Wall clock time and date at job start Tue Mar 31 2020 01:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.46780 * 2 1 4 4 C 1.50698 * 120.00347 * 271.99259 * 3 2 1 5 5 C 1.32994 * 119.99933 * 91.99926 * 3 2 1 6 6 C 1.47103 * 120.00166 * 352.43035 * 5 3 2 7 7 O 1.21619 * 119.99744 * 353.43583 * 6 5 3 8 8 N 1.34770 * 120.00438 * 173.43238 * 6 5 3 9 9 C 1.46672 * 125.34064 * 180.02562 * 8 6 5 10 10 C 1.53726 * 107.94416 * 180.54785 * 9 8 6 11 11 H 1.08990 * 112.56332 * 139.71795 * 10 9 8 12 12 C 1.53691 * 109.33883 * 266.25528 * 10 9 8 13 13 N 1.46644 * 108.01143 * 127.55751 * 12 10 9 14 14 C 1.36931 * 125.33520 * 180.81488 * 13 12 10 15 15 H 1.07999 * 120.00843 * 180.02562 * 14 13 12 16 16 C 1.38814 * 119.99610 * 0.02562 * 14 13 12 17 17 N 1.31627 * 120.00020 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00256 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47139 * 59.99618 * 18 16 14 20 20 H 1.48489 * 109.47538 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46878 * 299.99920 * 18 16 14 22 22 C 1.46753 * 109.33752 * 0.83401 * 13 12 10 23 23 C 1.53931 * 106.72119 * 341.65871 * 22 13 12 24 24 H 1.08996 * 113.01152 * 150.83720 * 23 22 13 25 25 C 1.46775 * 125.33620 * 359.70018 * 8 6 5 26 26 H 1.09004 * 109.46985 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47410 * 300.00061 * 1 2 3 28 28 H 1.09000 * 109.47052 * 60.00378 * 1 2 3 29 29 H 1.09005 * 109.47425 * 240.00365 * 2 1 3 30 30 H 1.09000 * 109.47513 * 119.99889 * 2 1 3 31 31 H 1.08996 * 109.47490 * 270.00315 * 4 3 2 32 32 H 1.08996 * 109.47303 * 150.00192 * 4 3 2 33 33 H 1.09007 * 109.46794 * 30.00483 * 4 3 2 34 34 H 1.08004 * 120.00012 * 172.43365 * 5 3 2 35 35 H 1.08998 * 109.77020 * 300.16953 * 9 8 6 36 36 H 1.08996 * 109.76727 * 60.92935 * 9 8 6 37 37 H 1.09002 * 109.76018 * 247.19113 * 12 10 9 38 38 H 1.08999 * 109.76468 * 7.91750 * 12 10 9 39 39 H 0.97000 * 119.99750 * 180.02562 * 17 16 14 40 40 H 1.09000 * 110.00661 * 222.34205 * 22 13 12 41 41 H 1.08993 * 110.00860 * 100.97621 * 22 13 12 42 42 H 1.09007 * 110.02796 * 280.76983 * 25 8 6 43 43 H 1.08997 * 110.03294 * 42.18917 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2406 2.1464 -1.3042 5 6 2.2917 2.0344 1.1511 6 6 1.9334 1.3912 2.4246 7 8 1.2942 0.3565 2.4245 8 7 2.3134 1.9483 3.5914 9 6 2.0218 1.4090 4.9238 10 6 2.6274 2.3646 5.9645 11 1 1.9772 2.5102 6.8270 12 6 4.0337 1.8762 6.3464 13 7 4.9637 2.9980 6.1817 14 6 6.3128 2.9483 6.4104 15 1 6.9187 3.8299 6.2615 16 6 6.9019 1.7648 6.8336 17 7 6.1635 0.6904 7.0155 18 14 8.7423 1.6971 7.1462 19 1 9.1009 2.6749 8.2048 20 1 9.1198 0.3300 7.5860 21 1 9.4695 2.0326 5.8956 22 6 4.2219 4.1824 5.7339 23 6 2.8795 3.6786 5.1737 24 1 2.0742 4.4055 5.2790 25 6 3.0899 3.1864 3.7278 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.2591 1.9791 -1.6545 32 1 2.0781 3.2140 -1.1561 33 1 1.5351 1.7710 -2.0456 34 1 2.7655 3.0050 1.1509 35 1 0.9432 1.3435 5.0670 36 1 2.4685 0.4202 5.0272 37 1 4.0388 1.5427 7.3842 38 1 4.3283 1.0544 5.6937 39 1 6.5752 -0.1365 7.3116 40 1 4.7809 4.6997 4.9541 41 1 4.0469 4.8529 6.5751 42 1 4.1463 2.9862 3.5484 43 1 2.7265 3.9346 3.0235 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754842083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:53 Heat of formation + Delta-G solvation = -10.108732 kcal Electronic energy + Delta-G solvation = -22429.316957 eV Core-core repulsion = 19281.667451 eV Total energy + Delta-G solvation = -3147.649506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54093 -39.94360 -37.09339 -36.28616 -34.12431 -32.34635 -31.50203 -31.06259 -29.03603 -27.19238 -26.99569 -24.96651 -24.18453 -21.88787 -21.32990 -20.72326 -19.10367 -18.73131 -18.21395 -17.32923 -16.58826 -16.24322 -16.01573 -15.62269 -15.45411 -14.78994 -14.61017 -14.42610 -14.12970 -13.86707 -13.70190 -13.56847 -13.39608 -13.26744 -13.08474 -12.95840 -12.82448 -12.72138 -12.65604 -12.06229 -11.97367 -11.87142 -11.83691 -11.70059 -11.50778 -11.34152 -10.70473 -10.49176 -10.08146 -9.48074 -8.87013 -7.84653 -5.19864 0.42031 1.45152 1.48246 1.54576 2.10050 2.32312 2.49983 3.32631 3.35627 3.57722 3.75381 3.84016 3.89603 3.97339 4.18945 4.29647 4.33885 4.46083 4.52900 4.53340 4.60843 4.67619 4.68452 4.76130 4.84921 4.85573 4.94722 4.97349 5.06033 5.08663 5.10542 5.21346 5.38045 5.40918 5.43559 5.49070 5.53988 5.62995 5.74541 5.77254 6.21574 6.62565 7.11317 7.22678 7.81220 8.42643 9.25286 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.004419 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.222452 B = 6335.211042 C = 6623.611456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C -0.021 4.021 4 C -0.122 4.122 5 C -0.245 4.245 6 C 0.545 3.455 7 O -0.573 6.573 8 N -0.611 5.611 9 C 0.127 3.873 10 C -0.113 4.113 11 H 0.113 0.887 12 C 0.199 3.801 13 N -0.624 5.624 14 C -0.240 4.240 15 H 0.087 0.913 16 C -0.068 4.068 17 N -0.953 5.953 18 Si 0.977 3.023 19 H -0.274 1.274 20 H -0.299 1.299 21 H -0.276 1.276 22 C 0.139 3.861 23 C -0.093 4.093 24 H 0.135 0.865 25 C 0.118 3.882 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.003 0.997 38 H 0.005 0.995 39 H 0.244 0.756 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.047 0.953 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 6.957 -14.424 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.147 4.147 3 C -0.023 4.023 4 C -0.178 4.178 5 C -0.265 4.265 6 C 0.339 3.661 7 O -0.457 6.457 8 N -0.343 5.343 9 C 0.004 3.996 10 C -0.133 4.133 11 H 0.131 0.869 12 C 0.074 3.926 13 N -0.350 5.350 14 C -0.369 4.369 15 H 0.105 0.895 16 C -0.260 4.260 17 N -0.603 5.603 18 Si 0.805 3.195 19 H -0.200 1.200 20 H -0.225 1.225 21 H -0.202 1.202 22 C 0.013 3.987 23 C -0.113 4.113 24 H 0.153 0.847 25 C -0.005 4.005 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.163 0.837 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.021 0.979 38 H 0.024 0.976 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.944 6.268 -14.416 19.154 hybrid contribution 1.370 -0.765 0.909 1.813 sum -9.574 5.503 -13.506 17.446 Atomic orbital electron populations 1.21448 0.93765 1.01652 1.01210 1.20986 0.97580 0.93379 1.02758 1.22888 0.88610 0.95160 0.95628 1.21050 1.03745 1.00465 0.92518 1.22430 1.09899 1.03649 0.90572 1.18858 0.79229 0.83772 0.84213 1.90685 1.42610 1.24923 1.87442 1.48279 1.54200 1.26284 1.05502 1.21611 0.99730 0.96367 0.81878 1.22998 0.97200 0.95203 0.97882 0.86851 1.20736 0.85742 0.89333 0.96791 1.44514 1.03664 1.07871 1.78971 1.19442 0.83325 0.96457 1.37685 0.89516 1.25652 1.02354 0.95703 1.02315 1.70212 1.35124 1.01149 1.53774 0.85176 0.79886 0.76223 0.78218 1.20023 1.22532 1.20248 1.21404 0.91079 0.89425 0.96745 1.23014 0.98514 0.96771 0.92973 0.84673 1.22110 0.95032 0.85561 0.97785 0.92711 0.94255 0.91420 0.90201 0.91534 0.89332 0.89726 0.89413 0.83659 0.90670 0.94538 0.97878 0.97643 0.94687 0.93255 0.95119 0.93500 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 9.44 71.98 0.68 -2.17 16 2 C -0.11 -2.72 5.31 29.85 0.16 -2.56 16 3 C -0.02 -0.46 5.36 -17.62 -0.09 -0.56 16 4 C -0.12 -1.62 10.04 71.24 0.72 -0.91 16 5 C -0.25 -6.36 9.06 23.43 0.21 -6.14 16 6 C 0.55 18.60 7.62 86.57 0.66 19.26 16 7 O -0.57 -22.40 11.94 -4.09 -0.05 -22.45 16 8 N -0.61 -20.78 3.31 -821.23 -2.72 -23.50 16 9 C 0.13 4.59 6.23 86.59 0.54 5.13 16 10 C -0.11 -4.05 4.02 -9.49 -0.04 -4.09 16 11 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 12 C 0.20 9.88 4.75 86.58 0.41 10.29 16 13 N -0.62 -31.23 3.37 -697.85 -2.35 -33.58 16 14 C -0.24 -13.29 10.25 84.03 0.86 -12.43 16 15 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 16 C -0.07 -3.87 5.48 84.86 0.47 -3.41 16 17 N -0.95 -58.67 10.25 21.65 0.22 -58.45 16 18 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 C 0.14 5.13 6.37 86.65 0.55 5.68 16 23 C -0.09 -2.78 4.19 -9.25 -0.04 -2.82 16 24 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 25 C 0.12 3.51 5.68 86.73 0.49 4.00 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.04 1.10 6.86 -2.39 -0.02 1.08 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.59 8.13 -2.38 -0.02 1.57 16 30 H 0.07 2.19 5.61 -2.39 -0.01 2.17 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 0.93 8.07 -2.39 -0.02 0.91 16 33 H 0.09 0.92 8.12 -2.38 -0.02 0.90 16 34 H 0.15 3.06 6.91 -2.91 -0.02 3.03 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.04 1.55 7.44 -2.39 -0.02 1.54 16 37 H 0.00 0.17 7.45 -2.39 -0.02 0.15 16 38 H 0.01 0.31 6.51 -2.39 -0.02 0.30 16 39 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.05 1.72 7.95 -2.39 -0.02 1.70 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.70 7.72 -2.38 -0.02 1.68 16 43 H 0.11 2.30 7.27 -2.39 -0.02 2.28 16 Total: -1.00 -72.27 334.71 3.68 -68.59 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.98 Total: 11.99 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.58 Total: 9.28 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.85 Total: -115.53 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.05 Total: -22.45 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -72.27 3.68 -68.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754842083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.481 kcal (2) G-P(sol) polarization free energy of solvation -72.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds