Wall clock time and date at job start Tue Mar 31 2020 00:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47122 * 30.53564 * 3 2 1 5 5 C 1.53004 * 109.46893 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46893 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46894 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00071 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00107 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00135 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47140 * 178.08780 * 10 9 7 12 12 N 1.46506 * 112.84735 * 294.03326 * 11 10 9 13 13 C 1.36931 * 120.00135 * 294.81607 * 12 11 10 14 14 H 1.08007 * 120.00108 * 353.94247 * 13 12 11 15 15 C 1.38812 * 120.00408 * 173.94342 * 13 12 11 16 16 N 1.31623 * 119.99688 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00261 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47043 * 90.00115 * 17 15 13 19 19 H 1.48501 * 109.47271 * 209.99560 * 17 15 13 20 20 H 1.48500 * 109.47354 * 330.00230 * 17 15 13 21 21 C 1.53774 * 113.61704 * 162.84085 * 11 10 9 22 22 C 1.53956 * 87.02102 * 220.04773 * 21 11 10 23 23 C 1.53777 * 113.61691 * 65.22646 * 11 10 9 24 24 H 4.44647 * 5.63402 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.46842 * 270.53479 * 3 2 1 26 26 H 1.08992 * 109.46800 * 150.53733 * 3 2 1 27 27 H 1.08999 * 109.46667 * 59.99966 * 4 3 2 28 28 H 1.09004 * 109.47014 * 299.99835 * 4 3 2 29 29 H 1.08995 * 109.47039 * 59.99658 * 5 4 3 30 30 H 1.09000 * 109.46669 * 299.99857 * 5 4 3 31 31 H 1.08999 * 109.46667 * 59.99948 * 6 5 4 32 32 H 1.08996 * 109.47088 * 300.00145 * 6 5 4 33 33 H 0.96998 * 119.99589 * 359.73072 * 9 7 6 34 34 H 1.08994 * 109.47243 * 298.08409 * 10 9 7 35 35 H 1.08999 * 109.47069 * 58.08397 * 10 9 7 36 36 H 0.97002 * 119.99634 * 114.81561 * 12 11 10 37 37 H 0.96995 * 120.00119 * 179.97438 * 16 15 13 38 38 H 1.09003 * 113.61536 * 334.56431 * 21 11 10 39 39 H 1.08998 * 113.61923 * 105.46310 * 21 11 10 40 40 H 1.08997 * 113.53187 * 270.81080 * 22 21 11 41 41 H 1.09001 * 113.66736 * 139.93334 * 22 21 11 42 42 H 1.08995 * 113.61581 * 254.53231 * 23 11 10 43 43 H 1.09003 * 113.61470 * 25.44079 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2416 -0.7329 5 6 4.6866 -1.2412 -0.7323 6 6 5.1971 -2.4837 -1.4647 7 6 6.7041 -2.4830 -1.4646 8 8 7.3101 -1.5780 -0.9310 9 7 7.3785 -3.4885 -2.0567 10 6 8.8435 -3.4881 -2.0562 11 6 9.3541 -4.7546 -2.7462 12 7 9.0254 -5.9766 -2.0079 13 6 9.5711 -6.1972 -0.7715 14 1 10.3179 -5.5209 -0.3823 15 6 9.1646 -7.2901 -0.0183 16 7 8.2541 -8.1140 -0.4924 17 14 9.9095 -7.5914 1.6680 18 1 9.0994 -6.8940 2.6988 19 1 9.9214 -9.0492 1.9506 20 1 11.2999 -7.0705 1.6952 21 6 10.8288 -4.6713 -3.1739 22 6 10.4123 -5.4001 -4.4645 23 6 9.0034 -4.8255 -4.2418 24 1 -1.0498 -0.0004 0.0000 25 1 3.0093 -0.0088 1.0277 26 1 3.0088 0.8955 -0.5054 27 1 2.7932 -1.2321 -1.7605 28 1 2.7936 -2.1365 -0.2274 29 1 5.0495 -1.2508 0.2954 30 1 5.0498 -0.3462 -1.2376 31 1 4.8341 -2.4744 -2.4924 32 1 4.8338 -3.3784 -0.9591 33 1 6.8938 -4.2146 -2.4795 34 1 9.2068 -2.6111 -2.5918 35 1 9.2065 -3.4625 -1.0287 36 1 8.4212 -6.6293 -2.3949 37 1 7.9703 -8.8778 0.0337 38 1 11.1780 -3.6524 -3.3412 39 1 11.5005 -5.2513 -2.5411 40 1 10.4584 -6.4862 -4.3851 41 1 10.9029 -5.0189 -5.3601 42 1 8.2035 -5.5298 -4.4698 43 1 8.8526 -3.8488 -4.7017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754981607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:57 Heat of formation + Delta-G solvation = 4.165560 kcal Electronic energy + Delta-G solvation = -21200.689028 eV Core-core repulsion = 18053.658502 eV Total energy + Delta-G solvation = -3147.030526 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93565 -39.86173 -37.02070 -35.27553 -35.15854 -34.06260 -31.93818 -30.96240 -28.68938 -26.71559 -26.08281 -25.38584 -23.11998 -22.15158 -21.16106 -19.70750 -19.11468 -18.88584 -17.94786 -17.09073 -16.95053 -16.55151 -16.05899 -15.81267 -15.58796 -15.17301 -15.02587 -14.76922 -14.49504 -14.10153 -13.74088 -13.55167 -13.08050 -12.96462 -12.92355 -12.72453 -12.54307 -12.50297 -12.16230 -12.15724 -11.93675 -11.59929 -11.58632 -11.47912 -11.13206 -10.97992 -10.95984 -10.84926 -10.62474 -9.88975 -8.97826 -7.94306 -5.20646 1.43973 1.46035 1.52416 1.77088 1.89902 1.94420 2.42354 2.54806 3.37781 3.51547 3.75555 3.82080 3.87918 3.98562 4.04290 4.06292 4.11873 4.24752 4.43293 4.46278 4.62580 4.68890 4.79529 4.84304 4.86334 4.91694 4.93239 4.94340 5.03200 5.11469 5.13917 5.22934 5.32036 5.35420 5.43101 5.45251 5.55670 5.66619 5.72785 6.30363 6.72173 6.73638 7.36455 7.39039 8.10626 8.34543 9.28060 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.003734 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.208819 B = 7497.317329 C = 8695.373300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.217 4.217 3 C -0.017 4.017 4 C -0.104 4.104 5 C -0.097 4.097 6 C -0.134 4.134 7 C 0.501 3.499 8 O -0.596 6.596 9 N -0.704 5.704 10 C 0.129 3.871 11 C 0.159 3.841 12 N -0.704 5.704 13 C -0.221 4.221 14 H 0.063 0.937 15 C -0.066 4.066 16 N -0.961 5.961 17 Si 0.955 3.045 18 H -0.295 1.295 19 H -0.295 1.295 20 H -0.275 1.275 21 C -0.152 4.152 22 C -0.121 4.121 23 C -0.125 4.125 24 H 0.243 0.757 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.407 0.593 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.378 0.622 37 H 0.249 0.751 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 12.807 -7.403 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.217 4.217 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.135 4.135 6 C -0.173 4.173 7 C 0.289 3.711 8 O -0.478 6.478 9 N -0.354 5.354 10 C 0.002 3.998 11 C 0.067 3.933 12 N -0.344 5.344 13 C -0.353 4.353 14 H 0.081 0.919 15 C -0.259 4.259 16 N -0.611 5.611 17 Si 0.786 3.214 18 H -0.222 1.222 19 H -0.221 1.221 20 H -0.200 1.200 21 C -0.192 4.192 22 C -0.158 4.158 23 C -0.163 4.163 24 H 0.259 0.741 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.243 0.757 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.211 0.789 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.942 13.434 -6.878 17.542 hybrid contribution 0.026 -1.146 1.172 1.640 sum -8.916 12.288 -5.705 16.218 Atomic orbital electron populations 1.25693 0.96933 1.00123 1.00421 1.23716 0.95530 1.01261 1.01153 1.18807 0.84156 0.99932 1.02462 1.21460 0.93928 0.97348 1.01427 1.21254 0.94818 0.96951 1.00478 1.21699 0.89125 1.01505 1.04986 1.21413 0.91788 0.81074 0.76837 1.90633 1.71885 1.38294 1.46987 1.45821 1.07331 1.25027 1.57175 1.21626 0.80281 0.98330 0.99570 1.21114 0.95292 0.85670 0.91220 1.42091 1.55333 1.19509 1.17463 1.19271 1.15587 1.06777 0.93679 0.91857 1.25304 1.00342 0.98862 1.01346 1.69759 1.35367 1.17125 1.38894 0.85408 0.78198 0.76397 0.81397 1.22228 1.22119 1.20028 1.23373 0.97072 1.00700 0.98034 1.22592 0.96629 0.99309 0.97310 1.23091 0.97631 1.02104 0.93477 0.74096 0.89399 0.88643 0.90482 0.91615 0.92818 0.91380 0.86157 0.88229 0.75746 0.91420 0.95560 0.78907 0.94173 0.88876 0.93576 0.92083 0.89610 0.91358 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.60 19.25 74.32 1.43 -2.17 16 2 C -0.22 -4.22 13.34 31.12 0.42 -3.80 16 3 C -0.02 -0.29 5.70 28.79 0.16 -0.13 16 4 C -0.10 -1.79 5.17 30.60 0.16 -1.63 16 5 C -0.10 -2.08 4.50 30.60 0.14 -1.95 16 6 C -0.13 -3.01 5.70 29.85 0.17 -2.84 16 7 C 0.50 16.26 7.83 87.66 0.69 16.94 16 8 O -0.60 -23.98 15.98 -3.05 -0.05 -24.03 16 9 N -0.70 -22.87 5.44 -463.06 -2.52 -25.39 16 10 C 0.13 4.64 5.03 86.38 0.43 5.08 16 11 C 0.16 5.61 0.79 4.13 0.00 5.62 16 12 N -0.70 -32.16 5.18 -300.97 -1.56 -33.72 16 13 C -0.22 -11.72 9.06 84.03 0.76 -10.96 16 14 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 15 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 16 N -0.96 -56.17 13.07 21.65 0.28 -55.88 16 17 Si 0.96 46.20 29.55 68.60 2.03 48.23 16 18 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 19 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 C -0.15 -4.95 7.29 31.18 0.23 -4.72 16 22 C -0.12 -3.42 8.00 31.18 0.25 -3.17 16 23 C -0.13 -3.41 7.11 31.12 0.22 -3.19 16 24 H 0.24 2.20 7.80 -4.43 -0.03 2.17 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 30 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 31 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.41 12.04 8.33 -92.71 -0.77 11.27 16 34 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 35 H 0.03 1.15 7.85 -2.39 -0.02 1.13 16 36 H 0.38 18.41 7.87 -92.71 -0.73 17.68 16 37 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.09 2.57 8.04 -2.39 -0.02 2.55 16 39 H 0.05 1.76 7.86 -2.39 -0.02 1.74 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 43 H 0.10 2.34 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -67.63 364.31 3.19 -64.43 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -0.52 Total: 36.49 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 5.53 Total: -10.13 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -3.80 Total: -114.99 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -67.63 3.19 -64.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754981607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.600 kcal (2) G-P(sol) polarization free energy of solvation -67.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds