Wall clock time and date at job start Tue Mar 31 2020 00:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46982 * 2 1 4 4 C 1.53002 * 109.46971 * 240.00665 * 2 1 3 5 5 C 1.47192 * 109.46995 * 120.00119 * 2 1 3 6 6 C 2.64592 * 109.47324 * 120.00144 * 2 1 3 7 7 C 4.07801 * 109.47220 * 120.00269 * 2 1 3 8 8 O 1.21610 * 120.00326 * 336.62807 * 7 6 5 9 9 N 1.34776 * 119.99707 * 156.63288 * 7 6 5 10 10 C 1.46499 * 120.00069 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47095 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.64202 * 305.69997 * 11 10 9 13 13 C 1.55162 * 110.71709 * 182.55924 * 11 10 9 14 14 C 1.54912 * 101.57717 * 205.95763 * 13 11 10 15 15 N 1.47422 * 104.83500 * 37.00946 * 14 13 11 16 16 C 1.36936 * 125.64421 * 155.90551 * 15 14 13 17 17 H 1.08001 * 119.99865 * 179.97438 * 16 15 14 18 18 C 1.38809 * 120.00455 * 359.97438 * 16 15 14 19 19 N 1.31622 * 119.99854 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47348 * 59.99448 * 20 18 16 22 22 H 1.48501 * 109.47361 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47028 * 300.00044 * 20 18 16 24 24 C 1.47018 * 108.70074 * 335.87099 * 15 14 13 25 25 H 1.09002 * 109.46976 * 299.99834 * 1 2 3 26 26 H 1.09001 * 109.47138 * 59.99499 * 1 2 3 27 27 H 1.08996 * 109.46791 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47176 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47122 * 300.00471 * 3 2 1 30 30 H 1.09002 * 109.46673 * 59.99986 * 3 2 1 31 31 H 1.09006 * 109.46579 * 299.99348 * 4 2 1 32 32 H 1.08992 * 109.47571 * 59.99401 * 4 2 1 33 33 H 1.08999 * 109.46945 * 180.02562 * 4 2 1 34 34 H 0.97004 * 119.99976 * 359.97438 * 9 7 6 35 35 H 1.08993 * 109.47119 * 60.00022 * 10 9 7 36 36 H 1.09002 * 109.47071 * 300.00021 * 10 9 7 37 37 H 1.08999 * 111.00577 * 324.02794 * 13 11 10 38 38 H 1.09004 * 111.00046 * 87.84773 * 13 11 10 39 39 H 1.09003 * 110.36123 * 155.85332 * 14 13 11 40 40 H 1.09001 * 110.36394 * 278.16548 * 14 13 11 41 41 H 0.97000 * 120.00270 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.88087 * 241.63802 * 24 15 14 43 43 H 1.09003 * 109.87911 * 120.47955 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0207 -0.6939 1.2018 6 6 2.4121 -1.2473 2.1603 7 6 2.8895 -1.9225 3.3296 8 8 2.1059 -2.4888 4.0673 9 7 4.2072 -1.9303 3.6124 10 6 4.6955 -2.6205 4.8088 11 6 6.2164 -2.4775 4.8950 12 1 6.6875 -2.8212 3.9741 13 6 6.7721 -3.2531 6.1186 14 6 8.0764 -2.4718 6.4157 15 7 7.7422 -1.0620 6.1435 16 6 8.3771 0.0264 6.6795 17 1 8.0559 1.0232 6.4155 18 6 9.4336 -0.1512 7.5621 19 7 9.8249 -1.3660 7.8843 20 14 10.2992 1.3336 8.2938 21 1 9.3229 2.1470 9.0620 22 1 11.3849 0.8776 9.1986 23 1 10.8785 2.1567 7.2019 24 6 6.6150 -1.0183 5.2007 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7215 -1.2491 34 1 4.8323 -1.4789 3.0238 35 1 4.4322 -3.6766 4.7519 36 1 4.2386 -2.1794 5.6947 37 1 6.0833 -3.1984 6.9616 38 1 6.9874 -4.2897 5.8591 39 1 8.3652 -2.5987 7.4591 40 1 8.8773 -2.8061 5.7562 41 1 10.5634 -1.4902 8.5008 42 1 6.9194 -0.5170 4.2819 43 1 5.7745 -0.4912 5.6520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753126199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:02 Heat of formation + Delta-G solvation = 21.319196 kcal Electronic energy + Delta-G solvation = -20828.455796 eV Core-core repulsion = 17682.169108 eV Total energy + Delta-G solvation = -3146.286688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.67740 -37.88533 -37.60894 -34.69300 -32.76517 -32.17513 -29.82402 -28.31005 -27.71681 -27.70002 -25.83166 -24.33746 -22.81987 -21.05355 -20.17177 -19.78566 -18.33938 -16.84677 -16.21603 -16.11327 -15.54173 -14.93908 -14.67929 -14.66029 -14.48931 -14.04736 -13.62047 -12.98516 -12.85933 -12.77340 -12.51811 -12.15002 -12.10894 -11.83348 -11.76052 -11.66199 -11.62982 -11.50858 -10.96971 -10.80277 -10.72435 -10.47508 -10.37794 -10.22218 -10.12246 -10.01341 -9.80386 -9.53521 -9.04321 -8.65456 -6.84384 -5.66028 -3.07867 1.50106 2.17329 3.04806 3.40138 3.44232 3.45656 3.48039 3.99302 4.48093 4.50327 4.52495 4.61368 5.00449 5.17985 5.19455 5.20847 5.23795 5.34162 5.38769 5.43668 5.43938 5.51479 5.61838 5.67112 5.70684 5.85096 5.86359 5.86539 6.04124 6.08866 6.32980 6.35977 6.54234 6.57544 6.70039 6.89272 7.08408 7.44625 7.50422 7.61595 7.84879 8.11243 8.35868 9.21479 9.82364 10.47147 11.37921 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.003032 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.169892 B = 9232.923403 C =10051.318324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.037 3.963 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.075 4.075 6 C -0.217 4.217 7 C 0.630 3.370 8 O -0.529 6.529 9 N -0.711 5.711 10 C 0.132 3.868 11 C -0.115 4.115 12 H 0.077 0.923 13 C -0.135 4.135 14 C 0.152 3.848 15 N -0.604 5.604 16 C -0.224 4.224 17 H 0.076 0.924 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.141 3.859 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.405 0.595 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.012 0.988 41 H 0.253 0.747 42 H 0.018 0.982 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 0.519 -16.957 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 C -0.200 4.200 4 C -0.199 4.199 5 C -0.078 4.078 6 C -0.220 4.220 7 C 0.416 3.584 8 O -0.407 6.407 9 N -0.361 5.361 10 C 0.009 3.991 11 C -0.135 4.135 12 H 0.095 0.905 13 C -0.174 4.174 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.352 4.352 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.015 3.985 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.240 0.760 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -14.922 0.148 -16.236 22.052 hybrid contribution 0.828 0.973 0.048 1.278 sum -14.095 1.121 -16.188 21.494 Atomic orbital electron populations 1.21916 0.92366 1.02888 1.02789 1.17938 0.96016 0.94451 0.87928 1.21913 1.01943 0.93239 1.02858 1.21903 1.01866 1.00608 0.95481 1.22486 0.97576 0.94118 0.93572 1.20809 1.02581 1.02243 0.96348 1.14704 0.82558 0.79320 0.81837 1.90849 1.55724 1.44724 1.49416 1.45952 1.06771 1.55513 1.27855 1.21558 0.94101 0.96847 0.86571 1.22457 0.92432 0.98492 1.00070 0.90470 1.23016 1.00461 0.98147 0.95797 1.21940 0.90145 0.81863 1.03361 1.44495 1.35461 1.02747 1.50353 1.19032 1.10364 0.85711 1.20113 0.90592 1.24790 0.98877 0.96863 1.00138 1.69783 1.30035 1.18763 1.38564 0.86143 0.79031 0.81512 0.78756 1.21136 1.21540 1.21233 1.21333 0.91394 0.92786 0.93030 0.91871 0.91205 0.91918 0.91728 0.91142 0.91853 0.91960 0.91123 0.91794 0.76034 0.91177 0.90792 0.91741 0.92033 0.87488 0.96993 0.93653 0.96395 0.95741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.43 37.16 0.31 -0.63 16 2 C 0.04 0.28 0.95 -157.29 -0.15 0.13 16 3 C -0.14 -0.94 8.43 37.16 0.31 -0.63 16 4 C -0.14 -0.88 8.43 37.16 0.31 -0.57 16 5 C -0.08 -0.84 11.77 -37.13 -0.44 -1.28 16 6 C -0.22 -2.93 13.61 -38.83 -0.53 -3.46 16 7 C 0.63 9.71 7.65 -14.33 -0.11 9.60 16 8 O -0.53 -9.96 17.09 5.27 0.09 -9.87 16 9 N -0.71 -9.79 5.43 -62.77 -0.34 -10.13 16 10 C 0.13 1.97 5.01 -4.04 -0.02 1.95 16 11 C -0.12 -1.91 2.98 -88.78 -0.26 -2.17 16 12 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.13 -2.48 6.53 -24.58 -0.16 -2.64 16 14 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 15 N -0.60 -15.46 3.39 -170.08 -0.58 -16.04 16 16 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 20 Si 0.92 22.10 29.55 -169.99 -5.02 17.07 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 C 0.14 2.87 6.65 -3.07 -0.02 2.85 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.41 4.81 8.37 -40.82 -0.34 4.47 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.21 8.01 -51.93 -0.42 0.79 16 37 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -32.44 357.12 -8.27 -40.71 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.35 Total: -0.72 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.02 Total: -0.06 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.36 Total: -52.52 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.44 -8.27 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753126199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.027 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds