Wall clock time and date at job start Tue Mar 31 2020 00:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46982 * 2 1 4 4 C 1.53002 * 109.46971 * 240.00665 * 2 1 3 5 5 C 1.47192 * 109.46995 * 120.00119 * 2 1 3 6 6 C 2.64592 * 109.47324 * 120.00144 * 2 1 3 7 7 C 4.07801 * 109.47220 * 120.00269 * 2 1 3 8 8 O 1.21610 * 120.00326 * 336.62807 * 7 6 5 9 9 N 1.34776 * 119.99707 * 156.63288 * 7 6 5 10 10 C 1.46499 * 120.00069 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47095 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.64202 * 305.69997 * 11 10 9 13 13 C 1.55162 * 110.71709 * 182.55924 * 11 10 9 14 14 C 1.54912 * 101.57717 * 205.95763 * 13 11 10 15 15 N 1.47422 * 104.83500 * 37.00946 * 14 13 11 16 16 C 1.36936 * 125.64421 * 155.90551 * 15 14 13 17 17 H 1.08001 * 119.99865 * 179.97438 * 16 15 14 18 18 C 1.38809 * 120.00455 * 359.97438 * 16 15 14 19 19 N 1.31622 * 119.99854 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47348 * 59.99448 * 20 18 16 22 22 H 1.48501 * 109.47361 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47028 * 300.00044 * 20 18 16 24 24 C 1.47018 * 108.70074 * 335.87099 * 15 14 13 25 25 H 1.09002 * 109.46976 * 299.99834 * 1 2 3 26 26 H 1.09001 * 109.47138 * 59.99499 * 1 2 3 27 27 H 1.08996 * 109.46791 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47176 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47122 * 300.00471 * 3 2 1 30 30 H 1.09002 * 109.46673 * 59.99986 * 3 2 1 31 31 H 1.09006 * 109.46579 * 299.99348 * 4 2 1 32 32 H 1.08992 * 109.47571 * 59.99401 * 4 2 1 33 33 H 1.08999 * 109.46945 * 180.02562 * 4 2 1 34 34 H 0.97004 * 119.99976 * 359.97438 * 9 7 6 35 35 H 1.08993 * 109.47119 * 60.00022 * 10 9 7 36 36 H 1.09002 * 109.47071 * 300.00021 * 10 9 7 37 37 H 1.08999 * 111.00577 * 324.02794 * 13 11 10 38 38 H 1.09004 * 111.00046 * 87.84773 * 13 11 10 39 39 H 1.09003 * 110.36123 * 155.85332 * 14 13 11 40 40 H 1.09001 * 110.36394 * 278.16548 * 14 13 11 41 41 H 0.97000 * 120.00270 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.88087 * 241.63802 * 24 15 14 43 43 H 1.09003 * 109.87911 * 120.47955 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0207 -0.6939 1.2018 6 6 2.4121 -1.2473 2.1603 7 6 2.8895 -1.9225 3.3296 8 8 2.1059 -2.4888 4.0673 9 7 4.2072 -1.9303 3.6124 10 6 4.6955 -2.6205 4.8088 11 6 6.2164 -2.4775 4.8950 12 1 6.6875 -2.8212 3.9741 13 6 6.7721 -3.2531 6.1186 14 6 8.0764 -2.4718 6.4157 15 7 7.7422 -1.0620 6.1435 16 6 8.3771 0.0264 6.6795 17 1 8.0559 1.0232 6.4155 18 6 9.4336 -0.1512 7.5621 19 7 9.8249 -1.3660 7.8843 20 14 10.2992 1.3336 8.2938 21 1 9.3229 2.1470 9.0620 22 1 11.3849 0.8776 9.1986 23 1 10.8785 2.1567 7.2019 24 6 6.6150 -1.0183 5.2007 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7215 -1.2491 34 1 4.8323 -1.4789 3.0238 35 1 4.4322 -3.6766 4.7519 36 1 4.2386 -2.1794 5.6947 37 1 6.0833 -3.1984 6.9616 38 1 6.9874 -4.2897 5.8591 39 1 8.3652 -2.5987 7.4591 40 1 8.8773 -2.8061 5.7562 41 1 10.5634 -1.4902 8.5008 42 1 6.9194 -0.5170 4.2819 43 1 5.7745 -0.4912 5.6520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753126199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:01 Heat of formation + Delta-G solvation = 1.393234 kcal Electronic energy + Delta-G solvation = -20829.319851 eV Core-core repulsion = 17682.169108 eV Total energy + Delta-G solvation = -3147.150743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91918 -39.28449 -38.47180 -36.15523 -34.41680 -33.32453 -31.61013 -29.92642 -28.20510 -28.19310 -27.50114 -25.91589 -24.05570 -22.24120 -21.69174 -21.25317 -19.53544 -18.78611 -17.46754 -17.09687 -16.72651 -16.66106 -16.12523 -15.63431 -15.22640 -15.20813 -15.13487 -14.41004 -14.28706 -13.55762 -13.46121 -13.34227 -13.31159 -13.16144 -12.84420 -12.75270 -12.65774 -12.61656 -12.32276 -12.26029 -12.05878 -11.99065 -11.84558 -11.65083 -11.52931 -11.32644 -11.30337 -11.24416 -10.73888 -10.25114 -8.88886 -7.78007 -5.22391 0.44670 1.20890 1.45975 1.49117 1.55581 1.98857 2.41285 2.49243 3.08963 3.31203 3.60383 3.77433 3.94338 3.95609 3.96119 3.97751 4.05625 4.31012 4.42810 4.63200 4.68644 4.74082 4.75216 4.76926 4.84051 4.89266 4.96232 4.96489 5.01387 5.06962 5.12451 5.19963 5.22821 5.35817 5.36664 5.37070 5.46587 5.66113 5.82443 6.14817 6.30947 6.32951 6.96344 7.10797 7.78509 8.41851 9.23706 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.003032 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.169892 B = 9232.923403 C =10051.318324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.030 3.970 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.039 4.039 6 C -0.268 4.268 7 C 0.633 3.367 8 O -0.571 6.571 9 N -0.700 5.700 10 C 0.142 3.858 11 C -0.094 4.094 12 H 0.098 0.902 13 C -0.122 4.122 14 C 0.151 3.849 15 N -0.628 5.628 16 C -0.242 4.242 17 H 0.079 0.921 18 C -0.067 4.067 19 N -0.949 5.949 20 Si 0.980 3.020 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.277 1.277 24 C 0.136 3.864 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.415 0.585 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.071 0.929 40 H -0.009 1.009 41 H 0.248 0.752 42 H 0.027 0.973 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 1.314 -19.236 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.042 4.042 6 C -0.271 4.271 7 C 0.421 3.579 8 O -0.453 6.453 9 N -0.350 5.350 10 C 0.019 3.981 11 C -0.113 4.113 12 H 0.116 0.884 13 C -0.161 4.161 14 C 0.026 3.974 15 N -0.355 5.355 16 C -0.371 4.371 17 H 0.097 0.903 18 C -0.260 4.260 19 N -0.598 5.598 20 Si 0.808 3.192 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.203 1.203 24 C 0.011 3.989 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.252 0.748 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.009 0.991 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -15.950 0.958 -18.552 24.485 hybrid contribution 1.114 0.779 0.671 1.516 sum -14.836 1.737 -17.881 23.299 Atomic orbital electron populations 1.21946 0.91302 1.02906 1.03774 1.18315 0.96845 0.94950 0.86929 1.21939 1.01776 0.92366 1.03785 1.21925 1.01773 1.00533 0.95445 1.23383 0.95399 0.92161 0.93253 1.20612 1.04948 1.04352 0.97218 1.14862 0.82475 0.78683 0.81920 1.90816 1.56697 1.46745 1.51008 1.45816 1.06646 1.55075 1.27486 1.21360 0.92528 0.97673 0.86533 1.22293 0.93547 0.95428 1.00055 0.88358 1.22859 0.97365 0.99169 0.96677 1.21746 0.92493 0.82366 1.00746 1.44819 1.36501 1.02763 1.51390 1.19415 1.10683 0.86771 1.20232 0.90341 1.25637 0.99889 0.99573 1.00871 1.70044 1.30236 1.20541 1.39023 0.85125 0.77728 0.78389 0.77929 1.20422 1.21852 1.20330 1.21507 0.89649 0.95524 0.92197 0.92668 0.88507 0.92421 0.92056 0.88579 0.92637 0.92347 0.88609 0.92008 0.74794 0.89759 0.92214 0.91745 0.88963 0.91052 0.99074 0.94282 0.95454 0.96190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.43 71.98 0.61 -0.94 16 2 C 0.03 0.39 0.95 -53.99 -0.05 0.34 16 3 C -0.14 -1.51 8.43 71.98 0.61 -0.90 16 4 C -0.14 -1.34 8.43 71.98 0.61 -0.74 16 5 C -0.04 -0.84 11.77 31.12 0.37 -0.47 16 6 C -0.27 -7.12 13.61 30.02 0.41 -6.72 16 7 C 0.63 19.37 7.65 85.49 0.65 20.02 16 8 O -0.57 -21.70 17.09 -4.06 -0.07 -21.77 16 9 N -0.70 -18.49 5.43 -470.74 -2.55 -21.04 16 10 C 0.14 4.03 5.01 86.38 0.43 4.47 16 11 C -0.09 -2.95 2.98 -9.60 -0.03 -2.98 16 12 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 13 C -0.12 -4.34 6.53 31.99 0.21 -4.13 16 14 C 0.15 7.40 5.89 86.86 0.51 7.91 16 15 N -0.63 -32.47 3.39 -692.00 -2.35 -34.82 16 16 C -0.24 -13.71 10.27 84.03 0.86 -12.85 16 17 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 18 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 19 N -0.95 -56.82 10.09 21.65 0.22 -56.60 16 20 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 C 0.14 5.46 6.65 86.73 0.58 6.04 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.42 9.21 8.37 -92.71 -0.78 8.44 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.06 1.90 8.01 -2.39 -0.02 1.88 16 37 H 0.06 2.30 8.05 -2.39 -0.02 2.28 16 38 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 39 H 0.07 4.02 5.87 -2.39 -0.01 4.00 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.02 0.82 7.74 -2.39 -0.02 0.81 16 Total: -1.00 -72.11 357.12 3.71 -68.40 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.21 Total: 12.24 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.23 Total: 5.68 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -4.69 Total: -112.47 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.07 Total: -21.77 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -72.11 3.71 -68.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753126199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.794 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds