Wall clock time and date at job start Tue Mar 31 2020 01:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.46780 * 2 1 4 4 C 1.50698 * 120.00347 * 271.99259 * 3 2 1 5 5 C 1.32994 * 119.99933 * 91.99926 * 3 2 1 6 6 C 1.47103 * 120.00166 * 352.43035 * 5 3 2 7 7 O 1.21619 * 119.99744 * 353.43583 * 6 5 3 8 8 N 1.34770 * 120.00438 * 173.43238 * 6 5 3 9 9 C 1.46672 * 125.34064 * 180.02562 * 8 6 5 10 10 C 1.53726 * 107.94416 * 180.54785 * 9 8 6 11 11 H 1.08990 * 112.56332 * 139.71795 * 10 9 8 12 12 C 1.53691 * 109.33883 * 266.25528 * 10 9 8 13 13 N 1.46644 * 108.01143 * 127.55751 * 12 10 9 14 14 C 1.36931 * 125.33520 * 180.81488 * 13 12 10 15 15 H 1.07999 * 120.00843 * 180.02562 * 14 13 12 16 16 C 1.38814 * 119.99610 * 0.02562 * 14 13 12 17 17 N 1.31627 * 120.00020 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00256 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47139 * 59.99618 * 18 16 14 20 20 H 1.48489 * 109.47538 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46878 * 299.99920 * 18 16 14 22 22 C 1.46753 * 109.33752 * 0.83401 * 13 12 10 23 23 C 1.53931 * 106.72119 * 341.65871 * 22 13 12 24 24 H 1.08996 * 113.01152 * 150.83720 * 23 22 13 25 25 C 1.46775 * 125.33620 * 359.70018 * 8 6 5 26 26 H 1.09004 * 109.46985 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47410 * 300.00061 * 1 2 3 28 28 H 1.09000 * 109.47052 * 60.00378 * 1 2 3 29 29 H 1.09005 * 109.47425 * 240.00365 * 2 1 3 30 30 H 1.09000 * 109.47513 * 119.99889 * 2 1 3 31 31 H 1.08996 * 109.47490 * 270.00315 * 4 3 2 32 32 H 1.08996 * 109.47303 * 150.00192 * 4 3 2 33 33 H 1.09007 * 109.46794 * 30.00483 * 4 3 2 34 34 H 1.08004 * 120.00012 * 172.43365 * 5 3 2 35 35 H 1.08998 * 109.77020 * 300.16953 * 9 8 6 36 36 H 1.08996 * 109.76727 * 60.92935 * 9 8 6 37 37 H 1.09002 * 109.76018 * 247.19113 * 12 10 9 38 38 H 1.08999 * 109.76468 * 7.91750 * 12 10 9 39 39 H 0.97000 * 119.99750 * 180.02562 * 17 16 14 40 40 H 1.09000 * 110.00661 * 222.34205 * 22 13 12 41 41 H 1.08993 * 110.00860 * 100.97621 * 22 13 12 42 42 H 1.09007 * 110.02796 * 280.76983 * 25 8 6 43 43 H 1.08997 * 110.03294 * 42.18917 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2406 2.1464 -1.3042 5 6 2.2917 2.0344 1.1511 6 6 1.9334 1.3912 2.4246 7 8 1.2942 0.3565 2.4245 8 7 2.3134 1.9483 3.5914 9 6 2.0218 1.4090 4.9238 10 6 2.6274 2.3646 5.9645 11 1 1.9772 2.5102 6.8270 12 6 4.0337 1.8762 6.3464 13 7 4.9637 2.9980 6.1817 14 6 6.3128 2.9483 6.4104 15 1 6.9187 3.8299 6.2615 16 6 6.9019 1.7648 6.8336 17 7 6.1635 0.6904 7.0155 18 14 8.7423 1.6971 7.1462 19 1 9.1009 2.6749 8.2048 20 1 9.1198 0.3300 7.5860 21 1 9.4695 2.0326 5.8956 22 6 4.2219 4.1824 5.7339 23 6 2.8795 3.6786 5.1737 24 1 2.0742 4.4055 5.2790 25 6 3.0899 3.1864 3.7278 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.2591 1.9791 -1.6545 32 1 2.0781 3.2140 -1.1561 33 1 1.5351 1.7710 -2.0456 34 1 2.7655 3.0050 1.1509 35 1 0.9432 1.3435 5.0670 36 1 2.4685 0.4202 5.0272 37 1 4.0388 1.5427 7.3842 38 1 4.3283 1.0544 5.6937 39 1 6.5752 -0.1365 7.3116 40 1 4.7809 4.6997 4.9541 41 1 4.0469 4.8529 6.5751 42 1 4.1463 2.9862 3.5484 43 1 2.7265 3.9346 3.0235 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754842083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:53 Heat of formation + Delta-G solvation = 8.143912 kcal Electronic energy + Delta-G solvation = -22428.525463 eV Core-core repulsion = 19281.667451 eV Total energy + Delta-G solvation = -3146.858012 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17239 -38.55696 -35.88882 -34.76579 -32.30574 -31.03915 -30.26109 -29.38227 -28.01613 -25.47745 -25.42231 -23.74134 -22.82367 -20.18832 -20.04669 -19.25261 -17.84329 -17.14675 -16.69609 -15.89313 -15.04399 -14.83669 -14.61898 -14.24793 -13.77870 -13.66900 -13.30735 -13.01658 -12.90122 -12.75282 -12.53924 -12.27884 -12.01896 -11.96051 -11.79543 -11.47922 -11.42130 -11.03151 -10.90035 -10.81056 -10.65074 -10.37040 -10.10863 -10.07456 -9.83782 -9.63132 -9.24809 -9.05444 -8.60264 -8.14673 -6.84371 -5.72879 -3.06924 1.46998 3.37608 3.39652 3.43997 3.45623 3.54177 4.48610 4.65510 4.75169 4.87129 5.03003 5.18654 5.29890 5.34492 5.42648 5.43910 5.50322 5.60934 5.61934 5.68550 5.69041 5.73312 5.74406 5.91986 5.95128 6.01835 6.18666 6.25839 6.32227 6.37984 6.42801 6.50909 6.57056 6.60466 6.65348 6.78574 6.82983 7.55520 7.58481 7.81060 7.91541 8.25956 8.51704 9.21055 9.81712 10.45415 11.38423 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.004419 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.222452 B = 6335.211042 C = 6623.611456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 C -0.037 4.037 4 C -0.124 4.124 5 C -0.222 4.222 6 C 0.556 3.444 7 O -0.544 6.544 8 N -0.604 5.604 9 C 0.122 3.878 10 C -0.123 4.123 11 H 0.090 0.910 12 C 0.185 3.815 13 N -0.602 5.602 14 C -0.232 4.232 15 H 0.078 0.922 16 C -0.006 4.006 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.145 3.855 23 C -0.112 4.112 24 H 0.089 0.911 25 C 0.114 3.886 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.253 0.747 40 H 0.037 0.963 41 H 0.020 0.980 42 H 0.078 0.922 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 4.348 -12.239 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C -0.039 4.039 4 C -0.181 4.181 5 C -0.242 4.242 6 C 0.348 3.652 7 O -0.426 6.426 8 N -0.336 5.336 9 C 0.000 4.000 10 C -0.143 4.143 11 H 0.108 0.892 12 C 0.060 3.940 13 N -0.329 5.329 14 C -0.360 4.360 15 H 0.096 0.904 16 C -0.202 4.202 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.019 3.981 23 C -0.132 4.132 24 H 0.107 0.893 25 C -0.009 4.009 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.096 0.904 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.178 3.604 -12.215 16.304 hybrid contribution 1.145 0.088 0.281 1.182 sum -9.034 3.692 -11.934 15.416 Atomic orbital electron populations 1.21512 0.94426 1.01449 1.01261 1.20989 0.96965 0.92661 1.03528 1.22503 0.91304 0.95801 0.94300 1.20962 1.02577 1.00008 0.94544 1.22409 1.07495 1.02408 0.91912 1.18159 0.79751 0.84019 0.83250 1.90691 1.41263 1.23650 1.86965 1.48162 1.53942 1.25735 1.05766 1.21782 0.99159 0.98037 0.81071 1.23152 1.00558 0.93969 0.96644 0.89224 1.21111 0.82446 0.90148 1.00267 1.44207 1.03875 1.05875 1.78946 1.18985 0.81626 0.96327 1.39094 0.90435 1.24802 0.98098 0.95802 1.01521 1.69952 1.33689 1.00911 1.52233 0.86202 0.84803 0.76728 0.78026 1.21146 1.21595 1.21183 1.21164 0.89863 0.91026 0.96083 1.22949 0.99072 0.97419 0.93723 0.89273 1.22112 0.96695 0.85226 0.96873 0.92900 0.91784 0.94006 0.92419 0.87819 0.90592 0.91252 0.91102 0.85783 0.92464 0.90993 0.93792 0.93082 0.93643 0.94459 0.96277 0.90374 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.44 37.16 0.35 -1.22 16 2 C -0.10 -1.34 5.31 -27.89 -0.15 -1.49 16 3 C -0.04 -0.45 5.36 -101.17 -0.54 -0.99 16 4 C -0.12 -1.08 10.04 36.00 0.36 -0.72 16 5 C -0.22 -3.06 9.06 -37.81 -0.34 -3.40 16 6 C 0.56 9.48 7.62 -12.67 -0.10 9.39 16 7 O -0.54 -10.30 11.94 5.26 0.06 -10.23 16 8 N -0.60 -10.38 3.31 -173.55 -0.57 -10.95 16 9 C 0.12 2.16 6.23 -3.57 -0.02 2.14 16 10 C -0.12 -2.24 4.02 -88.60 -0.36 -2.59 16 11 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 12 C 0.19 4.38 4.75 -3.60 -0.02 4.36 16 13 N -0.60 -14.87 3.37 -171.93 -0.58 -15.45 16 14 C -0.23 -6.34 10.25 -15.06 -0.15 -6.49 16 15 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 16 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 17 N -0.92 -26.88 10.25 55.49 0.57 -26.31 16 18 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 C 0.15 2.83 6.37 -3.42 -0.02 2.80 16 23 C -0.11 -1.82 4.19 -88.23 -0.37 -2.19 16 24 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 25 C 0.11 1.81 5.68 -3.28 -0.02 1.79 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.91 6.86 -51.93 -0.36 0.55 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.10 1.65 5.61 -51.93 -0.29 1.36 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.12 1.49 6.91 -52.48 -0.36 1.13 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.42 7.44 -51.93 -0.39 1.03 16 37 H 0.04 1.16 7.45 -51.93 -0.39 0.78 16 38 H 0.05 1.37 6.51 -51.93 -0.34 1.03 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.04 0.70 7.95 -51.93 -0.41 0.28 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 1.44 7.72 -51.93 -0.40 1.04 16 43 H 0.06 0.83 7.27 -51.93 -0.38 0.45 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -30.88 334.71 -9.06 -39.93 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.08 Total: -0.09 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.47 Total: 1.14 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.59 Total: -52.72 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.06 Total: -10.23 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.88 -9.06 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754842083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.079 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds