Wall clock time and date at job start Tue Mar 31 2020 00:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47122 * 30.53564 * 3 2 1 5 5 C 1.53004 * 109.46893 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46893 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46894 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00071 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00107 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00135 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47140 * 178.08780 * 10 9 7 12 12 N 1.46506 * 112.84735 * 294.03326 * 11 10 9 13 13 C 1.36931 * 120.00135 * 294.81607 * 12 11 10 14 14 H 1.08007 * 120.00108 * 353.94247 * 13 12 11 15 15 C 1.38812 * 120.00408 * 173.94342 * 13 12 11 16 16 N 1.31623 * 119.99688 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00261 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47043 * 90.00115 * 17 15 13 19 19 H 1.48501 * 109.47271 * 209.99560 * 17 15 13 20 20 H 1.48500 * 109.47354 * 330.00230 * 17 15 13 21 21 C 1.53774 * 113.61704 * 162.84085 * 11 10 9 22 22 C 1.53956 * 87.02102 * 220.04773 * 21 11 10 23 23 C 1.53777 * 113.61691 * 65.22646 * 11 10 9 24 24 H 4.44647 * 5.63402 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.46842 * 270.53479 * 3 2 1 26 26 H 1.08992 * 109.46800 * 150.53733 * 3 2 1 27 27 H 1.08999 * 109.46667 * 59.99966 * 4 3 2 28 28 H 1.09004 * 109.47014 * 299.99835 * 4 3 2 29 29 H 1.08995 * 109.47039 * 59.99658 * 5 4 3 30 30 H 1.09000 * 109.46669 * 299.99857 * 5 4 3 31 31 H 1.08999 * 109.46667 * 59.99948 * 6 5 4 32 32 H 1.08996 * 109.47088 * 300.00145 * 6 5 4 33 33 H 0.96998 * 119.99589 * 359.73072 * 9 7 6 34 34 H 1.08994 * 109.47243 * 298.08409 * 10 9 7 35 35 H 1.08999 * 109.47069 * 58.08397 * 10 9 7 36 36 H 0.97002 * 119.99634 * 114.81561 * 12 11 10 37 37 H 0.96995 * 120.00119 * 179.97438 * 16 15 13 38 38 H 1.09003 * 113.61536 * 334.56431 * 21 11 10 39 39 H 1.08998 * 113.61923 * 105.46310 * 21 11 10 40 40 H 1.08997 * 113.53187 * 270.81080 * 22 21 11 41 41 H 1.09001 * 113.66736 * 139.93334 * 22 21 11 42 42 H 1.08995 * 113.61581 * 254.53231 * 23 11 10 43 43 H 1.09003 * 113.61470 * 25.44079 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2416 -0.7329 5 6 4.6866 -1.2412 -0.7323 6 6 5.1971 -2.4837 -1.4647 7 6 6.7041 -2.4830 -1.4646 8 8 7.3101 -1.5780 -0.9310 9 7 7.3785 -3.4885 -2.0567 10 6 8.8435 -3.4881 -2.0562 11 6 9.3541 -4.7546 -2.7462 12 7 9.0254 -5.9766 -2.0079 13 6 9.5711 -6.1972 -0.7715 14 1 10.3179 -5.5209 -0.3823 15 6 9.1646 -7.2901 -0.0183 16 7 8.2541 -8.1140 -0.4924 17 14 9.9095 -7.5914 1.6680 18 1 9.0994 -6.8940 2.6988 19 1 9.9214 -9.0492 1.9506 20 1 11.2999 -7.0705 1.6952 21 6 10.8288 -4.6713 -3.1739 22 6 10.4123 -5.4001 -4.4645 23 6 9.0034 -4.8255 -4.2418 24 1 -1.0498 -0.0004 0.0000 25 1 3.0093 -0.0088 1.0277 26 1 3.0088 0.8955 -0.5054 27 1 2.7932 -1.2321 -1.7605 28 1 2.7936 -2.1365 -0.2274 29 1 5.0495 -1.2508 0.2954 30 1 5.0498 -0.3462 -1.2376 31 1 4.8341 -2.4744 -2.4924 32 1 4.8338 -3.3784 -0.9591 33 1 6.8938 -4.2146 -2.4795 34 1 9.2068 -2.6111 -2.5918 35 1 9.2065 -3.4625 -1.0287 36 1 8.4212 -6.6293 -2.3949 37 1 7.9703 -8.8778 0.0337 38 1 11.1780 -3.6524 -3.3412 39 1 11.5005 -5.2513 -2.5411 40 1 10.4584 -6.4862 -4.3851 41 1 10.9029 -5.0189 -5.3601 42 1 8.2035 -5.5298 -4.4698 43 1 8.8526 -3.8488 -4.7017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754981607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:57 Heat of formation + Delta-G solvation = 22.956947 kcal Electronic energy + Delta-G solvation = -21199.874172 eV Core-core repulsion = 18053.658502 eV Total energy + Delta-G solvation = -3146.215670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.54961 -38.47889 -36.19665 -33.83307 -33.26255 -33.21180 -30.25812 -29.85377 -27.32887 -25.30686 -24.90310 -23.71522 -21.84088 -21.16137 -19.86959 -18.30527 -18.12838 -17.14009 -16.65004 -16.04687 -15.57961 -15.08909 -14.74023 -14.38472 -14.35932 -14.02825 -13.57162 -13.37136 -13.21850 -12.83564 -12.56711 -12.10953 -11.85177 -11.77736 -11.54412 -11.28551 -11.22837 -11.01592 -10.86129 -10.70479 -10.37218 -10.35344 -10.25462 -10.23323 -10.11155 -9.74029 -9.50915 -9.38644 -8.88352 -8.44379 -7.05190 -5.83967 -3.13501 2.63031 2.66587 3.09198 3.40946 3.47336 3.47596 3.69243 4.19464 4.52980 4.84585 4.86594 4.97089 5.18120 5.23191 5.27301 5.28538 5.31573 5.42239 5.46664 5.53937 5.64193 5.70683 5.75527 5.79803 5.87347 5.89662 6.06767 6.12855 6.18593 6.20001 6.31538 6.32567 6.39182 6.55106 6.72014 6.91134 6.98490 7.09130 7.43915 7.68837 8.04852 8.34956 8.71238 9.46250 9.99832 10.35155 11.38112 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.003734 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.208819 B = 7497.317329 C = 8695.373300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.103 4.103 6 C -0.141 4.141 7 C 0.507 3.493 8 O -0.557 6.557 9 N -0.706 5.706 10 C 0.120 3.880 11 C 0.174 3.826 12 N -0.699 5.699 13 C -0.234 4.234 14 H 0.070 0.930 15 C -0.009 4.009 16 N -0.931 5.931 17 Si 0.904 3.096 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.151 4.151 22 C -0.129 4.129 23 C -0.144 4.144 24 H 0.215 0.785 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.400 0.600 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 11.761 -5.869 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.181 4.181 3 C -0.053 4.053 4 C -0.152 4.152 5 C -0.140 4.140 6 C -0.181 4.181 7 C 0.294 3.706 8 O -0.436 6.436 9 N -0.355 5.355 10 C -0.006 4.006 11 C 0.081 3.919 12 N -0.340 5.340 13 C -0.365 4.365 14 H 0.088 0.912 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.735 3.265 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.192 4.192 22 C -0.166 4.166 23 C -0.182 4.182 24 H 0.232 0.768 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.234 0.766 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.082 12.364 -5.318 15.700 hybrid contribution -0.268 -0.914 0.727 1.198 sum -8.351 11.450 -4.592 14.897 Atomic orbital electron populations 1.24884 0.95979 1.01316 1.01605 1.23283 0.94707 1.00087 0.99986 1.18796 0.84379 0.99735 1.02342 1.21575 0.95663 0.97247 1.00750 1.21319 0.93500 0.97442 1.01788 1.21653 0.92730 1.00920 1.02832 1.20594 0.89966 0.82023 0.78062 1.90653 1.70675 1.36848 1.45470 1.45797 1.07927 1.24674 1.57117 1.21818 0.79134 0.97765 1.01892 1.20816 0.93931 0.87648 0.89530 1.42057 1.55745 1.18053 1.18138 1.19097 1.16811 1.07879 0.92729 0.91179 1.24719 0.99073 0.98221 0.98499 1.69650 1.33708 1.16576 1.38004 0.86231 0.78678 0.76979 0.84563 1.21701 1.21821 1.20707 1.23343 0.98832 0.99416 0.97577 1.22664 0.96315 1.00598 0.97037 1.23139 0.97706 1.00583 0.96780 0.76798 0.89366 0.89460 0.91561 0.91394 0.90930 0.91112 0.89312 0.88842 0.76606 0.92993 0.91452 0.77946 0.93511 0.91350 0.90727 0.90058 0.92750 0.91681 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.05 19.25 29.55 0.57 -1.49 16 2 C -0.18 -1.87 13.34 -37.12 -0.50 -2.37 16 3 C -0.02 -0.14 5.70 -29.52 -0.17 -0.31 16 4 C -0.11 -1.07 5.17 -26.73 -0.14 -1.21 16 5 C -0.10 -1.15 4.50 -26.73 -0.12 -1.27 16 6 C -0.14 -1.71 5.70 -27.88 -0.16 -1.87 16 7 C 0.51 8.43 7.83 -10.99 -0.09 8.35 16 8 O -0.56 -11.18 15.98 5.55 0.09 -11.09 16 9 N -0.71 -11.81 5.44 -60.30 -0.33 -12.14 16 10 C 0.12 2.21 5.03 -4.04 -0.02 2.19 16 11 C 0.17 3.17 0.79 -131.01 -0.10 3.07 16 12 N -0.70 -15.92 5.18 -46.48 -0.24 -16.16 16 13 C -0.23 -6.13 9.06 -15.06 -0.14 -6.27 16 14 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 15 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 16 N -0.93 -26.82 13.07 55.49 0.73 -26.10 16 17 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.15 -2.58 7.29 -25.83 -0.19 -2.77 16 22 C -0.13 -1.98 8.00 -25.83 -0.21 -2.19 16 23 C -0.14 -2.17 7.11 -25.92 -0.18 -2.36 16 24 H 0.22 1.25 7.80 -54.10 -0.42 0.83 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.40 6.21 8.33 -40.82 -0.34 5.87 16 34 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 35 H 0.07 1.46 7.85 -51.93 -0.41 1.05 16 36 H 0.39 9.36 7.87 -40.82 -0.32 9.04 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 39 H 0.07 1.43 7.86 -51.93 -0.41 1.02 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -30.87 364.31 -8.17 -39.04 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -7.34 Total: 12.70 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.53 Total: -8.84 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.16 Total: -54.40 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.87 -8.17 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754981607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.999 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds