Wall clock time and date at job start Tue Mar 31 2020 00:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47102 * 120.00407 * 2 1 4 4 O 1.21613 * 120.00232 * 180.02562 * 3 2 1 5 5 N 1.34777 * 119.99517 * 359.97438 * 3 2 1 6 6 C 1.46499 * 119.99665 * 179.72418 * 5 3 2 7 7 C 1.53004 * 109.47198 * 180.27868 * 6 5 3 8 8 H 1.08999 * 110.64108 * 305.70248 * 7 6 5 9 9 C 1.55160 * 110.72168 * 182.55897 * 7 6 5 10 10 C 1.54907 * 101.57928 * 206.13501 * 9 7 6 11 11 N 1.47415 * 104.83512 * 37.01131 * 10 9 7 12 12 C 1.36944 * 125.65004 * 155.90235 * 11 10 9 13 13 H 1.08003 * 120.00054 * 179.97438 * 12 11 10 14 14 C 1.38804 * 120.00091 * 359.97438 * 12 11 10 15 15 N 1.31627 * 119.99670 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00401 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46880 * 59.99550 * 16 14 12 18 18 H 1.48501 * 109.47549 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47147 * 299.99882 * 16 14 12 20 20 C 1.47319 * 108.73600 * 335.71407 * 11 10 9 21 21 C 1.33000 * 119.99968 * 179.97438 * 2 1 3 22 22 C 1.51407 * 136.31725 * 179.62601 * 21 2 1 23 23 C 1.53379 * 87.51662 * 206.06031 * 22 21 2 24 24 C 1.51398 * 136.31518 * 0.02562 * 21 2 1 25 25 H 1.09007 * 109.47059 * 89.99980 * 1 2 3 26 26 H 1.08997 * 109.47347 * 209.99731 * 1 2 3 27 27 H 1.08998 * 109.47012 * 330.00455 * 1 2 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 5 3 2 29 29 H 1.09009 * 109.47454 * 300.27637 * 6 5 3 30 30 H 1.08998 * 109.47492 * 60.27932 * 6 5 3 31 31 H 1.09003 * 111.00252 * 324.20668 * 9 7 6 32 32 H 1.09003 * 111.00323 * 88.02029 * 9 7 6 33 33 H 1.09006 * 110.36724 * 155.84894 * 10 9 7 34 34 H 1.08998 * 110.36373 * 278.05592 * 10 9 7 35 35 H 0.97003 * 120.00076 * 180.02562 * 15 14 12 36 36 H 1.09005 * 110.06502 * 241.87345 * 20 11 10 37 37 H 1.09004 * 109.85120 * 120.61535 * 20 11 10 38 38 H 1.08991 * 113.56196 * 320.64634 * 22 21 2 39 39 H 1.08997 * 113.55582 * 91.37727 * 22 21 2 40 40 H 1.09004 * 113.96669 * 220.29141 * 23 22 21 41 41 H 1.09001 * 113.70898 * 88.81033 * 23 22 21 42 42 H 1.08999 * 113.56763 * 268.62886 * 24 21 2 43 43 H 1.09007 * 113.56117 * 39.28468 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.4587 1.2739 -0.0005 5 7 1.5687 2.4411 -0.0005 6 6 2.3012 3.7098 0.0056 7 6 1.3070 4.8728 0.0106 8 1 0.6051 4.7818 -0.8184 9 6 2.0523 6.2324 -0.0477 10 6 1.0300 7.1767 0.6327 11 7 0.4262 6.3681 1.7072 12 6 -0.1619 6.8600 2.8419 13 1 -0.5775 6.1816 3.5723 14 6 -0.2238 8.2304 3.0534 15 7 0.2832 9.0571 2.1634 16 14 -1.0266 8.9015 4.6007 17 1 -0.3085 8.3864 5.7942 18 1 -0.9635 10.3851 4.5877 19 1 -2.4455 8.4664 4.6508 20 6 0.5558 4.9430 1.3568 21 6 2.1720 -1.1518 0.0005 22 6 3.6250 -1.5772 -0.0061 23 6 3.1707 -2.8821 -0.6719 24 6 1.8138 -2.6228 0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 0.5987 2.4412 -0.0005 29 1 2.9276 3.7635 0.8961 30 1 2.9282 3.7717 -0.8839 31 1 2.9833 6.1921 0.5177 32 1 2.2366 6.5330 -1.0791 33 1 1.5369 8.0461 1.0514 34 1 0.2690 7.4900 -0.0820 35 1 0.2403 10.0149 2.3113 36 1 -0.4312 4.4918 1.2545 37 1 1.1254 4.4228 2.1269 38 1 4.2566 -0.9606 -0.6455 39 1 4.0420 -1.7190 0.9909 40 1 3.6834 -3.7700 -0.3017 41 1 3.1393 -2.8311 -1.7603 42 1 1.7335 -3.0517 0.9996 43 1 0.9595 -2.8633 -0.6322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753124297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:58 Heat of formation + Delta-G solvation = -0.543833 kcal Electronic energy + Delta-G solvation = -21427.108444 eV Core-core repulsion = 18279.873703 eV Total energy + Delta-G solvation = -3147.234740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08046 -39.61077 -38.93751 -36.05622 -34.60071 -33.74641 -31.53725 -29.83546 -27.49977 -27.34347 -26.40270 -25.49984 -23.65507 -22.16461 -21.37280 -21.17688 -19.28584 -18.76932 -17.44271 -17.28743 -16.87429 -16.65655 -16.38457 -15.81491 -15.59742 -15.21622 -14.61390 -14.41801 -14.28782 -13.81493 -13.55420 -13.38220 -13.31487 -13.30217 -13.11007 -12.85098 -12.82359 -12.65095 -12.45345 -12.05708 -11.93474 -11.84552 -11.83771 -11.60435 -11.43470 -11.33295 -10.74343 -10.64749 -10.17406 -9.71384 -8.88901 -7.77686 -5.22110 0.37272 1.46028 1.49360 1.55761 2.19209 2.27070 2.49475 3.31589 3.42047 3.58985 3.63056 3.79026 3.84011 3.96867 4.00722 4.06818 4.25492 4.42324 4.44786 4.63661 4.67235 4.72651 4.75619 4.78345 4.83243 4.85050 4.89676 5.01396 5.04192 5.05549 5.09981 5.11481 5.33710 5.37222 5.38224 5.43804 5.47946 5.65136 5.75255 5.82099 6.31377 6.58548 7.10763 7.24252 7.78312 8.42076 9.24117 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032546 B = 0.003125 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.120489 B = 8958.970604 C = 9404.650209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.183 4.183 3 C 0.546 3.454 4 O -0.586 6.586 5 N -0.715 5.715 6 C 0.145 3.855 7 C -0.094 4.094 8 H 0.097 0.903 9 C -0.123 4.123 10 C 0.153 3.847 11 N -0.629 5.629 12 C -0.241 4.241 13 H 0.080 0.920 14 C -0.068 4.068 15 N -0.950 5.950 16 Si 0.981 3.019 17 H -0.278 1.278 18 H -0.293 1.293 19 H -0.277 1.277 20 C 0.138 3.862 21 C -0.081 4.081 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.092 4.092 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.412 0.588 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.071 0.929 34 H -0.009 1.009 35 H 0.247 0.753 36 H 0.030 0.970 37 H 0.019 0.981 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 -23.100 -7.442 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.186 4.186 3 C 0.337 3.663 4 O -0.469 6.469 5 N -0.366 5.366 6 C 0.021 3.979 7 C -0.113 4.113 8 H 0.115 0.885 9 C -0.162 4.162 10 C 0.028 3.972 11 N -0.355 5.355 12 C -0.370 4.370 13 H 0.097 0.903 14 C -0.261 4.261 15 N -0.599 5.599 16 Si 0.809 3.191 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.203 1.203 20 C 0.013 3.987 21 C -0.083 4.083 22 C -0.154 4.154 23 C -0.168 4.168 24 C -0.129 4.129 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.249 0.751 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.009 0.991 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.133 0.867 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.923 -22.888 -7.346 24.115 hybrid contribution -0.672 1.132 0.842 1.563 sum 1.251 -21.756 -6.504 22.742 Atomic orbital electron populations 1.20715 0.88200 1.03855 1.03450 1.20580 0.97365 0.90049 1.10578 1.18827 0.86958 0.84982 0.75555 1.90734 1.15353 1.88412 1.52374 1.45924 1.11117 1.05134 1.74465 1.21182 0.93834 0.81358 1.01569 1.22287 0.97196 0.94125 0.97702 0.88506 1.22851 0.97974 0.94208 1.01128 1.21719 0.92637 0.94714 0.88153 1.44897 1.68291 1.01556 1.20759 1.19427 1.29716 0.91134 0.96737 0.90259 1.25648 1.02465 0.96183 1.01769 1.70052 1.51654 1.01800 1.36423 0.85116 0.78378 0.76685 0.78937 1.20438 1.21891 1.20259 1.21546 0.97087 0.85618 0.94456 1.23702 0.98492 0.95258 0.90799 1.22287 0.93880 0.97386 1.01809 1.22693 0.96577 0.97162 1.00361 1.22325 0.98933 0.88719 1.02913 0.89903 0.89651 0.91341 0.75082 0.93168 0.90861 0.92052 0.89170 0.91114 0.99061 0.94307 0.95169 0.96297 0.92360 0.88511 0.88605 0.89621 0.86679 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.57 71.23 0.68 -0.88 16 2 C -0.18 -4.01 6.00 -18.70 -0.11 -4.13 16 3 C 0.55 15.85 7.75 86.57 0.67 16.52 16 4 O -0.59 -21.33 15.15 -4.07 -0.06 -21.39 16 5 N -0.71 -18.82 5.38 -466.70 -2.51 -21.33 16 6 C 0.14 4.29 5.00 86.38 0.43 4.73 16 7 C -0.09 -3.04 2.98 -9.60 -0.03 -3.07 16 8 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 9 C -0.12 -4.50 6.54 31.99 0.21 -4.30 16 10 C 0.15 7.56 5.89 86.86 0.51 8.07 16 11 N -0.63 -32.71 3.40 -691.24 -2.35 -35.06 16 12 C -0.24 -13.70 10.28 84.03 0.86 -12.84 16 13 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 14 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 15 N -0.95 -57.15 10.09 21.65 0.22 -56.93 16 16 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 C 0.14 5.58 6.66 86.67 0.58 6.15 16 21 C -0.08 -1.60 6.60 -17.17 -0.11 -1.71 16 22 C -0.12 -2.33 6.99 30.06 0.21 -2.12 16 23 C -0.13 -1.63 8.17 30.93 0.25 -1.38 16 24 C -0.09 -1.08 7.71 30.15 0.23 -0.85 16 25 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.08 0.99 7.91 -2.39 -0.02 0.97 16 27 H 0.07 1.01 6.70 -2.39 -0.02 0.99 16 28 H 0.41 8.96 6.50 -92.71 -0.60 8.36 16 29 H 0.05 1.70 8.01 -2.38 -0.02 1.68 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 2.28 8.05 -2.39 -0.02 2.26 16 32 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.07 4.03 5.87 -2.38 -0.01 4.01 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.02 0.79 7.73 -2.38 -0.02 0.77 16 38 H 0.06 1.47 7.49 -2.39 -0.02 1.45 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -71.96 344.46 2.56 -69.39 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.39 Total: 16.53 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 4.85 Total: 0.76 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.64 Total: -113.33 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.39 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -71.96 2.56 -69.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753124297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.848 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds