Wall clock time and date at job start Tue Mar 31 2020 00:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47193 * 179.97438 * 59.57067 * 3 2 1 5 5 C 1.53008 * 109.47139 * 225.77740 * 4 3 2 6 6 C 1.52995 * 109.46807 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.46982 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99759 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00344 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99992 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47035 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.91541 * 308.90373 * 11 10 9 13 13 C 1.55153 * 111.00503 * 185.00063 * 11 10 9 14 14 C 1.54323 * 103.10236 * 206.33608 * 13 11 10 15 15 N 1.47486 * 107.03754 * 22.24109 * 14 13 11 16 16 C 1.36932 * 125.59278 * 181.00707 * 15 14 13 17 17 H 1.08009 * 119.99968 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00375 * 0.02562 * 16 15 14 19 19 N 1.31621 * 119.99804 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00331 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46765 * 89.99781 * 20 18 16 22 22 H 1.48499 * 109.47272 * 209.99882 * 20 18 16 23 23 H 1.48499 * 109.47136 * 330.00058 * 20 18 16 24 24 C 1.47428 * 108.75727 * 1.02624 * 15 14 13 25 25 H 1.09003 * 109.46972 * 254.64901 * 1 2 3 26 26 H 1.08994 * 109.47548 * 14.65505 * 1 2 3 27 27 H 1.09001 * 109.47213 * 134.65396 * 1 2 3 28 28 H 1.09004 * 109.47075 * 105.77477 * 4 3 2 29 29 H 1.09001 * 109.47575 * 345.77609 * 4 3 2 30 30 H 1.08996 * 109.46586 * 60.00108 * 5 4 3 31 31 H 1.08992 * 109.46717 * 300.00126 * 5 4 3 32 32 H 1.08997 * 109.48072 * 60.00006 * 6 5 4 33 33 H 1.09001 * 109.47435 * 299.99580 * 6 5 4 34 34 H 0.97002 * 119.99905 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47022 * 60.00359 * 10 9 7 36 36 H 1.08994 * 109.47334 * 299.99712 * 10 9 7 37 37 H 1.09002 * 110.72030 * 324.78875 * 13 11 10 38 38 H 1.09003 * 110.72184 * 87.88526 * 13 11 10 39 39 H 1.09000 * 109.88693 * 141.69901 * 14 13 11 40 40 H 1.09005 * 109.88012 * 262.86516 * 14 13 11 41 41 H 0.97005 * 120.00149 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.36462 * 217.05803 * 24 15 14 43 43 H 1.08996 * 110.46287 * 94.77884 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1179 0.0008 -0.0006 5 6 4.6282 1.0071 1.0330 6 6 6.1581 1.0078 1.0319 7 6 6.6607 1.9984 2.0504 8 8 5.8727 2.6409 2.7116 9 7 7.9857 2.1704 2.2265 10 6 8.4742 3.1339 3.2162 11 6 10.0042 3.1346 3.2152 12 1 10.3939 2.1209 3.3092 13 6 10.5606 4.0505 4.3371 14 6 11.9430 4.4691 3.7937 15 7 11.9003 4.3017 2.3290 16 6 12.9365 4.5473 1.4681 17 1 12.8050 4.3939 0.4071 18 6 14.1558 4.9934 1.9590 19 7 14.3158 5.1808 3.2520 20 14 15.5691 5.3292 0.7846 21 1 15.5141 6.7436 0.3356 22 1 16.8586 5.0796 1.4776 23 1 15.4582 4.4313 -0.3930 24 6 10.5584 3.8269 1.9450 25 1 -0.3633 -0.2721 0.9910 26 1 -0.3634 0.9942 -0.2600 27 1 -0.3634 -0.7223 -0.7310 28 1 4.4808 0.2803 -0.9897 29 1 4.4817 -0.9952 0.2518 30 1 4.2652 0.7275 2.0220 31 1 4.2645 2.0031 0.7807 32 1 6.5207 1.2875 0.0429 33 1 6.5222 0.0118 1.2841 34 1 8.6160 1.6563 1.6979 35 1 8.1113 2.8543 4.2052 36 1 8.1107 4.1299 2.9638 37 1 9.9209 4.9221 4.4762 38 1 10.6646 3.4974 5.2706 39 1 12.1401 5.5113 4.0447 40 1 12.7173 3.8304 4.2188 41 1 15.1678 5.4929 3.5950 42 1 10.6289 3.1133 1.1242 43 1 9.9233 4.6667 1.6631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753133190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:07 Heat of formation + Delta-G solvation = -11.807678 kcal Electronic energy + Delta-G solvation = -20442.411103 eV Core-core repulsion = 17294.687926 eV Total energy + Delta-G solvation = -3147.723177 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.80295 -39.24429 -36.68018 -35.94596 -34.33141 -34.12392 -31.72898 -30.65956 -29.71147 -27.71943 -26.93651 -25.11590 -23.03411 -22.00547 -21.49624 -20.84425 -18.88569 -18.19945 -17.29034 -17.14181 -16.90144 -16.63678 -16.16892 -15.61152 -15.51136 -14.77819 -14.72147 -14.65684 -14.31315 -14.17394 -13.97803 -13.81031 -13.50845 -13.25846 -13.14781 -12.97509 -12.74420 -12.63187 -12.44957 -12.01402 -11.87458 -11.83762 -11.82631 -11.53082 -11.45524 -10.87194 -10.70493 -10.61476 -10.56005 -10.02251 -8.89176 -7.84216 -5.19673 1.46446 1.48416 1.56975 1.72424 1.73349 1.79470 2.31212 2.50276 3.34172 3.40428 3.62244 3.75617 3.88718 4.04022 4.05587 4.11602 4.16352 4.46368 4.51585 4.62136 4.67810 4.70887 4.76726 4.78198 4.82548 4.84092 4.87265 4.90079 4.94311 5.07523 5.08589 5.16425 5.23298 5.33639 5.39796 5.46584 5.54181 5.67897 5.78664 6.20318 6.63984 6.74539 7.10499 7.33324 7.78545 8.43486 9.26412 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036244 B = 0.002372 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.354925 B =11801.844115 C =12388.609245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.221 4.221 3 C -0.215 4.215 4 C -0.003 4.003 5 C -0.093 4.093 6 C -0.131 4.131 7 C 0.505 3.495 8 O -0.594 6.594 9 N -0.719 5.719 10 C 0.143 3.857 11 C -0.093 4.093 12 H 0.092 0.908 13 C -0.125 4.125 14 C 0.183 3.817 15 N -0.630 5.630 16 C -0.241 4.241 17 H 0.085 0.915 18 C -0.070 4.070 19 N -0.953 5.953 20 Si 0.979 3.021 21 H -0.289 1.289 22 H -0.295 1.295 23 H -0.266 1.266 24 C 0.138 3.862 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.415 0.585 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.003 0.997 40 H 0.014 0.986 41 H 0.246 0.754 42 H 0.052 0.948 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.858 -13.325 -5.803 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.221 4.221 3 C -0.215 4.215 4 C -0.039 4.039 5 C -0.131 4.131 6 C -0.171 4.171 7 C 0.294 3.706 8 O -0.475 6.475 9 N -0.370 5.370 10 C 0.019 3.981 11 C -0.113 4.113 12 H 0.110 0.890 13 C -0.164 4.164 14 C 0.058 3.942 15 N -0.356 5.356 16 C -0.370 4.370 17 H 0.102 0.898 18 C -0.263 4.263 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.216 1.216 22 H -0.222 1.222 23 H -0.190 1.190 24 C 0.013 3.987 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.252 0.748 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.021 0.979 40 H 0.032 0.968 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -21.198 -12.807 -5.339 25.335 hybrid contribution 1.410 0.581 -0.369 1.569 sum -19.788 -12.225 -5.708 23.950 Atomic orbital electron populations 1.19049 0.82771 1.04038 1.04073 1.23420 0.95486 1.01592 1.01559 1.23140 0.94993 1.01670 1.01689 1.18807 0.83103 1.01166 1.00874 1.21161 0.93963 0.99024 0.98966 1.21715 0.96119 0.99911 0.99326 1.21417 0.81794 0.83471 0.83952 1.90690 1.56484 1.50232 1.50123 1.46024 1.07317 1.42657 1.41051 1.21098 0.91941 0.92577 0.92510 1.22405 0.93224 0.99907 0.95758 0.88968 1.22726 0.96270 0.99235 0.98132 1.20993 0.93049 0.96914 0.83240 1.44930 1.09205 1.78224 1.03280 1.19491 0.90327 1.37167 0.90017 0.89758 1.25681 1.00565 1.02293 0.97752 1.70195 1.24286 1.53248 1.12475 0.85069 0.78348 0.77841 0.78019 1.21613 1.22173 1.19021 1.21755 0.85409 0.95526 0.95962 0.89265 0.89346 0.88740 0.87730 0.87491 0.92814 0.93131 0.85906 0.85484 0.74778 0.91226 0.92821 0.91375 0.89675 0.97868 0.96769 0.94498 0.93018 0.96664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.48 10.32 70.18 0.72 0.24 16 2 C -0.22 -4.26 14.13 31.13 0.44 -3.82 16 3 C -0.21 -4.25 13.34 31.12 0.42 -3.83 16 4 C 0.00 -0.04 5.70 28.79 0.16 0.12 16 5 C -0.09 -1.60 4.46 30.60 0.14 -1.46 16 6 C -0.13 -1.74 5.70 29.85 0.17 -1.57 16 7 C 0.51 11.64 7.83 87.66 0.69 12.32 16 8 O -0.59 -19.51 15.98 -3.04 -0.05 -19.55 16 9 N -0.72 -15.36 5.50 -463.07 -2.55 -17.91 16 10 C 0.14 3.78 5.13 86.38 0.44 4.23 16 11 C -0.09 -2.84 3.05 -9.40 -0.03 -2.87 16 12 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 13 C -0.12 -4.40 6.41 31.78 0.20 -4.20 16 14 C 0.18 9.01 5.39 86.64 0.47 9.47 16 15 N -0.63 -31.91 3.41 -690.79 -2.35 -34.26 16 16 C -0.24 -13.39 10.28 84.03 0.86 -12.53 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 18 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 19 N -0.95 -57.65 10.31 21.65 0.22 -57.43 16 20 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C 0.14 5.28 6.65 86.86 0.58 5.86 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 31 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.42 6.70 8.47 -92.71 -0.79 5.92 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.60 7.96 -2.39 -0.02 1.58 16 37 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 38 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.00 0.17 7.51 -2.39 -0.02 0.15 16 40 H 0.01 0.77 7.39 -2.38 -0.02 0.76 16 41 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.02 0.61 7.90 -2.39 -0.02 0.59 16 Total: -1.00 -76.40 359.14 3.23 -73.17 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.20 Total: 9.94 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 5.73 Total: -1.58 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -4.68 Total: -109.59 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.55 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.40 3.23 -73.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753133190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.360 kcal (2) G-P(sol) polarization free energy of solvation -76.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds