Wall clock time and date at job start Tue Mar 31 2020 00:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 29.36153 * 3 2 1 5 5 C 1.53000 * 109.46973 * 273.54516 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47291 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00369 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.64766 * 179.71710 * 9 7 6 11 11 C 1.54340 * 107.26470 * 178.84876 * 10 9 7 12 12 H 1.08996 * 110.51421 * 96.44704 * 11 10 9 13 13 C 1.52994 * 111.00143 * 219.59998 * 11 10 9 14 14 C 1.55160 * 103.01957 * 338.13985 * 11 10 9 15 15 H 1.09002 * 111.03395 * 153.39175 * 14 11 10 16 16 N 1.46497 * 111.00474 * 277.23135 * 14 11 10 17 17 C 1.36932 * 120.00079 * 198.64947 * 16 14 11 18 18 H 1.07998 * 120.00415 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99908 * 179.97438 * 17 16 14 20 20 N 1.31614 * 119.99731 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46976 * 359.97438 * 21 19 17 23 23 H 1.48488 * 109.47067 * 120.00226 * 21 19 17 24 24 H 1.48501 * 109.47109 * 240.00593 * 21 19 17 25 25 C 1.47427 * 125.64775 * 0.02562 * 9 7 6 26 26 H 1.08992 * 109.47494 * 357.09583 * 1 2 3 27 27 H 1.09001 * 109.46765 * 117.09551 * 1 2 3 28 28 H 1.08996 * 109.46684 * 237.09365 * 1 2 3 29 29 H 1.09002 * 109.47120 * 153.54271 * 4 3 2 30 30 H 1.09001 * 109.46952 * 33.54408 * 4 3 2 31 31 H 1.09001 * 109.47194 * 299.99745 * 5 4 3 32 32 H 1.08992 * 109.47399 * 59.99917 * 5 4 3 33 33 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 34 34 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 35 35 H 1.08997 * 109.88358 * 298.38827 * 10 9 7 36 36 H 1.09000 * 109.88628 * 59.56263 * 10 9 7 37 37 H 1.09000 * 109.47058 * 173.78190 * 13 11 10 38 38 H 1.08994 * 109.47494 * 293.77974 * 13 11 10 39 39 H 1.08995 * 109.47160 * 53.78202 * 13 11 10 40 40 H 0.97005 * 119.99699 * 18.65475 * 16 14 11 41 41 H 0.97008 * 119.99849 * 179.97438 * 20 19 17 42 42 H 1.08996 * 110.36495 * 322.93301 * 25 9 7 43 43 H 1.08999 * 110.36493 * 85.25355 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 -0.0003 5 6 4.6283 -0.0886 1.4393 6 6 6.1583 -0.0878 1.4390 7 6 6.6610 -0.1750 2.8570 8 8 5.8731 -0.2317 3.7773 9 7 7.9862 -0.1901 3.1025 10 6 8.6105 -0.2659 4.4314 11 6 10.1391 -0.2848 4.2189 12 1 10.5524 0.7178 4.3284 13 6 10.8155 -1.2560 5.1885 14 6 10.2825 -0.7808 2.7557 15 1 11.2087 -0.4192 2.3090 16 7 10.2049 -2.2421 2.6867 17 6 10.6787 -2.9015 1.5841 18 1 11.1092 -2.3444 0.7651 19 6 10.6056 -4.2863 1.5189 20 7 10.0805 -4.9652 2.5166 21 14 11.2525 -5.1859 0.0150 22 1 11.7885 -4.2009 -0.9586 23 1 12.3340 -6.1181 0.4231 24 1 10.1488 -5.9538 -0.6153 25 6 9.0496 -0.1268 2.0834 26 1 -0.3634 1.0262 0.0521 27 1 -0.3633 -0.4681 -0.9149 28 1 -0.3632 -0.5583 0.8628 29 1 4.4812 0.9207 -0.4583 30 1 4.4813 -0.8559 -0.5683 31 1 4.2651 0.7680 2.0073 32 1 4.2652 -1.0085 1.8972 33 1 6.5220 -0.9441 0.8710 34 1 6.5212 0.8324 0.9812 35 1 8.3276 0.6040 5.0241 36 1 8.2971 -1.1794 4.9368 37 1 11.8752 -1.3332 4.9452 38 1 10.7028 -0.8886 6.2084 39 1 10.3505 -2.2380 5.1025 40 1 9.8178 -2.7425 3.4220 41 1 10.0290 -5.9328 2.4709 42 1 8.7586 -0.6890 1.1961 43 1 9.2645 0.9096 1.8233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755115191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:40 Heat of formation + Delta-G solvation = 5.745655 kcal Electronic energy + Delta-G solvation = -21412.836065 eV Core-core repulsion = 18265.874057 eV Total energy + Delta-G solvation = -3146.962008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.76224 -37.69816 -35.62660 -33.86029 -33.29776 -32.35951 -30.52840 -29.65482 -27.75250 -27.03836 -25.48099 -23.89481 -22.42125 -21.48045 -19.24073 -18.82309 -17.52960 -16.84314 -16.23778 -16.07423 -15.49391 -14.85961 -14.50473 -14.20213 -13.94720 -13.83207 -13.64549 -13.47204 -13.06343 -12.98537 -12.77845 -12.49277 -12.13633 -12.01360 -11.87650 -11.55103 -11.42038 -11.12517 -10.95569 -10.83017 -10.74722 -10.47110 -10.26831 -9.93828 -9.81800 -9.72725 -9.68450 -9.45452 -9.05221 -8.18328 -7.04868 -5.85106 -3.15012 2.64874 2.68819 3.03616 3.37704 3.43179 3.43663 3.46118 4.18959 4.50816 4.74605 5.04077 5.05344 5.11242 5.16674 5.31196 5.35617 5.36550 5.48881 5.51689 5.54242 5.57870 5.61715 5.63930 5.74616 5.77873 5.89686 5.92384 6.00820 6.17343 6.19353 6.21922 6.33925 6.34858 6.37293 6.50636 6.63742 6.79002 6.91459 7.62130 7.62440 7.98138 8.32590 8.57172 9.44541 10.00455 10.35000 11.36954 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.004187 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.424048 B = 6685.004158 C = 8173.916152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.206 4.206 3 C -0.177 4.177 4 C -0.009 4.009 5 C -0.097 4.097 6 C -0.135 4.135 7 C 0.528 3.472 8 O -0.558 6.558 9 N -0.603 5.603 10 C 0.116 3.884 11 C -0.113 4.113 12 H 0.078 0.922 13 C -0.132 4.132 14 C 0.171 3.829 15 H 0.070 0.930 16 N -0.710 5.710 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.068 3.932 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.387 0.613 41 H 0.256 0.744 42 H 0.081 0.919 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.142 12.475 -2.643 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.206 4.206 3 C -0.177 4.177 4 C -0.045 4.045 5 C -0.135 4.135 6 C -0.175 4.175 7 C 0.317 3.683 8 O -0.437 6.437 9 N -0.336 5.336 10 C -0.006 4.006 11 C -0.133 4.133 12 H 0.097 0.903 13 C -0.190 4.190 14 C 0.058 3.942 15 H 0.088 0.912 16 N -0.351 5.351 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.205 4.205 20 N -0.575 5.575 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.058 4.058 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.223 0.777 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.550 12.352 -2.326 15.202 hybrid contribution 0.227 -0.773 -0.681 1.055 sum -8.323 11.579 -3.007 14.574 Atomic orbital electron populations 1.18808 0.84847 1.02765 1.02869 1.22380 0.93956 1.02427 1.01861 1.22404 0.93694 1.00696 1.00897 1.18744 0.84298 1.03300 0.98192 1.21261 0.93301 1.04068 0.94836 1.21619 0.96689 1.04562 0.94654 1.20231 0.80667 0.76067 0.91357 1.90661 1.54748 1.51465 1.46812 1.48356 1.05009 1.71672 1.08565 1.21924 0.92552 1.01215 0.84944 1.22486 0.93620 0.99681 0.97506 0.90334 1.21596 1.00996 0.99646 0.96725 1.21361 0.94480 0.86578 0.91737 0.91196 1.42397 1.72356 0.98844 1.21494 1.19253 1.32823 0.89432 0.96188 0.90965 1.24759 1.01397 0.96448 0.97943 1.69673 1.49927 1.06518 1.31389 0.86143 0.78100 0.79814 0.82232 1.20488 1.21851 1.21887 1.23404 0.90223 0.99368 0.92804 0.90467 0.90443 0.90301 0.89611 0.89320 0.91092 0.90793 0.88294 0.89131 0.92493 0.91590 0.92122 0.93701 0.91272 0.77722 0.93429 0.90096 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.30 10.32 34.37 0.35 0.05 16 2 C -0.21 -2.56 14.13 -37.12 -0.52 -3.08 16 3 C -0.18 -2.32 13.34 -37.12 -0.50 -2.82 16 4 C -0.01 -0.10 5.70 -29.52 -0.17 -0.27 16 5 C -0.10 -1.29 4.46 -26.73 -0.12 -1.41 16 6 C -0.14 -1.84 4.71 -27.88 -0.13 -1.98 16 7 C 0.53 9.38 7.85 -10.99 -0.09 9.29 16 8 O -0.56 -11.69 16.31 5.55 0.09 -11.60 16 9 N -0.60 -10.39 3.33 -170.51 -0.57 -10.96 16 10 C 0.12 1.94 6.47 -3.06 -0.02 1.92 16 11 C -0.11 -1.73 3.40 -88.78 -0.30 -2.03 16 12 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 13 C -0.13 -2.07 8.73 37.15 0.32 -1.75 16 14 C 0.17 3.04 3.44 -65.78 -0.23 2.82 16 15 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 16 N -0.71 -16.34 4.74 -51.35 -0.24 -16.58 16 17 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 18 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -27.10 13.06 55.49 0.72 -26.38 16 21 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.07 1.09 6.38 -2.53 -0.02 1.08 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.10 1.35 7.85 -51.93 -0.41 0.95 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.23 7.78 -51.93 -0.40 0.83 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.29 6.37 -51.93 -0.33 0.96 16 40 H 0.39 9.78 6.09 -40.82 -0.25 9.53 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.08 1.39 7.48 -51.93 -0.39 1.00 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -31.86 358.33 -8.51 -40.37 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -7.24 Total: 8.27 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.66 Total: -4.98 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.09 Total: -53.93 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.86 -8.51 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755115191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.119 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds