Wall clock time and date at job start Tue Mar 31 2020 00:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47102 * 120.00407 * 2 1 4 4 O 1.21613 * 120.00232 * 180.02562 * 3 2 1 5 5 N 1.34777 * 119.99517 * 359.97438 * 3 2 1 6 6 C 1.46499 * 119.99665 * 179.72418 * 5 3 2 7 7 C 1.53004 * 109.47198 * 180.27868 * 6 5 3 8 8 H 1.08999 * 110.64108 * 305.70248 * 7 6 5 9 9 C 1.55160 * 110.72168 * 182.55897 * 7 6 5 10 10 C 1.54907 * 101.57928 * 206.13501 * 9 7 6 11 11 N 1.47415 * 104.83512 * 37.01131 * 10 9 7 12 12 C 1.36944 * 125.65004 * 155.90235 * 11 10 9 13 13 H 1.08003 * 120.00054 * 179.97438 * 12 11 10 14 14 C 1.38804 * 120.00091 * 359.97438 * 12 11 10 15 15 N 1.31627 * 119.99670 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00401 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46880 * 59.99550 * 16 14 12 18 18 H 1.48501 * 109.47549 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47147 * 299.99882 * 16 14 12 20 20 C 1.47319 * 108.73600 * 335.71407 * 11 10 9 21 21 C 1.33000 * 119.99968 * 179.97438 * 2 1 3 22 22 C 1.51407 * 136.31725 * 179.62601 * 21 2 1 23 23 C 1.53379 * 87.51662 * 206.06031 * 22 21 2 24 24 C 1.51398 * 136.31518 * 0.02562 * 21 2 1 25 25 H 1.09007 * 109.47059 * 89.99980 * 1 2 3 26 26 H 1.08997 * 109.47347 * 209.99731 * 1 2 3 27 27 H 1.08998 * 109.47012 * 330.00455 * 1 2 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 5 3 2 29 29 H 1.09009 * 109.47454 * 300.27637 * 6 5 3 30 30 H 1.08998 * 109.47492 * 60.27932 * 6 5 3 31 31 H 1.09003 * 111.00252 * 324.20668 * 9 7 6 32 32 H 1.09003 * 111.00323 * 88.02029 * 9 7 6 33 33 H 1.09006 * 110.36724 * 155.84894 * 10 9 7 34 34 H 1.08998 * 110.36373 * 278.05592 * 10 9 7 35 35 H 0.97003 * 120.00076 * 180.02562 * 15 14 12 36 36 H 1.09005 * 110.06502 * 241.87345 * 20 11 10 37 37 H 1.09004 * 109.85120 * 120.61535 * 20 11 10 38 38 H 1.08991 * 113.56196 * 320.64634 * 22 21 2 39 39 H 1.08997 * 113.55582 * 91.37727 * 22 21 2 40 40 H 1.09004 * 113.96669 * 220.29141 * 23 22 21 41 41 H 1.09001 * 113.70898 * 88.81033 * 23 22 21 42 42 H 1.08999 * 113.56763 * 268.62886 * 24 21 2 43 43 H 1.09007 * 113.56117 * 39.28468 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.4587 1.2739 -0.0005 5 7 1.5687 2.4411 -0.0005 6 6 2.3012 3.7098 0.0056 7 6 1.3070 4.8728 0.0106 8 1 0.6051 4.7818 -0.8184 9 6 2.0523 6.2324 -0.0477 10 6 1.0300 7.1767 0.6327 11 7 0.4262 6.3681 1.7072 12 6 -0.1619 6.8600 2.8419 13 1 -0.5775 6.1816 3.5723 14 6 -0.2238 8.2304 3.0534 15 7 0.2832 9.0571 2.1634 16 14 -1.0266 8.9015 4.6007 17 1 -0.3085 8.3864 5.7942 18 1 -0.9635 10.3851 4.5877 19 1 -2.4455 8.4664 4.6508 20 6 0.5558 4.9430 1.3568 21 6 2.1720 -1.1518 0.0005 22 6 3.6250 -1.5772 -0.0061 23 6 3.1707 -2.8821 -0.6719 24 6 1.8138 -2.6228 0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 0.5987 2.4412 -0.0005 29 1 2.9276 3.7635 0.8961 30 1 2.9282 3.7717 -0.8839 31 1 2.9833 6.1921 0.5177 32 1 2.2366 6.5330 -1.0791 33 1 1.5369 8.0461 1.0514 34 1 0.2690 7.4900 -0.0820 35 1 0.2403 10.0149 2.3113 36 1 -0.4312 4.4918 1.2545 37 1 1.1254 4.4228 2.1269 38 1 4.2566 -0.9606 -0.6455 39 1 4.0420 -1.7190 0.9909 40 1 3.6834 -3.7700 -0.3017 41 1 3.1393 -2.8311 -1.7603 42 1 1.7335 -3.0517 0.9996 43 1 0.9595 -2.8633 -0.6322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753124297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:59 Heat of formation + Delta-G solvation = 19.043071 kcal Electronic energy + Delta-G solvation = -21426.259092 eV Core-core repulsion = 18279.873703 eV Total energy + Delta-G solvation = -3146.385389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02830 -38.56679 -37.49133 -34.62326 -33.37412 -32.26667 -29.73066 -28.20185 -26.76323 -25.80741 -25.53196 -23.93075 -22.62137 -20.69470 -19.99556 -19.73311 -18.18129 -16.86334 -16.51500 -16.04096 -15.79595 -15.40745 -14.75371 -14.49577 -14.25468 -13.82810 -13.52514 -13.29951 -12.72827 -12.61674 -12.60799 -12.47797 -12.13933 -11.82744 -11.73002 -11.67391 -11.46306 -11.18570 -10.94820 -10.78402 -10.68110 -10.37687 -10.13904 -10.00379 -9.84358 -9.63443 -9.44898 -9.08804 -8.78322 -8.64199 -6.82919 -5.64681 -3.06427 1.26783 3.26972 3.32992 3.40820 3.44855 3.46315 4.20454 4.31045 4.49252 4.50788 4.83536 4.85970 5.07235 5.15678 5.28712 5.31889 5.41086 5.41592 5.43489 5.50629 5.54314 5.57961 5.68749 5.72213 5.86653 5.91063 6.00138 6.06045 6.11987 6.18860 6.36133 6.50860 6.53206 6.57266 6.60488 6.75484 6.92479 7.52087 7.62500 7.66047 7.86380 8.34982 8.37219 9.22788 9.83537 10.48690 11.39234 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032546 B = 0.003125 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.120489 B = 8958.970604 C = 9404.650209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.163 4.163 3 C 0.553 3.447 4 O -0.546 6.546 5 N -0.722 5.722 6 C 0.133 3.867 7 C -0.115 4.115 8 H 0.075 0.925 9 C -0.135 4.135 10 C 0.152 3.848 11 N -0.605 5.605 12 C -0.223 4.223 13 H 0.076 0.924 14 C -0.012 4.012 15 N -0.923 5.923 16 Si 0.915 3.085 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.286 1.286 20 C 0.141 3.859 21 C -0.075 4.075 22 C -0.102 4.102 23 C -0.142 4.142 24 C -0.105 4.105 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.401 0.599 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.012 0.988 35 H 0.253 0.747 36 H 0.018 0.982 37 H 0.025 0.975 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -20.657 -7.137 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.166 4.166 3 C 0.342 3.658 4 O -0.425 6.425 5 N -0.373 5.373 6 C 0.009 3.991 7 C -0.134 4.134 8 H 0.094 0.906 9 C -0.174 4.174 10 C 0.027 3.973 11 N -0.331 5.331 12 C -0.351 4.351 13 H 0.094 0.906 14 C -0.207 4.207 15 N -0.572 5.572 16 Si 0.745 3.255 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.015 3.985 21 C -0.077 4.077 22 C -0.139 4.139 23 C -0.179 4.179 24 C -0.142 4.142 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.236 0.764 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.030 0.970 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.994 -20.410 -7.032 21.794 hybrid contribution -1.058 0.412 0.746 1.358 sum 1.936 -19.999 -6.286 21.053 Atomic orbital electron populations 1.20691 0.90505 1.03117 1.02435 1.20510 0.95878 0.91437 1.08780 1.18228 0.87206 0.83856 0.76546 1.90756 1.13543 1.87806 1.50404 1.46029 1.10611 1.05835 1.74820 1.21448 0.94417 0.81145 1.02041 1.22447 0.97279 0.94609 0.99078 0.90640 1.23004 0.99656 0.94621 1.00145 1.21922 0.92300 0.94428 0.88607 1.44572 1.68317 0.99225 1.20974 1.19037 1.29782 0.90631 0.95698 0.90602 1.24789 1.01439 0.95815 0.98675 1.69790 1.50532 1.02052 1.34796 0.86144 0.79019 0.77841 0.82446 1.21157 1.21554 1.21239 1.21386 0.96098 0.88267 0.92757 1.23200 0.98061 0.93620 0.92793 1.22156 0.94118 0.95755 1.01829 1.22709 0.96683 0.98214 1.00336 1.22276 0.98443 0.91762 1.01705 0.91120 0.91238 0.91240 0.76386 0.91267 0.91704 0.91837 0.92129 0.87537 0.97048 0.93677 0.96408 0.95725 0.89659 0.88618 0.90553 0.89853 0.88336 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.57 36.00 0.34 -0.62 16 2 C -0.16 -1.91 6.00 -102.85 -0.62 -2.52 16 3 C 0.55 8.17 7.75 -12.66 -0.10 8.08 16 4 O -0.55 -9.78 15.15 5.27 0.08 -9.71 16 5 N -0.72 -9.95 5.38 -61.49 -0.33 -10.28 16 6 C 0.13 2.05 5.00 -4.04 -0.02 2.03 16 7 C -0.11 -1.95 2.98 -88.78 -0.26 -2.21 16 8 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 9 C -0.13 -2.54 6.54 -24.58 -0.16 -2.70 16 10 C 0.15 3.70 5.89 -2.54 -0.01 3.69 16 11 N -0.60 -15.58 3.40 -169.84 -0.58 -16.16 16 12 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 13 H 0.08 2.06 7.83 -52.48 -0.41 1.64 16 14 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 15 N -0.92 -27.05 10.09 55.49 0.56 -26.49 16 16 Si 0.92 22.18 29.55 -169.99 -5.02 17.15 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.14 2.90 6.66 -2.90 -0.02 2.88 16 21 C -0.07 -0.80 6.60 -100.48 -0.66 -1.47 16 22 C -0.10 -1.05 6.99 -27.56 -0.19 -1.24 16 23 C -0.14 -1.06 8.17 -26.21 -0.21 -1.27 16 24 C -0.11 -0.79 7.71 -27.42 -0.21 -1.00 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.52 7.91 -51.93 -0.41 0.11 16 27 H 0.07 0.59 6.70 -51.93 -0.35 0.24 16 28 H 0.40 4.75 6.50 -40.82 -0.27 4.48 16 29 H 0.07 1.18 8.01 -51.92 -0.42 0.77 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.02 0.52 7.73 -51.93 -0.40 0.12 16 38 H 0.08 1.03 7.49 -51.93 -0.39 0.65 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -32.29 344.46 -9.63 -41.92 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.15 Total: 1.59 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.38 Total: -3.22 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.35 Total: -52.93 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.29 -9.63 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753124297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.966 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds