Wall clock time and date at job start Tue Mar 31 2020 00:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47364 * 2 1 4 4 C 1.47197 * 109.47028 * 120.00452 * 2 1 3 5 5 C 2.64598 * 109.46918 * 120.00374 * 2 1 3 6 6 C 4.07799 * 109.46904 * 120.00211 * 2 1 3 7 7 O 1.21614 * 119.99711 * 285.74775 * 6 5 4 8 8 N 1.34778 * 120.00069 * 105.75249 * 6 5 4 9 9 C 1.47019 * 125.64859 * 359.68907 * 8 6 5 10 10 C 1.54316 * 107.27502 * 180.97080 * 9 8 6 11 11 C 1.55152 * 102.86349 * 22.52097 * 10 9 8 12 12 H 1.09002 * 111.00158 * 82.38421 * 11 10 9 13 13 C 1.53003 * 111.03896 * 206.21144 * 11 10 9 14 14 N 1.46495 * 109.47101 * 178.66858 * 13 11 10 15 15 C 1.46504 * 119.99358 * 90.00779 * 14 13 11 16 16 C 1.36940 * 120.00517 * 270.00337 * 14 13 11 17 17 H 1.07998 * 119.99685 * 22.74340 * 16 14 13 18 18 C 1.38813 * 119.99837 * 202.74459 * 16 14 13 19 19 N 1.31612 * 120.00288 * 13.36841 * 18 16 14 20 20 Si 1.86796 * 119.99405 * 193.37269 * 18 16 14 21 21 H 1.48496 * 109.47402 * 89.99951 * 20 18 16 22 22 H 1.48503 * 109.47122 * 210.00099 * 20 18 16 23 23 H 1.48501 * 109.47615 * 329.99681 * 20 18 16 24 24 C 1.47420 * 125.64518 * 179.97438 * 8 6 5 25 25 H 1.09004 * 109.47358 * 300.00154 * 1 2 3 26 26 H 1.09004 * 109.47014 * 59.99909 * 1 2 3 27 27 H 1.09000 * 109.47580 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46619 * 239.99847 * 2 1 3 29 29 H 1.08995 * 109.47296 * 299.99929 * 3 2 1 30 30 H 1.09000 * 109.46656 * 60.00271 * 3 2 1 31 31 H 1.08998 * 109.47180 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.88094 * 300.51152 * 9 8 6 33 33 H 1.08996 * 109.88420 * 61.67725 * 9 8 6 34 34 H 1.09002 * 110.92034 * 264.11101 * 10 9 8 35 35 H 1.08994 * 110.74443 * 140.85938 * 10 9 8 36 36 H 1.08997 * 109.47458 * 298.67691 * 13 11 10 37 37 H 1.09005 * 109.46503 * 58.67341 * 13 11 10 38 38 H 1.08997 * 109.47151 * 95.13420 * 15 14 13 39 39 H 1.09006 * 109.46836 * 215.12504 * 15 14 13 40 40 H 1.08995 * 109.47562 * 335.12453 * 15 14 13 41 41 H 0.96999 * 120.00220 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.36820 * 274.67253 * 24 8 6 43 43 H 1.09001 * 110.36857 * 36.99882 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6940 1.2018 5 6 2.4119 -1.2475 2.1604 6 6 2.8892 -1.9225 3.3296 7 8 2.3806 -1.6983 4.4113 8 7 3.9021 -2.8062 3.2314 9 6 4.6003 -3.1748 1.9912 10 6 5.6622 -4.2320 2.3600 11 6 5.1170 -4.8205 3.6880 12 1 4.3608 -5.5819 3.4965 13 6 6.2518 -5.3828 4.5464 14 7 5.7037 -5.8997 5.8028 15 6 5.2721 -7.2968 5.8937 16 6 5.5948 -5.0772 6.8922 17 1 5.5527 -4.0064 6.7582 18 6 5.5387 -5.6198 8.1687 19 7 5.8506 -6.8839 8.3607 20 14 5.0202 -4.5556 9.6137 21 1 3.5472 -4.6356 9.7840 22 1 5.6882 -5.0386 10.8489 23 1 5.4130 -3.1467 9.3571 24 6 4.4893 -3.5677 4.3487 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 3.8911 -3.5926 1.2766 33 1 5.0861 -2.2973 1.5645 34 1 6.6362 -3.7677 2.5151 35 1 5.7222 -5.0032 1.5921 36 1 6.7495 -6.1894 4.0080 37 1 6.9706 -4.5921 4.7617 38 1 6.0816 -7.9013 6.3028 39 1 4.4014 -7.3664 6.5458 40 1 5.0120 -7.6621 4.9003 41 1 5.8117 -7.2629 9.2528 42 1 5.2572 -2.9771 4.8482 43 1 3.7142 -3.8606 5.0570 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753347680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:49 Heat of formation + Delta-G solvation = 11.225244 kcal Electronic energy + Delta-G solvation = -21386.118917 eV Core-core repulsion = 18239.394522 eV Total energy + Delta-G solvation = -3146.724395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19054 -39.00056 -37.34535 -37.12605 -34.11157 -33.06305 -32.10641 -30.15687 -28.07054 -27.87841 -27.73923 -25.44471 -23.79870 -22.86494 -21.82923 -21.04096 -19.06470 -18.81423 -17.56565 -17.25293 -16.83277 -16.57148 -15.94792 -15.51630 -15.29993 -15.14591 -14.69535 -14.44876 -14.40861 -13.98670 -13.87361 -13.20593 -13.11590 -13.08486 -12.96290 -12.89891 -12.65394 -12.50721 -12.36713 -12.33747 -12.15594 -11.96579 -11.92253 -11.63987 -11.56604 -11.45550 -11.37922 -11.18138 -10.62740 -9.81995 -8.74856 -7.82637 -5.29635 0.41480 1.18775 1.40587 1.44410 1.50984 1.85470 2.37546 2.48824 2.97704 3.30315 3.51780 3.68597 3.88185 4.02340 4.04829 4.13071 4.16775 4.28113 4.44669 4.45751 4.64972 4.73091 4.77719 4.81820 4.87856 4.91285 4.92498 4.93723 4.97879 5.06094 5.10246 5.21080 5.22219 5.32529 5.33880 5.38736 5.50048 5.65827 5.74596 6.14879 6.31386 6.34720 6.84930 7.17206 7.90346 8.31792 9.19901 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.003703 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.666034 B = 7559.041440 C = 8360.678127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.007 3.993 3 C -0.145 4.145 4 C -0.037 4.037 5 C -0.269 4.269 6 C 0.633 3.367 7 O -0.584 6.584 8 N -0.607 5.607 9 C 0.099 3.901 10 C -0.111 4.111 11 C -0.107 4.107 12 H 0.071 0.929 13 C 0.160 3.840 14 N -0.619 5.619 15 C 0.175 3.825 16 C -0.249 4.249 17 H 0.068 0.932 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.952 3.048 21 H -0.294 1.294 22 H -0.290 1.290 23 H -0.273 1.273 24 C 0.128 3.872 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.132 0.868 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.035 0.965 41 H 0.247 0.753 42 H 0.058 0.942 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 11.422 -24.641 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.010 4.010 3 C -0.202 4.202 4 C -0.040 4.040 5 C -0.271 4.271 6 C 0.424 3.576 7 O -0.467 6.467 8 N -0.338 5.338 9 C -0.022 4.022 10 C -0.150 4.150 11 C -0.129 4.129 12 H 0.089 0.911 13 C 0.034 3.966 14 N -0.342 5.342 15 C 0.030 3.970 16 C -0.380 4.380 17 H 0.085 0.915 18 C -0.247 4.247 19 N -0.583 5.583 20 Si 0.781 3.219 21 H -0.222 1.222 22 H -0.216 1.216 23 H -0.198 1.198 24 C 0.006 3.994 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.647 11.476 -23.916 26.931 hybrid contribution -0.448 0.165 1.939 1.997 sum -5.095 11.641 -21.978 25.387 Atomic orbital electron populations 1.21888 0.92060 1.02857 1.03649 1.18916 0.96810 0.95727 0.89580 1.21869 1.01746 0.92982 1.03639 1.23514 0.93373 0.92651 0.94419 1.20333 1.05920 1.04682 0.96209 1.14726 0.78963 0.78591 0.85361 1.90829 1.59586 1.66181 1.30057 1.48594 1.32998 1.40118 1.12109 1.22330 0.95143 0.99530 0.85212 1.22686 0.98041 0.97825 0.96399 1.22958 0.99328 0.94783 0.95816 0.91053 1.20871 0.92710 0.97494 0.85517 1.44153 1.72620 1.08655 1.08772 1.20542 0.96631 0.84469 0.95345 1.19444 1.42781 0.90207 0.85518 0.91472 1.25614 1.01939 0.97436 0.99662 1.70194 1.53428 1.13799 1.20924 0.85489 0.77478 0.78897 0.80006 1.22162 1.21618 1.19784 1.22169 0.96455 0.92325 0.88476 0.93242 0.88327 0.92439 0.85077 0.88374 0.93250 0.92024 0.89853 0.89524 0.89103 0.86855 0.91444 0.93239 0.97439 0.97369 0.94681 0.94390 0.92368 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.15 71.98 0.66 -0.86 16 2 C 0.01 0.08 3.30 -12.60 -0.04 0.04 16 3 C -0.15 -1.36 9.15 71.98 0.66 -0.70 16 4 C -0.04 -0.80 12.56 31.12 0.39 -0.41 16 5 C -0.27 -7.98 12.78 30.02 0.38 -7.60 16 6 C 0.63 23.90 7.69 85.49 0.66 24.56 16 7 O -0.58 -27.85 17.34 -4.08 -0.07 -27.92 16 8 N -0.61 -20.11 3.33 -820.73 -2.73 -22.84 16 9 C 0.10 2.17 6.44 86.73 0.56 2.72 16 10 C -0.11 -2.27 6.42 31.78 0.20 -2.07 16 11 C -0.11 -3.37 3.29 -9.40 -0.03 -3.40 16 12 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 13 C 0.16 5.95 5.19 86.38 0.45 6.39 16 14 N -0.62 -30.61 2.87 -726.93 -2.09 -32.70 16 15 C 0.18 8.66 8.98 127.77 1.15 9.80 16 16 C -0.25 -13.89 8.98 84.03 0.75 -13.14 16 17 H 0.07 3.72 6.73 -2.91 -0.02 3.70 16 18 C -0.05 -2.99 5.09 84.86 0.43 -2.56 16 19 N -0.94 -56.79 10.71 21.65 0.23 -56.56 16 20 Si 0.95 48.00 29.57 68.60 2.03 50.03 16 21 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 22 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 23 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 24 C 0.13 4.88 5.07 86.86 0.44 5.32 16 25 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.68 8.04 -2.39 -0.02 1.66 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 37 H 0.05 1.85 8.00 -2.38 -0.02 1.83 16 38 H 0.01 0.40 7.34 -2.39 -0.02 0.38 16 39 H 0.01 0.42 7.33 -2.38 -0.02 0.40 16 40 H 0.03 1.43 8.03 -2.39 -0.02 1.41 16 41 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.06 2.35 7.45 -2.39 -0.02 2.33 16 43 H 0.04 2.00 8.03 -2.39 -0.02 1.98 16 Total: -1.00 -76.70 356.12 5.00 -71.70 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: 0.97 Total: 0.19 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 6.66 Total: 18.10 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -4.58 Total: -112.10 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.07 Total: -27.92 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -76.70 5.00 -71.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753347680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.924 kcal (2) G-P(sol) polarization free energy of solvation -76.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds