Wall clock time and date at job start Tue Mar 31 2020 00:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47364 * 2 1 4 4 C 1.47197 * 109.47028 * 120.00452 * 2 1 3 5 5 C 2.64598 * 109.46918 * 120.00374 * 2 1 3 6 6 C 4.07799 * 109.46904 * 120.00211 * 2 1 3 7 7 O 1.21614 * 119.99711 * 285.74775 * 6 5 4 8 8 N 1.34778 * 120.00069 * 105.75249 * 6 5 4 9 9 C 1.47019 * 125.64859 * 359.68907 * 8 6 5 10 10 C 1.54316 * 107.27502 * 180.97080 * 9 8 6 11 11 C 1.55152 * 102.86349 * 22.52097 * 10 9 8 12 12 H 1.09002 * 111.00158 * 82.38421 * 11 10 9 13 13 C 1.53003 * 111.03896 * 206.21144 * 11 10 9 14 14 N 1.46495 * 109.47101 * 178.66858 * 13 11 10 15 15 C 1.46504 * 119.99358 * 90.00779 * 14 13 11 16 16 C 1.36940 * 120.00517 * 270.00337 * 14 13 11 17 17 H 1.07998 * 119.99685 * 22.74340 * 16 14 13 18 18 C 1.38813 * 119.99837 * 202.74459 * 16 14 13 19 19 N 1.31612 * 120.00288 * 13.36841 * 18 16 14 20 20 Si 1.86796 * 119.99405 * 193.37269 * 18 16 14 21 21 H 1.48496 * 109.47402 * 89.99951 * 20 18 16 22 22 H 1.48503 * 109.47122 * 210.00099 * 20 18 16 23 23 H 1.48501 * 109.47615 * 329.99681 * 20 18 16 24 24 C 1.47420 * 125.64518 * 179.97438 * 8 6 5 25 25 H 1.09004 * 109.47358 * 300.00154 * 1 2 3 26 26 H 1.09004 * 109.47014 * 59.99909 * 1 2 3 27 27 H 1.09000 * 109.47580 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46619 * 239.99847 * 2 1 3 29 29 H 1.08995 * 109.47296 * 299.99929 * 3 2 1 30 30 H 1.09000 * 109.46656 * 60.00271 * 3 2 1 31 31 H 1.08998 * 109.47180 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.88094 * 300.51152 * 9 8 6 33 33 H 1.08996 * 109.88420 * 61.67725 * 9 8 6 34 34 H 1.09002 * 110.92034 * 264.11101 * 10 9 8 35 35 H 1.08994 * 110.74443 * 140.85938 * 10 9 8 36 36 H 1.08997 * 109.47458 * 298.67691 * 13 11 10 37 37 H 1.09005 * 109.46503 * 58.67341 * 13 11 10 38 38 H 1.08997 * 109.47151 * 95.13420 * 15 14 13 39 39 H 1.09006 * 109.46836 * 215.12504 * 15 14 13 40 40 H 1.08995 * 109.47562 * 335.12453 * 15 14 13 41 41 H 0.96999 * 120.00220 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.36820 * 274.67253 * 24 8 6 43 43 H 1.09001 * 110.36857 * 36.99882 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6940 1.2018 5 6 2.4119 -1.2475 2.1604 6 6 2.8892 -1.9225 3.3296 7 8 2.3806 -1.6983 4.4113 8 7 3.9021 -2.8062 3.2314 9 6 4.6003 -3.1748 1.9912 10 6 5.6622 -4.2320 2.3600 11 6 5.1170 -4.8205 3.6880 12 1 4.3608 -5.5819 3.4965 13 6 6.2518 -5.3828 4.5464 14 7 5.7037 -5.8997 5.8028 15 6 5.2721 -7.2968 5.8937 16 6 5.5948 -5.0772 6.8922 17 1 5.5527 -4.0064 6.7582 18 6 5.5387 -5.6198 8.1687 19 7 5.8506 -6.8839 8.3607 20 14 5.0202 -4.5556 9.6137 21 1 3.5472 -4.6356 9.7840 22 1 5.6882 -5.0386 10.8489 23 1 5.4130 -3.1467 9.3571 24 6 4.4893 -3.5677 4.3487 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 3.8911 -3.5926 1.2766 33 1 5.0861 -2.2973 1.5645 34 1 6.6362 -3.7677 2.5151 35 1 5.7222 -5.0032 1.5921 36 1 6.7495 -6.1894 4.0080 37 1 6.9706 -4.5921 4.7617 38 1 6.0816 -7.9013 6.3028 39 1 4.4014 -7.3664 6.5458 40 1 5.0120 -7.6621 4.9003 41 1 5.8117 -7.2629 9.2528 42 1 5.2572 -2.9771 4.8482 43 1 3.7142 -3.8606 5.0570 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753347680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:50 Heat of formation + Delta-G solvation = 30.841271 kcal Electronic energy + Delta-G solvation = -21385.268302 eV Core-core repulsion = 18239.394522 eV Total energy + Delta-G solvation = -3145.873780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.83442 -37.55754 -36.62143 -35.31635 -32.59616 -31.74462 -30.53720 -28.81084 -27.57946 -26.19883 -25.80916 -24.10458 -22.77368 -21.20982 -20.78168 -19.56873 -17.82932 -16.86427 -16.48958 -15.86154 -15.45684 -14.98238 -14.82111 -14.43093 -13.86655 -13.60263 -13.38099 -13.11098 -12.98034 -12.63293 -12.51275 -12.36243 -12.26751 -11.82242 -11.80428 -11.75122 -11.31506 -11.17466 -10.76181 -10.68571 -10.50018 -10.45469 -10.37573 -10.33568 -10.12765 -10.03527 -9.84494 -9.73185 -8.50159 -8.45653 -6.70909 -5.67948 -3.14842 1.59712 2.24904 3.05720 3.45186 3.51460 3.53943 3.58470 3.97667 4.54091 4.58690 4.71580 4.74047 4.78673 4.93842 5.06985 5.22614 5.22874 5.41294 5.43010 5.46820 5.51465 5.57424 5.62923 5.73874 5.81875 5.83410 5.92220 5.98125 6.13673 6.19558 6.37460 6.50009 6.53134 6.67264 6.77650 6.91002 7.16680 7.40915 7.61493 7.76136 7.86395 8.21634 8.43832 9.28075 9.91483 10.39628 11.36676 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.003703 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.666034 B = 7559.041440 C = 8360.678127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.012 3.988 3 C -0.146 4.146 4 C -0.093 4.093 5 C -0.205 4.205 6 C 0.638 3.362 7 O -0.523 6.523 8 N -0.608 5.608 9 C 0.103 3.897 10 C -0.128 4.128 11 C -0.118 4.118 12 H 0.076 0.924 13 C 0.162 3.838 14 N -0.602 5.602 15 C 0.162 3.838 16 C -0.255 4.255 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.907 5.907 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.125 3.875 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.031 0.969 39 H 0.040 0.960 40 H -0.003 1.003 41 H 0.252 0.748 42 H 0.072 0.928 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 10.199 -20.473 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.006 4.006 3 C -0.203 4.203 4 C -0.095 4.095 5 C -0.208 4.208 6 C 0.426 3.574 7 O -0.400 6.400 8 N -0.341 5.341 9 C -0.020 4.020 10 C -0.166 4.166 11 C -0.140 4.140 12 H 0.095 0.905 13 C 0.034 3.966 14 N -0.324 5.324 15 C 0.017 3.983 16 C -0.384 4.384 17 H 0.088 0.912 18 C -0.195 4.195 19 N -0.553 5.553 20 Si 0.730 3.270 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.004 3.996 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.015 0.985 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.927 10.241 -19.674 22.720 hybrid contribution -0.336 0.469 0.819 1.002 sum -5.263 10.710 -18.855 22.314 Atomic orbital electron populations 1.21854 0.92932 1.02848 1.02802 1.18457 0.96217 0.95166 0.90769 1.21842 1.01726 0.93951 1.02823 1.22536 0.96585 0.95471 0.94917 1.20831 1.02734 1.01911 0.95336 1.14306 0.79267 0.78772 0.85026 1.90885 1.57513 1.64064 1.27570 1.48532 1.33355 1.41077 1.11170 1.22022 0.94853 0.98354 0.86817 1.22678 0.97960 0.97398 0.98600 1.23227 1.00589 0.96166 0.94016 0.90531 1.20653 0.91880 0.96816 0.87253 1.43906 1.72053 1.08886 1.07578 1.20792 0.98858 0.84423 0.94187 1.19211 1.44812 0.89885 0.84513 0.91187 1.24995 1.00663 0.96346 0.97497 1.70067 1.51553 1.12647 1.20987 0.86311 0.78468 0.79909 0.82264 1.21410 1.21832 1.20372 1.22422 0.98132 0.91009 0.88034 0.91885 0.91279 0.91982 0.88298 0.91236 0.91922 0.91988 0.91777 0.91800 0.90416 0.90291 0.93924 0.93138 0.95089 0.94131 0.98479 0.93819 0.90948 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.15 37.16 0.34 -0.65 16 2 C 0.01 0.09 3.30 -93.41 -0.31 -0.22 16 3 C -0.15 -0.95 9.15 37.16 0.34 -0.61 16 4 C -0.09 -1.11 12.56 -37.12 -0.47 -1.57 16 5 C -0.21 -3.09 12.78 -38.84 -0.50 -3.59 16 6 C 0.64 11.63 7.69 -14.33 -0.11 11.52 16 7 O -0.52 -11.64 17.34 5.26 0.09 -11.55 16 8 N -0.61 -10.07 3.33 -173.39 -0.58 -10.65 16 9 C 0.10 1.28 6.44 -3.07 -0.02 1.26 16 10 C -0.13 -1.55 6.42 -24.90 -0.16 -1.71 16 11 C -0.12 -1.94 3.29 -88.46 -0.29 -2.23 16 12 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 13 C 0.16 3.12 5.19 -4.04 -0.02 3.10 16 14 N -0.60 -14.77 2.87 -181.12 -0.52 -15.29 16 15 C 0.16 3.96 8.98 59.85 0.54 4.50 16 16 C -0.25 -6.93 8.98 -15.06 -0.14 -7.07 16 17 H 0.07 1.87 6.73 -52.49 -0.35 1.52 16 18 C 0.00 0.09 5.09 -17.43 -0.09 0.00 16 19 N -0.91 -26.72 10.71 55.49 0.59 -26.12 16 20 Si 0.90 22.61 29.57 -169.99 -5.03 17.58 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.12 2.31 5.07 -2.52 -0.01 2.30 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.05 0.97 8.00 -51.93 -0.42 0.56 16 38 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 39 H 0.04 1.07 7.33 -51.93 -0.38 0.69 16 40 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.07 1.40 7.45 -51.93 -0.39 1.02 16 43 H 0.09 1.94 8.03 -51.93 -0.42 1.52 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -32.76 356.12 -8.34 -41.10 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -7.37 Total: -5.47 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.89 Total: 5.04 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.50 Total: -52.06 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.76 -8.34 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753347680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.937 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds