Wall clock time and date at job start Tue Mar 31 2020 00:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47021 * 229.74200 * 4 3 2 6 6 C 1.52996 * 109.47346 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47235 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.47419 * 125.65182 * 179.71833 * 9 7 6 11 11 C 1.55123 * 104.72503 * 155.81116 * 10 9 7 12 12 H 1.09000 * 111.23003 * 279.17832 * 11 10 9 13 13 C 1.53008 * 110.90682 * 155.27433 * 11 10 9 14 14 C 1.55157 * 101.48732 * 37.29859 * 11 10 9 15 15 H 1.08993 * 110.72362 * 205.96967 * 14 11 10 16 16 N 1.46500 * 110.87242 * 82.76262 * 14 11 10 17 17 C 1.36941 * 119.99521 * 159.94210 * 16 14 11 18 18 H 1.07995 * 120.00594 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99620 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99857 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47179 * 59.99942 * 21 19 17 23 23 H 1.48504 * 109.47192 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47035 * 299.99883 * 21 19 17 25 25 C 1.47026 * 125.64743 * 0.02562 * 9 7 6 26 26 H 1.09001 * 109.47046 * 130.25833 * 1 2 3 27 27 H 1.08996 * 109.47366 * 250.26237 * 1 2 3 28 28 H 1.09000 * 109.47090 * 10.26048 * 1 2 3 29 29 H 1.08996 * 109.47170 * 349.73467 * 4 3 2 30 30 H 1.08992 * 109.47449 * 109.74243 * 4 3 2 31 31 H 1.09004 * 109.46733 * 300.00271 * 5 4 3 32 32 H 1.08996 * 109.47407 * 59.99588 * 5 4 3 33 33 H 1.09000 * 109.46870 * 299.99817 * 6 5 4 34 34 H 1.09004 * 109.47108 * 59.99711 * 6 5 4 35 35 H 1.08998 * 110.36610 * 274.74811 * 10 9 7 36 36 H 1.09005 * 110.36503 * 37.06293 * 10 9 7 37 37 H 1.09005 * 109.46861 * 307.98382 * 13 11 10 38 38 H 1.08997 * 109.46981 * 67.97723 * 13 11 10 39 39 H 1.08999 * 109.46935 * 187.97908 * 13 11 10 40 40 H 0.97000 * 120.00231 * 339.93678 * 16 14 11 41 41 H 0.97007 * 119.99828 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.88468 * 300.44536 * 25 9 7 43 43 H 1.09001 * 109.88091 * 61.45313 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6272 0.9345 1.1009 6 6 6.1572 0.9364 1.1005 7 6 6.6586 1.8555 2.1844 8 8 5.8699 2.4508 2.8876 9 7 7.9835 2.0168 2.3716 10 6 8.6086 2.8849 3.3859 11 6 10.0156 2.2734 3.6154 12 1 9.9696 1.4201 4.2921 13 6 10.9921 3.3302 4.1358 14 6 10.3953 1.8246 2.1795 15 1 11.1067 0.9994 2.2088 16 7 10.9369 2.9462 1.4081 17 6 11.6995 2.7073 0.2960 18 1 11.9020 1.6923 -0.0121 19 6 12.2122 3.7701 -0.4352 20 7 11.9649 5.0072 -0.0599 21 14 13.2530 3.4444 -1.9517 22 1 12.4567 2.6777 -2.9433 23 1 13.6761 4.7367 -2.5487 24 1 14.4543 2.6599 -1.5685 25 6 9.0449 1.3608 1.5939 26 1 -0.3633 -0.6641 -0.7843 27 1 -0.3634 -0.3470 0.9672 28 1 -0.3633 1.0112 -0.1831 29 1 4.4823 -1.0090 0.1831 30 1 4.4811 0.3493 -0.9672 31 1 4.2629 1.9454 0.9178 32 1 4.2641 0.5871 2.0681 33 1 6.5217 -0.0744 1.2833 34 1 6.5198 1.2841 0.1332 35 1 8.6922 3.9055 3.0123 36 1 8.0313 2.8647 4.3103 37 1 10.9688 4.2006 3.4800 38 1 10.7028 3.6271 5.1439 39 1 12.0000 2.9158 4.1542 40 1 10.7553 3.8579 1.6850 41 1 12.3235 5.7498 -0.5707 42 1 8.9546 0.2782 1.6828 43 1 8.9721 1.6539 0.5466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755115192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:43 Heat of formation + Delta-G solvation = 5.869796 kcal Electronic energy + Delta-G solvation = -21192.956100 eV Core-core repulsion = 18045.999476 eV Total energy + Delta-G solvation = -3146.956625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.81508 -37.74801 -35.70504 -33.93277 -33.36790 -32.36541 -30.52906 -29.72419 -27.72839 -27.09088 -25.51644 -23.87501 -22.48758 -21.56649 -19.29510 -18.80177 -17.60239 -16.90717 -16.28941 -16.10118 -15.49490 -14.82284 -14.59012 -14.30052 -14.01068 -13.83618 -13.69454 -13.59173 -13.12182 -12.98598 -12.79630 -12.55397 -12.22290 -11.99065 -11.88208 -11.59193 -11.50683 -11.13326 -10.93506 -10.92197 -10.77317 -10.47330 -10.30993 -9.95339 -9.88147 -9.79487 -9.69284 -9.53337 -9.02507 -8.22276 -7.09134 -5.86142 -3.16360 2.58091 2.62270 2.94037 3.36673 3.38008 3.42991 3.44241 4.12152 4.50492 4.68287 4.95529 4.98882 5.05081 5.17938 5.28227 5.30152 5.34354 5.42351 5.45485 5.47818 5.51865 5.55303 5.63886 5.64691 5.78021 5.82990 5.93827 5.96218 6.08894 6.18795 6.24504 6.25970 6.34420 6.35965 6.52299 6.65261 6.74857 6.91591 7.55767 7.60720 7.92473 8.31752 8.48067 9.43544 9.98601 10.33308 11.35881 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.003491 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.988217 B = 8018.163613 C = 9180.208512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.204 4.204 3 C -0.179 4.179 4 C -0.009 4.009 5 C -0.097 4.097 6 C -0.136 4.136 7 C 0.524 3.476 8 O -0.558 6.558 9 N -0.608 5.608 10 C 0.114 3.886 11 C -0.114 4.114 12 H 0.078 0.922 13 C -0.131 4.131 14 C 0.172 3.828 15 H 0.070 0.930 16 N -0.712 5.712 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.071 3.929 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.054 0.946 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.075 -10.459 3.348 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.204 4.204 3 C -0.179 4.179 4 C -0.045 4.045 5 C -0.135 4.135 6 C -0.176 4.176 7 C 0.313 3.687 8 O -0.437 6.437 9 N -0.341 5.341 10 C -0.008 4.008 11 C -0.134 4.134 12 H 0.097 0.903 13 C -0.189 4.189 14 C 0.059 3.941 15 H 0.087 0.913 16 N -0.353 5.353 17 C -0.378 4.378 18 H 0.090 0.910 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.055 4.055 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.223 0.777 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.441 -10.183 3.544 17.231 hybrid contribution 0.564 0.142 -0.956 1.119 sum -12.877 -10.041 2.588 16.533 Atomic orbital electron populations 1.18817 0.84823 1.02904 1.02805 1.22390 0.93964 1.02073 1.02006 1.22387 0.93688 1.00895 1.00904 1.18737 0.84331 1.01043 1.00394 1.21267 0.93244 1.00360 0.98630 1.21626 0.96741 1.00204 0.98999 1.20264 0.80765 0.82632 0.84991 1.90665 1.54650 1.49706 1.48672 1.48489 1.04974 1.45326 1.35282 1.22290 0.92799 0.94370 0.91365 1.22647 0.94074 0.98861 0.97783 0.90337 1.21548 0.98597 0.99146 0.99610 1.21200 0.91336 0.92430 0.89105 0.91264 1.42447 1.59831 1.03352 1.29713 1.19175 1.23926 0.92632 1.02101 0.91044 1.24757 1.01062 0.95202 0.99493 1.69649 1.49361 0.97444 1.41214 0.86271 0.80251 0.76727 0.82903 1.21220 1.21719 1.21199 1.23282 0.89497 0.95599 0.97135 0.90431 0.90367 0.90320 0.89557 0.89405 0.90852 0.90980 0.88949 0.88575 0.91311 0.91406 0.91222 0.93676 0.92109 0.77738 0.93306 0.92735 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.28 10.32 34.37 0.35 0.08 16 2 C -0.20 -2.37 14.13 -37.12 -0.52 -2.89 16 3 C -0.18 -2.18 13.34 -37.12 -0.50 -2.68 16 4 C -0.01 -0.09 5.70 -29.51 -0.17 -0.26 16 5 C -0.10 -1.18 4.46 -26.73 -0.12 -1.30 16 6 C -0.14 -1.68 4.89 -27.89 -0.14 -1.82 16 7 C 0.52 8.76 7.85 -10.99 -0.09 8.67 16 8 O -0.56 -11.07 16.24 5.56 0.09 -10.98 16 9 N -0.61 -10.16 3.32 -170.38 -0.57 -10.73 16 10 C 0.11 1.91 6.36 -2.42 -0.02 1.89 16 11 C -0.11 -1.76 3.53 -88.35 -0.31 -2.07 16 12 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.13 -2.05 8.85 37.16 0.33 -1.72 16 14 C 0.17 3.07 3.36 -66.09 -0.22 2.85 16 15 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 16 N -0.71 -16.26 4.62 -51.65 -0.24 -16.50 16 17 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 21 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.07 1.15 6.22 -3.06 -0.02 1.13 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.26 7.99 -51.93 -0.41 0.85 16 36 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 37 H 0.07 1.26 6.39 -51.93 -0.33 0.93 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.39 9.57 6.11 -40.82 -0.25 9.32 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.40 8.05 -51.93 -0.42 0.99 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -31.32 359.20 -8.55 -39.87 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.29 Total: 7.65 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.66 Total: -4.94 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.08 Total: -53.39 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.32 -8.55 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755115192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.741 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds