Wall clock time and date at job start Tue Mar 31 2020 00:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 29.36153 * 3 2 1 5 5 C 1.53000 * 109.46973 * 273.54516 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47291 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00369 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.64766 * 179.71710 * 9 7 6 11 11 C 1.54340 * 107.26470 * 178.84876 * 10 9 7 12 12 H 1.08996 * 110.51421 * 96.44704 * 11 10 9 13 13 C 1.52994 * 111.00143 * 219.59998 * 11 10 9 14 14 C 1.55160 * 103.01957 * 338.13985 * 11 10 9 15 15 H 1.09002 * 111.03395 * 153.39175 * 14 11 10 16 16 N 1.46497 * 111.00474 * 277.23135 * 14 11 10 17 17 C 1.36932 * 120.00079 * 198.64947 * 16 14 11 18 18 H 1.07998 * 120.00415 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99908 * 179.97438 * 17 16 14 20 20 N 1.31614 * 119.99731 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46976 * 359.97438 * 21 19 17 23 23 H 1.48488 * 109.47067 * 120.00226 * 21 19 17 24 24 H 1.48501 * 109.47109 * 240.00593 * 21 19 17 25 25 C 1.47427 * 125.64775 * 0.02562 * 9 7 6 26 26 H 1.08992 * 109.47494 * 357.09583 * 1 2 3 27 27 H 1.09001 * 109.46765 * 117.09551 * 1 2 3 28 28 H 1.08996 * 109.46684 * 237.09365 * 1 2 3 29 29 H 1.09002 * 109.47120 * 153.54271 * 4 3 2 30 30 H 1.09001 * 109.46952 * 33.54408 * 4 3 2 31 31 H 1.09001 * 109.47194 * 299.99745 * 5 4 3 32 32 H 1.08992 * 109.47399 * 59.99917 * 5 4 3 33 33 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 34 34 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 35 35 H 1.08997 * 109.88358 * 298.38827 * 10 9 7 36 36 H 1.09000 * 109.88628 * 59.56263 * 10 9 7 37 37 H 1.09000 * 109.47058 * 173.78190 * 13 11 10 38 38 H 1.08994 * 109.47494 * 293.77974 * 13 11 10 39 39 H 1.08995 * 109.47160 * 53.78202 * 13 11 10 40 40 H 0.97005 * 119.99699 * 18.65475 * 16 14 11 41 41 H 0.97008 * 119.99849 * 179.97438 * 20 19 17 42 42 H 1.08996 * 110.36495 * 322.93301 * 25 9 7 43 43 H 1.08999 * 110.36493 * 85.25355 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 -0.0003 5 6 4.6283 -0.0886 1.4393 6 6 6.1583 -0.0878 1.4390 7 6 6.6610 -0.1750 2.8570 8 8 5.8731 -0.2317 3.7773 9 7 7.9862 -0.1901 3.1025 10 6 8.6105 -0.2659 4.4314 11 6 10.1391 -0.2848 4.2189 12 1 10.5524 0.7178 4.3284 13 6 10.8155 -1.2560 5.1885 14 6 10.2825 -0.7808 2.7557 15 1 11.2087 -0.4192 2.3090 16 7 10.2049 -2.2421 2.6867 17 6 10.6787 -2.9015 1.5841 18 1 11.1092 -2.3444 0.7651 19 6 10.6056 -4.2863 1.5189 20 7 10.0805 -4.9652 2.5166 21 14 11.2525 -5.1859 0.0150 22 1 11.7885 -4.2009 -0.9586 23 1 12.3340 -6.1181 0.4231 24 1 10.1488 -5.9538 -0.6153 25 6 9.0496 -0.1268 2.0834 26 1 -0.3634 1.0262 0.0521 27 1 -0.3633 -0.4681 -0.9149 28 1 -0.3632 -0.5583 0.8628 29 1 4.4812 0.9207 -0.4583 30 1 4.4813 -0.8559 -0.5683 31 1 4.2651 0.7680 2.0073 32 1 4.2652 -1.0085 1.8972 33 1 6.5220 -0.9441 0.8710 34 1 6.5212 0.8324 0.9812 35 1 8.3276 0.6040 5.0241 36 1 8.2971 -1.1794 4.9368 37 1 11.8752 -1.3332 4.9452 38 1 10.7028 -0.8886 6.2084 39 1 10.3505 -2.2380 5.1025 40 1 9.8178 -2.7425 3.4220 41 1 10.0290 -5.9328 2.4709 42 1 8.7586 -0.6890 1.1961 43 1 9.2645 0.9096 1.8233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755115191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:39 Heat of formation + Delta-G solvation = -12.843137 kcal Electronic energy + Delta-G solvation = -21413.642136 eV Core-core repulsion = 18265.874057 eV Total energy + Delta-G solvation = -3147.768078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13679 -39.10648 -36.63877 -35.62453 -34.30101 -33.78991 -32.24488 -30.59755 -29.29473 -28.09936 -26.61065 -25.76972 -23.69999 -22.69786 -20.63505 -20.15621 -19.31093 -18.09092 -17.48952 -17.29353 -16.83262 -16.23843 -16.05513 -15.63076 -15.27361 -14.74374 -14.70886 -14.46154 -14.40065 -14.33302 -13.97051 -13.62795 -13.44960 -13.22378 -13.16762 -12.97426 -12.87663 -12.80385 -12.51397 -12.25985 -12.05351 -11.93802 -11.89590 -11.46384 -11.33445 -11.03643 -10.86526 -10.65767 -10.59483 -9.62105 -8.92380 -7.90094 -5.17833 1.50263 1.51142 1.60381 1.65248 1.70083 1.76364 2.15514 2.59276 3.34525 3.41925 3.49840 3.82475 3.90480 3.97872 4.02997 4.08546 4.14032 4.43696 4.45410 4.58751 4.61384 4.65934 4.71022 4.73027 4.80104 4.82217 4.83075 4.85696 4.88593 5.00410 5.02626 5.12574 5.15695 5.23462 5.25293 5.29921 5.45897 5.54719 5.61705 6.31124 6.62945 6.71168 7.19633 7.38337 8.14679 8.36345 9.33684 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.004187 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.424048 B = 6685.004158 C = 8173.916152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.215 4.215 3 C -0.217 4.217 4 C -0.002 4.002 5 C -0.088 4.088 6 C -0.125 4.125 7 C 0.515 3.485 8 O -0.599 6.599 9 N -0.607 5.607 10 C 0.114 3.886 11 C -0.098 4.098 12 H 0.119 0.881 13 C -0.127 4.127 14 C 0.157 3.843 15 H 0.087 0.913 16 N -0.724 5.724 17 C -0.228 4.228 18 H 0.087 0.913 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.967 3.033 22 H -0.259 1.259 23 H -0.301 1.301 24 H -0.302 1.302 25 C 0.077 3.923 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.372 0.628 41 H 0.246 0.754 42 H 0.070 0.930 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.609 15.081 -4.279 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.215 4.215 3 C -0.217 4.217 4 C -0.038 4.038 5 C -0.126 4.126 6 C -0.165 4.165 7 C 0.306 3.694 8 O -0.482 6.482 9 N -0.339 5.339 10 C -0.009 4.009 11 C -0.117 4.117 12 H 0.137 0.863 13 C -0.185 4.185 14 C 0.047 3.953 15 H 0.104 0.896 16 N -0.363 5.363 17 C -0.360 4.360 18 H 0.105 0.895 19 C -0.270 4.270 20 N -0.624 5.624 21 Si 0.797 3.203 22 H -0.183 1.183 23 H -0.228 1.228 24 H -0.230 1.230 25 C -0.048 4.048 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.205 0.795 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.984 15.029 -3.997 17.482 hybrid contribution 0.040 -1.485 -0.104 1.489 sum -7.945 13.545 -4.101 16.229 Atomic orbital electron populations 1.19067 0.82389 1.04234 1.04084 1.23439 0.95445 1.01721 1.00865 1.23016 0.94813 1.01784 1.02112 1.18745 0.83563 1.04881 0.96656 1.21134 0.93273 1.02101 0.96117 1.21630 0.96513 1.06310 0.92008 1.21024 0.80552 0.75208 0.92638 1.90636 1.55743 1.53376 1.48424 1.48521 1.05277 1.71066 1.09052 1.21967 0.93585 1.00334 0.85052 1.22477 0.92485 1.01274 0.95496 0.86310 1.21527 1.00437 0.97985 0.98548 1.21711 0.95893 0.83763 0.93965 0.89572 1.42600 1.72146 1.01217 1.20340 1.19700 1.30081 0.89553 0.96632 0.89548 1.25505 1.03235 0.97693 1.00529 1.69844 1.52891 1.05970 1.33650 0.85157 0.76773 0.78666 0.79678 1.18258 1.22847 1.23005 1.23358 0.88423 1.01443 0.91610 0.88741 0.88738 0.89443 0.87091 0.88609 0.91999 0.93785 0.88189 0.85507 0.90963 0.94795 0.92191 0.91246 0.95093 0.79510 0.94481 0.91137 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.62 10.32 70.18 0.72 0.11 16 2 C -0.21 -5.17 14.13 31.13 0.44 -4.73 16 3 C -0.22 -5.61 13.34 31.13 0.42 -5.19 16 4 C 0.00 -0.05 5.70 28.79 0.16 0.12 16 5 C -0.09 -2.33 4.46 30.59 0.14 -2.19 16 6 C -0.13 -3.22 4.71 29.85 0.14 -3.08 16 7 C 0.51 18.04 7.85 87.66 0.69 18.73 16 8 O -0.60 -25.67 16.31 -3.05 -0.05 -25.72 16 9 N -0.61 -20.03 3.33 -811.76 -2.70 -22.73 16 10 C 0.11 3.67 6.47 86.73 0.56 4.23 16 11 C -0.10 -2.75 3.40 -9.60 -0.03 -2.78 16 12 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 13 C -0.13 -3.88 8.73 71.98 0.63 -3.25 16 14 C 0.16 5.20 3.44 46.39 0.16 5.36 16 15 H 0.09 2.63 8.13 -2.39 -0.02 2.61 16 16 N -0.72 -33.03 4.74 -316.37 -1.50 -34.53 16 17 C -0.23 -11.53 9.98 84.04 0.84 -10.69 16 18 H 0.09 4.06 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 20 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 21 Si 0.97 44.49 29.55 68.60 2.03 46.52 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 C 0.08 2.21 6.38 86.86 0.55 2.77 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.04 1.40 8.10 -2.39 -0.02 1.38 16 33 H 0.10 2.60 7.85 -2.39 -0.02 2.58 16 34 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.03 1.30 7.78 -2.39 -0.02 1.28 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.03 1.17 6.37 -2.39 -0.02 1.16 16 40 H 0.37 19.30 6.09 -92.70 -0.56 18.73 16 41 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 42 H 0.07 2.22 7.48 -2.39 -0.02 2.20 16 43 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -71.88 358.33 4.37 -67.51 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.42 Total: 31.75 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.89 Total: -4.41 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -3.92 Total: -115.65 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -71.88 4.37 -67.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755115191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.670 kcal (2) G-P(sol) polarization free energy of solvation -71.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds