 5.951 16 Si 0.979 3.021 17 H -0.285 1.285 18 H -0.297 1.297 19 H -0.267 1.267 20 C 0.139 3.861 21 C -0.079 4.079 22 C -0.093 4.093 23 C -0.131 4.131 24 C -0.116 4.116 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.411 0.589 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.015 0.985 34 H 0.002 0.998 35 H 0.247 0.753 36 H 0.016 0.984 37 H 0.050 0.950 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -23.659 5.567 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.338 3.662 4 O -0.468 6.468 5 N -0.367 5.367 6 C 0.021 3.979 7 C -0.115 4.115 8 H 0.108 0.892 9 C -0.161 4.161 10 C 0.057 3.943 11 N -0.355 5.355 12 C -0.372 4.372 13 H 0.101 0.899 14 C -0.260 4.260 15 N -0.600 5.600 16 Si 0.807 3.193 17 H -0.212 1.212 18 H -0.223 1.223 19 H -0.191 1.191 20 C 0.014 3.986 21 C -0.081 4.081 22 C -0.130 4.130 23 C -0.168 4.168 24 C -0.152 4.152 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.249 0.751 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.134 0.866 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.924 -23.446 5.514 24.403 hybrid contribution -0.935 1.315 -0.538 1.700 sum 2.989 -22.132 4.976 22.880 Atomic orbital electron populations 1.20715 0.88331 1.03861 1.03370 1.20617 0.97316 0.90204 1.10624 1.18798 0.86950 0.84932 0.75564 1.90731 1.15271 1.88397 1.52384 1.45930 1.11130 1.05171 1.74466 1.21135 0.93735 0.81220 1.01815 1.22413 0.97120 0.93702 0.98262 0.89181 1.22718 0.97891 0.94163 1.01367 1.20924 0.89683 0.91512 0.92133 1.44831 1.34061 1.02784 1.53870 1.19476 1.05905 0.93548 1.18304 0.89869 1.25697 1.02095 0.96383 1.01842 1.70208 1.39435 1.02677 1.47709 0.85057 0.79152 0.77122 0.78002 1.21211 1.22335 1.19141 1.21749 0.96501 0.85694 0.94687 1.23902 0.98317 0.95134 0.90731 1.22387 0.98799 0.88835 1.02973 1.22803 0.96382 0.97139 1.00483 1.22434 0.93684 0.97292 1.01831 0.90074 0.91324 0.89654 0.75138 0.90978 0.92514 0.89585 0.91159 0.96638 0.97996 0.94404 0.96610 0.93222 0.86643 0.88762 0.89707 0.88773 0.92169 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.56 71.23 0.68 -0.90 16 2 C -0.18 -4.00 6.00 -18.71 -0.11 -4.11 16 3 C 0.55 15.52 7.75 86.57 0.67 16.19 16 4 O -0.59 -20.73 15.12 -4.06 -0.06 -20.79 16 5 N -0.72 -18.46 5.39 -466.72 -2.52 -20.98 16 6 C 0.15 4.15 5.12 86.38 0.44 4.59 16 7 C -0.10 -3.07 3.07 -9.41 -0.03 -3.10 16 8 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 9 C -0.12 -4.43 6.42 31.78 0.20 -4.22 16 10 C 0.18 9.10 5.38 86.73 0.47 9.57 16 11 N -0.63 -32.43 3.40 -691.87 -2.35 -34.78 16 12 C -0.24 -13.70 10.27 84.03 0.86 -12.83 16 13 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 14 C -0.07 -3.86 5.48 84.86 0.46 -3.39 16 15 N -0.95 -57.91 10.36 21.65 0.22 -57.68 16 16 Si 0.98 45.81 29.56 68.60 2.03 47.84 16 17 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 C 0.14 5.50 6.56 86.84 0.57 6.07 16 21 C -0.08 -1.54 6.57 -17.00 -0.11 -1.65 16 22 C -0.09 -1.07 7.76 30.41 0.24 -0.84 16 23 C -0.13 -1.61 8.11 31.13 0.25 -1.35 16 24 C -0.12 -2.25 7.07 30.52 0.22 -2.04 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.02 6.70 -2.39 -0.02 1.00 16 27 H 0.08 0.99 7.88 -2.38 -0.02 0.98 16 28 H 0.41 8.95 6.53 -92.71 -0.61 8.34 16 29 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 31 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 33 H 0.02 0.86 7.30 -2.39 -0.02 0.84 16 34 H 0.00 0.10 7.61 -2.39 -0.02 0.08 16 35 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.02 0.65 7.96 -2.38 -0.02 0.63 16 37 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.06 1.48 7.50 -2.38 -0.02 1.46 16 43 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -72.32 345.38 2.52 -69.80 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.38 Total: 14.61 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 4.81 Total: 1.99 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -4.64 Total: -113.44 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.06 Total: -20.79 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -72.32 2.52 -69.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753124296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.457 kcal (2) G-P(sol) polarization free energy of solvation -72.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds