Wall clock time and date at job start Tue Mar 31 2020 00:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47158 * 298.47231 * 3 2 1 5 5 C 1.53002 * 109.47212 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46816 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00173 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99498 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99836 * 179.72685 * 8 6 5 10 10 H 1.08994 * 109.48908 * 325.31945 * 9 8 6 11 11 C 1.52574 * 109.48937 * 205.27570 * 9 8 6 12 12 C 1.47094 * 114.32500 * 155.01797 * 11 9 8 13 13 C 1.54868 * 110.32079 * 62.80538 * 12 11 9 14 14 N 1.44582 * 109.59962 * 288.73065 * 13 12 11 15 15 C 1.36929 * 118.64371 * 270.72582 * 14 13 12 16 16 H 1.08003 * 120.00469 * 26.49419 * 15 14 13 17 17 C 1.38818 * 120.00191 * 206.48972 * 15 14 13 18 18 N 1.31620 * 119.99429 * 15.67191 * 17 15 14 19 19 Si 1.86795 * 120.00259 * 195.67440 * 17 15 14 20 20 H 1.48505 * 109.47054 * 90.00171 * 19 17 15 21 21 H 1.48496 * 109.47150 * 209.99947 * 19 17 15 22 22 H 1.48502 * 109.47129 * 330.00178 * 19 17 15 23 23 C 1.47609 * 122.70921 * 90.74746 * 14 13 12 24 24 C 1.50873 * 109.48961 * 85.39244 * 9 8 6 25 25 H 4.44651 * 5.63328 * 180.02562 * 4 1 2 26 26 H 1.08994 * 109.46788 * 178.47595 * 3 2 1 27 27 H 1.08997 * 109.47093 * 58.47300 * 3 2 1 28 28 H 1.09000 * 109.47122 * 60.00033 * 4 3 2 29 29 H 1.09003 * 109.47309 * 300.00439 * 4 3 2 30 30 H 1.08994 * 109.46821 * 60.00310 * 5 4 3 31 31 H 1.08997 * 109.47006 * 300.00048 * 5 4 3 32 32 H 0.97006 * 120.00219 * 0.02562 * 8 6 5 33 33 H 1.08995 * 108.51492 * 276.27329 * 11 9 8 34 34 H 1.09004 * 108.50891 * 33.92570 * 11 9 8 35 35 H 1.09000 * 109.32688 * 183.06282 * 12 11 9 36 36 H 1.09000 * 109.33013 * 302.54366 * 12 11 9 37 37 H 1.08996 * 109.44794 * 48.76992 * 13 12 11 38 38 H 1.08999 * 109.44953 * 168.69569 * 13 12 11 39 39 H 0.97005 * 119.99544 * 179.97438 * 18 17 15 40 40 H 1.08998 * 108.94628 * 78.53755 * 23 14 13 41 41 H 1.08996 * 108.94331 * 197.24782 * 23 14 13 42 42 H 1.08996 * 109.37216 * 332.04246 * 24 9 8 43 43 H 1.09003 * 109.37231 * 91.66364 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6868 1.2681 5 6 4.6863 -0.6856 1.2684 6 6 5.1889 -1.3622 2.5177 7 8 4.4009 -1.8016 3.3282 8 7 6.5140 -1.4789 2.7342 9 6 7.0026 -2.1313 3.9515 10 1 6.3276 -1.9106 4.7784 11 6 8.3988 -1.6123 4.2818 12 6 8.7620 -1.7131 5.7037 13 6 8.7895 -3.1965 6.1478 14 7 7.4394 -3.7103 6.2062 15 6 6.7404 -3.5876 7.3772 16 1 6.9757 -2.7892 8.0655 17 6 5.7291 -4.4891 7.6798 18 7 5.6395 -5.6236 7.0186 19 14 4.4955 -4.0921 9.0251 20 1 3.3375 -3.3714 8.4379 21 1 4.0265 -5.3528 9.6544 22 1 5.1418 -3.2366 10.0526 23 6 6.7836 -4.3623 5.0557 24 6 7.0621 -3.6230 3.7340 25 1 -1.0499 -0.0003 0.0001 26 1 3.0088 1.0281 -0.0273 27 1 3.0095 -0.5365 -0.8759 28 1 2.7934 -1.7143 1.2955 29 1 2.7927 -0.1497 2.1441 30 1 5.0487 0.3420 1.2413 31 1 5.0502 -1.2225 0.3924 32 1 7.1442 -1.1270 2.0861 33 1 9.1252 -2.1776 3.6981 34 1 8.4578 -0.5650 3.9853 35 1 9.7472 -1.2725 5.8564 36 1 8.0302 -1.1707 6.3023 37 1 9.3690 -3.7791 5.4317 38 1 9.2494 -3.2718 7.1332 39 1 4.9330 -6.2538 7.2302 40 1 7.1494 -5.3858 4.9731 41 1 5.7075 -4.3843 5.2275 42 1 6.3147 -3.9107 2.9945 43 1 8.0524 -3.8960 3.3692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755024410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:06 Heat of formation + Delta-G solvation = 20.928894 kcal Electronic energy + Delta-G solvation = -21989.975939 eV Core-core repulsion = 18843.672326 eV Total energy + Delta-G solvation = -3146.303613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.71871 -37.71096 -35.68200 -34.56838 -32.83645 -32.36758 -30.90240 -30.38139 -27.97952 -25.87997 -24.03595 -23.25449 -22.25211 -20.22364 -19.80978 -19.16993 -18.31237 -16.61761 -16.56418 -16.01520 -15.75716 -15.00727 -14.49759 -14.32154 -14.10754 -13.72379 -13.48070 -13.17420 -12.94967 -12.65810 -12.48109 -12.36428 -11.87378 -11.64708 -11.49721 -11.05787 -11.03262 -10.81333 -10.72585 -10.37211 -10.33091 -10.23238 -10.15477 -10.02270 -9.88551 -9.64857 -9.52716 -9.38909 -8.64080 -8.27350 -6.57803 -5.68003 -3.11842 2.66532 2.70785 2.97642 3.47148 3.49692 3.53690 3.54847 4.23146 4.60240 4.79895 4.89721 4.97437 5.20078 5.31894 5.35206 5.37137 5.45927 5.49265 5.54106 5.62533 5.79512 5.89926 6.02140 6.06057 6.16038 6.22636 6.25072 6.36335 6.48811 6.53554 6.65465 6.75347 6.82926 6.89704 7.06465 7.13000 7.48944 7.53157 7.80855 7.86276 7.93471 8.57523 8.60649 9.34076 10.01216 10.45458 11.39528 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.004579 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.730319 B = 6112.860645 C = 7382.494572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.184 4.184 3 C -0.013 4.013 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.503 3.497 7 O -0.527 6.527 8 N -0.731 5.731 9 C 0.153 3.847 10 H 0.102 0.898 11 C -0.105 4.105 12 C -0.146 4.146 13 C 0.157 3.843 14 N -0.591 5.591 15 C -0.260 4.260 16 H 0.064 0.936 17 C 0.007 3.993 18 N -0.903 5.903 19 Si 0.899 3.101 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.280 1.280 23 C 0.183 3.817 24 C -0.146 4.146 25 H 0.216 0.784 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.390 0.610 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.025 0.975 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 11.233 -15.205 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.184 4.184 3 C -0.050 4.050 4 C -0.139 4.139 5 C -0.180 4.180 6 C 0.288 3.712 7 O -0.402 6.402 8 N -0.382 5.382 9 C 0.049 3.951 10 H 0.120 0.880 11 C -0.144 4.144 12 C -0.187 4.187 13 C 0.028 3.972 14 N -0.312 5.312 15 C -0.389 4.389 16 H 0.082 0.918 17 C -0.191 4.191 18 N -0.547 5.547 19 Si 0.729 3.271 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.057 3.943 24 C -0.186 4.186 25 H 0.233 0.767 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.223 0.777 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.302 10.736 -14.584 18.112 hybrid contribution -0.552 0.349 0.253 0.701 sum -0.250 11.085 -14.331 18.119 Atomic orbital electron populations 1.24902 0.96017 1.01242 1.00957 1.23134 0.94630 1.00278 1.00358 1.18780 0.84832 1.02014 0.99333 1.21287 0.93197 1.02425 0.96986 1.21670 0.97271 1.02009 0.97026 1.20586 0.82644 0.79917 0.88019 1.90796 1.55062 1.47786 1.46602 1.46357 1.06705 1.60747 1.24355 1.20513 0.95877 0.92183 0.86491 0.88042 1.20562 0.95658 0.99526 0.98606 1.21455 0.99845 1.02019 0.95369 1.20691 0.87433 0.90682 0.98359 1.43670 1.09541 1.68616 1.09407 1.19178 1.14161 1.08132 0.97456 0.91778 1.25003 1.00876 0.94834 0.98407 1.70057 1.33484 1.07659 1.43533 0.86345 0.82062 0.77150 0.81542 1.21348 1.21841 1.20512 1.20945 0.99142 0.92136 0.82046 1.22435 0.99939 0.95050 1.01170 0.76741 0.89602 0.89566 0.90599 0.90672 0.89078 0.89014 0.77674 0.92877 0.93509 0.93082 0.91974 0.95019 0.93607 0.93749 0.95728 0.90404 0.92708 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.20 19.25 29.55 0.57 -1.63 16 2 C -0.18 -2.04 13.34 -37.12 -0.50 -2.53 16 3 C -0.01 -0.11 5.70 -29.51 -0.17 -0.28 16 4 C -0.10 -1.13 4.46 -26.73 -0.12 -1.25 16 5 C -0.14 -1.38 5.70 -27.88 -0.16 -1.54 16 6 C 0.50 7.73 7.66 -10.99 -0.08 7.64 16 7 O -0.53 -11.13 15.64 5.56 0.09 -11.04 16 8 N -0.73 -10.30 4.93 -55.07 -0.27 -10.57 16 9 C 0.15 2.74 2.07 -69.21 -0.14 2.60 16 10 H 0.10 2.33 6.91 -51.93 -0.36 1.97 16 11 C -0.11 -1.63 4.69 -29.78 -0.14 -1.77 16 12 C -0.15 -2.52 5.74 -28.58 -0.16 -2.69 16 13 C 0.16 3.24 5.65 -4.08 -0.02 3.22 16 14 N -0.59 -14.85 2.27 -172.06 -0.39 -15.24 16 15 C -0.26 -7.26 9.44 -15.06 -0.14 -7.41 16 16 H 0.06 1.77 7.88 -52.48 -0.41 1.36 16 17 C 0.01 0.22 4.87 -17.43 -0.08 0.13 16 18 N -0.90 -27.09 11.01 55.49 0.61 -26.48 16 19 Si 0.90 22.80 29.58 -169.99 -5.03 17.77 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.18 4.54 4.67 -2.92 -0.01 4.53 16 24 C -0.15 -2.87 5.39 -27.29 -0.15 -3.01 16 25 H 0.22 1.48 7.80 -54.09 -0.42 1.06 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 29 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.39 3.97 8.60 -40.82 -0.35 3.62 16 33 H 0.05 0.76 7.36 -51.93 -0.38 0.37 16 34 H 0.05 0.62 8.04 -51.93 -0.42 0.21 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 38 H 0.05 0.96 7.99 -51.93 -0.41 0.55 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.02 0.66 8.03 -51.93 -0.42 0.24 16 41 H 0.08 2.24 6.33 -51.93 -0.33 1.91 16 42 H 0.05 1.09 7.86 -51.93 -0.41 0.68 16 43 H 0.04 0.80 7.32 -51.93 -0.38 0.42 16 LS Contribution 348.93 15.07 5.26 5.26 Total: -1.00 -33.79 348.93 -8.27 -42.06 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.23 Total: 2.24 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.31 Total: -4.00 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.05 Total: -52.29 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.79 -8.27 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755024410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.989 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds