Wall clock time and date at job start Tue Mar 31 2020 00:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47193 * 179.97438 * 59.57067 * 3 2 1 5 5 C 1.53008 * 109.47139 * 225.77740 * 4 3 2 6 6 C 1.52995 * 109.46807 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.46982 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99759 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00344 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99992 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47035 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.91541 * 308.90373 * 11 10 9 13 13 C 1.55153 * 111.00503 * 185.00063 * 11 10 9 14 14 C 1.54323 * 103.10236 * 206.33608 * 13 11 10 15 15 N 1.47486 * 107.03754 * 22.24109 * 14 13 11 16 16 C 1.36932 * 125.59278 * 181.00707 * 15 14 13 17 17 H 1.08009 * 119.99968 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00375 * 0.02562 * 16 15 14 19 19 N 1.31621 * 119.99804 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00331 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46765 * 89.99781 * 20 18 16 22 22 H 1.48499 * 109.47272 * 209.99882 * 20 18 16 23 23 H 1.48499 * 109.47136 * 330.00058 * 20 18 16 24 24 C 1.47428 * 108.75727 * 1.02624 * 15 14 13 25 25 H 1.09003 * 109.46972 * 254.64901 * 1 2 3 26 26 H 1.08994 * 109.47548 * 14.65505 * 1 2 3 27 27 H 1.09001 * 109.47213 * 134.65396 * 1 2 3 28 28 H 1.09004 * 109.47075 * 105.77477 * 4 3 2 29 29 H 1.09001 * 109.47575 * 345.77609 * 4 3 2 30 30 H 1.08996 * 109.46586 * 60.00108 * 5 4 3 31 31 H 1.08992 * 109.46717 * 300.00126 * 5 4 3 32 32 H 1.08997 * 109.48072 * 60.00006 * 6 5 4 33 33 H 1.09001 * 109.47435 * 299.99580 * 6 5 4 34 34 H 0.97002 * 119.99905 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47022 * 60.00359 * 10 9 7 36 36 H 1.08994 * 109.47334 * 299.99712 * 10 9 7 37 37 H 1.09002 * 110.72030 * 324.78875 * 13 11 10 38 38 H 1.09003 * 110.72184 * 87.88526 * 13 11 10 39 39 H 1.09000 * 109.88693 * 141.69901 * 14 13 11 40 40 H 1.09005 * 109.88012 * 262.86516 * 14 13 11 41 41 H 0.97005 * 120.00149 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.36462 * 217.05803 * 24 15 14 43 43 H 1.08996 * 110.46287 * 94.77884 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1179 0.0008 -0.0006 5 6 4.6282 1.0071 1.0330 6 6 6.1581 1.0078 1.0319 7 6 6.6607 1.9984 2.0504 8 8 5.8727 2.6409 2.7116 9 7 7.9857 2.1704 2.2265 10 6 8.4742 3.1339 3.2162 11 6 10.0042 3.1346 3.2152 12 1 10.3939 2.1209 3.3092 13 6 10.5606 4.0505 4.3371 14 6 11.9430 4.4691 3.7937 15 7 11.9003 4.3017 2.3290 16 6 12.9365 4.5473 1.4681 17 1 12.8050 4.3939 0.4071 18 6 14.1558 4.9934 1.9590 19 7 14.3158 5.1808 3.2520 20 14 15.5691 5.3292 0.7846 21 1 15.5141 6.7436 0.3356 22 1 16.8586 5.0796 1.4776 23 1 15.4582 4.4313 -0.3930 24 6 10.5584 3.8269 1.9450 25 1 -0.3633 -0.2721 0.9910 26 1 -0.3634 0.9942 -0.2600 27 1 -0.3634 -0.7223 -0.7310 28 1 4.4808 0.2803 -0.9897 29 1 4.4817 -0.9952 0.2518 30 1 4.2652 0.7275 2.0220 31 1 4.2645 2.0031 0.7807 32 1 6.5207 1.2875 0.0429 33 1 6.5222 0.0118 1.2841 34 1 8.6160 1.6563 1.6979 35 1 8.1113 2.8543 4.2052 36 1 8.1107 4.1299 2.9638 37 1 9.9209 4.9221 4.4762 38 1 10.6646 3.4974 5.2706 39 1 12.1401 5.5113 4.0447 40 1 12.7173 3.8304 4.2188 41 1 15.1678 5.4929 3.5950 42 1 10.6289 3.1133 1.1242 43 1 9.9233 4.6667 1.6631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753133190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:08 Heat of formation + Delta-G solvation = 9.295671 kcal Electronic energy + Delta-G solvation = -20441.495993 eV Core-core repulsion = 17294.687926 eV Total energy + Delta-G solvation = -3146.808068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.75287 -37.67502 -35.94794 -34.61383 -33.51183 -32.49733 -30.29533 -29.53151 -28.29045 -26.79385 -25.36624 -23.62213 -22.16532 -20.54603 -19.99282 -19.58860 -17.46674 -16.81124 -16.31314 -16.20599 -15.94396 -15.04938 -14.68368 -14.47841 -14.12496 -14.02347 -13.84518 -13.68009 -13.40009 -13.19883 -12.61198 -12.47257 -12.33183 -11.97015 -11.80094 -11.69856 -11.38587 -11.13407 -10.90810 -10.80574 -10.40296 -10.16386 -10.03774 -10.00448 -9.92665 -9.88399 -9.68664 -9.63437 -8.94205 -8.61378 -6.84327 -5.72093 -3.05641 2.45116 2.49544 2.68343 3.26516 3.39107 3.43858 3.45912 3.99283 4.48385 4.61806 4.76196 4.80489 5.08453 5.15408 5.18484 5.22801 5.26009 5.30908 5.33430 5.39207 5.40513 5.43595 5.54700 5.67503 5.71319 5.89241 5.90143 6.05261 6.05890 6.07456 6.34565 6.46092 6.49698 6.53424 6.68903 6.90869 7.43113 7.54884 7.57142 7.62243 7.81676 8.24466 8.27573 9.20583 9.81456 10.47722 11.39718 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036244 B = 0.002372 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.354925 B =11801.844115 C =12388.609245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.200 4.200 3 C -0.183 4.183 4 C -0.008 4.008 5 C -0.099 4.099 6 C -0.142 4.142 7 C 0.509 3.491 8 O -0.547 6.547 9 N -0.726 5.726 10 C 0.132 3.868 11 C -0.117 4.117 12 H 0.079 0.921 13 C -0.136 4.136 14 C 0.178 3.822 15 N -0.607 5.607 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.143 3.857 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.402 0.598 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.252 0.748 42 H 0.035 0.965 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.971 -11.503 -4.314 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.200 4.200 3 C -0.183 4.183 4 C -0.044 4.044 5 C -0.137 4.137 6 C -0.182 4.182 7 C 0.295 3.705 8 O -0.425 6.425 9 N -0.377 5.377 10 C 0.008 3.992 11 C -0.137 4.137 12 H 0.097 0.903 13 C -0.175 4.175 14 C 0.053 3.947 15 N -0.334 5.334 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.017 3.983 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.236 0.764 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -20.291 -10.951 -3.811 23.370 hybrid contribution 1.199 -0.007 -0.822 1.453 sum -19.092 -10.958 -4.634 22.496 Atomic orbital electron populations 1.18836 0.84778 1.02958 1.02928 1.22423 0.93993 1.01780 1.01773 1.22341 0.93676 1.01158 1.01157 1.18722 0.84447 1.00653 1.00584 1.21271 0.93029 0.99842 0.99512 1.21686 0.97293 0.99685 0.99553 1.20644 0.82322 0.83553 0.83961 1.90701 1.55389 1.48244 1.48132 1.46123 1.06933 1.43178 1.41487 1.21391 0.93825 0.92496 0.91491 1.22608 0.92015 1.00242 0.98811 0.90256 1.22859 0.99754 0.98100 0.96750 1.21229 0.90412 0.99869 0.83191 1.44595 1.07697 1.78085 1.02988 1.19055 0.89455 1.38056 0.89147 0.90502 1.24810 0.97872 1.01702 0.96169 1.69965 1.24209 1.52051 1.10727 0.86116 0.81914 0.78048 0.79653 1.21622 1.21676 1.20725 1.21566 0.87844 0.95163 0.93770 0.90276 0.90255 0.90361 0.89496 0.89554 0.90829 0.90770 0.88548 0.88681 0.76385 0.91774 0.91429 0.92238 0.92025 0.93845 0.93515 0.93756 0.94659 0.96382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.24 10.32 34.37 0.35 0.12 16 2 C -0.20 -1.99 14.13 -37.12 -0.52 -2.52 16 3 C -0.18 -1.89 13.34 -37.13 -0.50 -2.38 16 4 C -0.01 -0.06 5.70 -29.52 -0.17 -0.23 16 5 C -0.10 -0.91 4.46 -26.73 -0.12 -1.03 16 6 C -0.14 -1.17 5.70 -27.88 -0.16 -1.33 16 7 C 0.51 6.40 7.83 -10.99 -0.09 6.32 16 8 O -0.55 -9.16 15.98 5.56 0.09 -9.07 16 9 N -0.73 -8.79 5.50 -60.30 -0.33 -9.12 16 10 C 0.13 1.89 5.13 -4.04 -0.02 1.86 16 11 C -0.12 -1.91 3.05 -88.47 -0.27 -2.18 16 12 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.14 -2.47 6.41 -24.90 -0.16 -2.63 16 14 C 0.18 4.27 5.39 -2.81 -0.02 4.26 16 15 N -0.61 -15.35 3.41 -169.69 -0.58 -15.93 16 16 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 17 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.06 10.31 55.49 0.57 -26.49 16 20 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.14 2.84 6.65 -2.52 -0.02 2.82 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.40 4.00 8.47 -40.82 -0.35 3.65 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 37 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 40 H 0.05 1.24 7.39 -51.93 -0.38 0.85 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.37 7.90 -51.93 -0.41 -0.04 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -33.85 359.14 -9.19 -43.04 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.40 Total: -1.06 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.93 Total: -3.79 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.34 Total: -51.53 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.85 -9.19 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753133190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.332 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds