Wall clock time and date at job start Tue Mar 31 2020 00:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47158 * 298.47231 * 3 2 1 5 5 C 1.53002 * 109.47212 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46816 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00173 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99498 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99836 * 179.72685 * 8 6 5 10 10 H 1.08994 * 109.48908 * 325.31945 * 9 8 6 11 11 C 1.52574 * 109.48937 * 205.27570 * 9 8 6 12 12 C 1.47094 * 114.32500 * 155.01797 * 11 9 8 13 13 C 1.54868 * 110.32079 * 62.80538 * 12 11 9 14 14 N 1.44582 * 109.59962 * 288.73065 * 13 12 11 15 15 C 1.36929 * 118.64371 * 270.72582 * 14 13 12 16 16 H 1.08003 * 120.00469 * 26.49419 * 15 14 13 17 17 C 1.38818 * 120.00191 * 206.48972 * 15 14 13 18 18 N 1.31620 * 119.99429 * 15.67191 * 17 15 14 19 19 Si 1.86795 * 120.00259 * 195.67440 * 17 15 14 20 20 H 1.48505 * 109.47054 * 90.00171 * 19 17 15 21 21 H 1.48496 * 109.47150 * 209.99947 * 19 17 15 22 22 H 1.48502 * 109.47129 * 330.00178 * 19 17 15 23 23 C 1.47609 * 122.70921 * 90.74746 * 14 13 12 24 24 C 1.50873 * 109.48961 * 85.39244 * 9 8 6 25 25 H 4.44651 * 5.63328 * 180.02562 * 4 1 2 26 26 H 1.08994 * 109.46788 * 178.47595 * 3 2 1 27 27 H 1.08997 * 109.47093 * 58.47300 * 3 2 1 28 28 H 1.09000 * 109.47122 * 60.00033 * 4 3 2 29 29 H 1.09003 * 109.47309 * 300.00439 * 4 3 2 30 30 H 1.08994 * 109.46821 * 60.00310 * 5 4 3 31 31 H 1.08997 * 109.47006 * 300.00048 * 5 4 3 32 32 H 0.97006 * 120.00219 * 0.02562 * 8 6 5 33 33 H 1.08995 * 108.51492 * 276.27329 * 11 9 8 34 34 H 1.09004 * 108.50891 * 33.92570 * 11 9 8 35 35 H 1.09000 * 109.32688 * 183.06282 * 12 11 9 36 36 H 1.09000 * 109.33013 * 302.54366 * 12 11 9 37 37 H 1.08996 * 109.44794 * 48.76992 * 13 12 11 38 38 H 1.08999 * 109.44953 * 168.69569 * 13 12 11 39 39 H 0.97005 * 119.99544 * 179.97438 * 18 17 15 40 40 H 1.08998 * 108.94628 * 78.53755 * 23 14 13 41 41 H 1.08996 * 108.94331 * 197.24782 * 23 14 13 42 42 H 1.08996 * 109.37216 * 332.04246 * 24 9 8 43 43 H 1.09003 * 109.37231 * 91.66364 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6868 1.2681 5 6 4.6863 -0.6856 1.2684 6 6 5.1889 -1.3622 2.5177 7 8 4.4009 -1.8016 3.3282 8 7 6.5140 -1.4789 2.7342 9 6 7.0026 -2.1313 3.9515 10 1 6.3276 -1.9106 4.7784 11 6 8.3988 -1.6123 4.2818 12 6 8.7620 -1.7131 5.7037 13 6 8.7895 -3.1965 6.1478 14 7 7.4394 -3.7103 6.2062 15 6 6.7404 -3.5876 7.3772 16 1 6.9757 -2.7892 8.0655 17 6 5.7291 -4.4891 7.6798 18 7 5.6395 -5.6236 7.0186 19 14 4.4955 -4.0921 9.0251 20 1 3.3375 -3.3714 8.4379 21 1 4.0265 -5.3528 9.6544 22 1 5.1418 -3.2366 10.0526 23 6 6.7836 -4.3623 5.0557 24 6 7.0621 -3.6230 3.7340 25 1 -1.0499 -0.0003 0.0001 26 1 3.0088 1.0281 -0.0273 27 1 3.0095 -0.5365 -0.8759 28 1 2.7934 -1.7143 1.2955 29 1 2.7927 -0.1497 2.1441 30 1 5.0487 0.3420 1.2413 31 1 5.0502 -1.2225 0.3924 32 1 7.1442 -1.1270 2.0861 33 1 9.1252 -2.1776 3.6981 34 1 8.4578 -0.5650 3.9853 35 1 9.7472 -1.2725 5.8564 36 1 8.0302 -1.1707 6.3023 37 1 9.3690 -3.7791 5.4317 38 1 9.2494 -3.2718 7.1332 39 1 4.9330 -6.2538 7.2302 40 1 7.1494 -5.3858 4.9731 41 1 5.7075 -4.3843 5.2275 42 1 6.3147 -3.9107 2.9945 43 1 8.0524 -3.8960 3.3692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755024410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:05 Heat of formation + Delta-G solvation = -1.162460 kcal Electronic energy + Delta-G solvation = -21990.933892 eV Core-core repulsion = 18843.672326 eV Total energy + Delta-G solvation = -3147.261566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03453 -39.25440 -36.62865 -36.15652 -34.47059 -33.30372 -32.67550 -32.05014 -28.95302 -27.64937 -25.59384 -25.10692 -23.30212 -21.64063 -21.11013 -20.88036 -19.09830 -18.56311 -17.71593 -17.39181 -16.84000 -16.72915 -16.10173 -15.69927 -15.31403 -15.27219 -14.83256 -14.62049 -14.36655 -14.01817 -13.65340 -13.59389 -13.46628 -13.08299 -13.00796 -12.79549 -12.52378 -12.46462 -12.09756 -12.01667 -11.92210 -11.74841 -11.49920 -11.37929 -11.34306 -11.16453 -10.96862 -10.70634 -10.45083 -9.97840 -8.65365 -7.86916 -5.32058 1.38559 1.44240 1.49427 1.78988 1.84593 1.92193 2.36146 2.48965 3.27657 3.53786 3.68479 3.82127 3.87905 4.08805 4.12509 4.18054 4.40903 4.48136 4.49174 4.55854 4.70349 4.72022 4.73580 4.81613 4.87573 4.95791 5.03725 5.18051 5.21044 5.21460 5.24760 5.27327 5.34771 5.39627 5.54124 5.59523 5.66734 5.74889 5.78199 6.40278 6.71897 6.74663 7.17875 7.48624 7.96380 8.33995 9.17955 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.004579 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.730319 B = 6112.860645 C = 7382.494572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.217 4.217 3 C -0.007 4.007 4 C -0.098 4.098 5 C -0.123 4.123 6 C 0.494 3.506 7 O -0.597 6.597 8 N -0.712 5.712 9 C 0.160 3.840 10 H 0.044 0.956 11 C -0.102 4.102 12 C -0.133 4.133 13 C 0.147 3.853 14 N -0.604 5.604 15 C -0.260 4.260 16 H 0.065 0.935 17 C -0.051 4.051 18 N -0.935 5.935 19 Si 0.956 3.044 20 H -0.298 1.298 21 H -0.291 1.291 22 H -0.262 1.262 23 C 0.195 3.805 24 C -0.130 4.130 25 H 0.239 0.761 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.417 0.583 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.049 0.951 38 H 0.038 0.962 39 H 0.246 0.754 40 H -0.005 1.005 41 H 0.025 0.975 42 H 0.047 0.953 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.158 13.790 -17.532 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.217 4.217 3 C -0.043 4.043 4 C -0.137 4.137 5 C -0.163 4.163 6 C 0.282 3.718 7 O -0.477 6.477 8 N -0.365 5.365 9 C 0.055 3.945 10 H 0.062 0.938 11 C -0.140 4.140 12 C -0.174 4.174 13 C 0.021 3.979 14 N -0.327 5.327 15 C -0.391 4.391 16 H 0.083 0.917 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.785 3.215 20 H -0.226 1.226 21 H -0.217 1.217 22 H -0.187 1.187 23 C 0.070 3.930 24 C -0.170 4.170 25 H 0.255 0.745 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.013 0.987 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.558 13.345 -16.947 21.722 hybrid contribution -1.214 -0.441 0.980 1.621 sum 1.344 12.904 -15.967 20.574 Atomic orbital electron populations 1.25715 0.97166 1.00872 1.00380 1.23929 0.96013 1.00785 1.00953 1.18852 0.83553 1.03420 0.98459 1.21196 0.94545 1.00503 0.97430 1.21689 0.95752 1.03955 0.94877 1.21686 0.82346 0.78872 0.88897 1.90785 1.56815 1.50787 1.49355 1.46088 1.07047 1.59793 1.23563 1.20123 0.96596 0.91266 0.86491 0.93757 1.20509 0.93884 1.01985 0.97598 1.21301 1.01293 0.98572 0.96193 1.20966 0.85027 0.93168 0.98762 1.43845 1.11355 1.68844 1.08611 1.19494 1.14166 1.07320 0.98121 0.91734 1.25718 1.02852 0.95042 1.00959 1.70212 1.34002 1.08607 1.45329 0.85427 0.79574 0.76914 0.79602 1.22593 1.21733 1.18657 1.20587 0.95854 0.91797 0.84798 1.22224 1.01168 0.96051 0.97575 0.74486 0.87091 0.87205 0.93679 0.93513 0.85147 0.85324 0.74531 0.90124 0.90083 0.89158 0.94656 0.93293 0.94393 0.94501 0.98700 0.95642 0.93462 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.49 19.25 74.32 1.43 -3.06 16 2 C -0.22 -4.62 13.34 31.13 0.42 -4.20 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.06 16 4 C -0.10 -2.15 4.46 30.60 0.14 -2.01 16 5 C -0.12 -2.05 5.70 29.85 0.17 -1.88 16 6 C 0.49 14.70 7.66 87.66 0.67 15.38 16 7 O -0.60 -26.51 15.64 -3.03 -0.05 -26.55 16 8 N -0.71 -18.25 4.93 -446.52 -2.20 -20.45 16 9 C 0.16 5.57 2.07 44.16 0.09 5.66 16 10 H 0.04 2.10 6.91 -2.39 -0.02 2.08 16 11 C -0.10 -2.73 4.69 28.62 0.13 -2.60 16 12 C -0.13 -4.23 5.74 29.40 0.17 -4.06 16 13 C 0.15 5.92 5.65 87.38 0.49 6.42 16 14 N -0.60 -31.16 2.27 -698.29 -1.59 -32.74 16 15 C -0.26 -15.08 9.44 84.04 0.79 -14.29 16 16 H 0.06 3.65 7.88 -2.91 -0.02 3.63 16 17 C -0.05 -3.04 4.87 84.86 0.41 -2.62 16 18 N -0.93 -59.23 11.01 21.65 0.24 -59.00 16 19 Si 0.96 48.82 29.58 68.60 2.03 50.85 16 20 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 21 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 22 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 23 C 0.20 10.18 4.67 86.50 0.40 10.58 16 24 C -0.13 -5.09 5.39 30.23 0.16 -4.92 16 25 H 0.24 3.06 7.80 -4.42 -0.03 3.02 16 26 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 1.23 8.10 -2.39 -0.02 1.21 16 29 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 30 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.42 6.39 8.60 -92.70 -0.80 5.59 16 33 H 0.08 1.81 7.36 -2.39 -0.02 1.79 16 34 H 0.08 1.70 8.04 -2.38 -0.02 1.68 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 38 H 0.04 1.56 7.99 -2.39 -0.02 1.54 16 39 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 40 H -0.01 -0.28 8.03 -2.39 -0.02 -0.30 16 41 H 0.02 1.56 6.33 -2.39 -0.02 1.55 16 42 H 0.05 1.89 7.86 -2.39 -0.02 1.87 16 43 H 0.07 2.48 7.32 -2.39 -0.02 2.47 16 Total: -1.00 -82.57 348.93 4.26 -78.30 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.18 Total: 11.14 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 5.65 Total: -1.55 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -3.55 Total: -112.19 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.85 kcal Total: -82.57 4.26 -78.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755024410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.142 kcal (2) G-P(sol) polarization free energy of solvation -82.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds