Wall clock time and date at job start Tue Mar 31 2020 00:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47021 * 229.74200 * 4 3 2 6 6 C 1.52996 * 109.47346 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47235 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.47419 * 125.65182 * 179.71833 * 9 7 6 11 11 C 1.55123 * 104.72503 * 155.81116 * 10 9 7 12 12 H 1.09000 * 111.23003 * 279.17832 * 11 10 9 13 13 C 1.53008 * 110.90682 * 155.27433 * 11 10 9 14 14 C 1.55157 * 101.48732 * 37.29859 * 11 10 9 15 15 H 1.08993 * 110.72362 * 205.96967 * 14 11 10 16 16 N 1.46500 * 110.87242 * 82.76262 * 14 11 10 17 17 C 1.36941 * 119.99521 * 159.94210 * 16 14 11 18 18 H 1.07995 * 120.00594 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99620 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99857 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47179 * 59.99942 * 21 19 17 23 23 H 1.48504 * 109.47192 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47035 * 299.99883 * 21 19 17 25 25 C 1.47026 * 125.64743 * 0.02562 * 9 7 6 26 26 H 1.09001 * 109.47046 * 130.25833 * 1 2 3 27 27 H 1.08996 * 109.47366 * 250.26237 * 1 2 3 28 28 H 1.09000 * 109.47090 * 10.26048 * 1 2 3 29 29 H 1.08996 * 109.47170 * 349.73467 * 4 3 2 30 30 H 1.08992 * 109.47449 * 109.74243 * 4 3 2 31 31 H 1.09004 * 109.46733 * 300.00271 * 5 4 3 32 32 H 1.08996 * 109.47407 * 59.99588 * 5 4 3 33 33 H 1.09000 * 109.46870 * 299.99817 * 6 5 4 34 34 H 1.09004 * 109.47108 * 59.99711 * 6 5 4 35 35 H 1.08998 * 110.36610 * 274.74811 * 10 9 7 36 36 H 1.09005 * 110.36503 * 37.06293 * 10 9 7 37 37 H 1.09005 * 109.46861 * 307.98382 * 13 11 10 38 38 H 1.08997 * 109.46981 * 67.97723 * 13 11 10 39 39 H 1.08999 * 109.46935 * 187.97908 * 13 11 10 40 40 H 0.97000 * 120.00231 * 339.93678 * 16 14 11 41 41 H 0.97007 * 119.99828 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.88468 * 300.44536 * 25 9 7 43 43 H 1.09001 * 109.88091 * 61.45313 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6272 0.9345 1.1009 6 6 6.1572 0.9364 1.1005 7 6 6.6586 1.8555 2.1844 8 8 5.8699 2.4508 2.8876 9 7 7.9835 2.0168 2.3716 10 6 8.6086 2.8849 3.3859 11 6 10.0156 2.2734 3.6154 12 1 9.9696 1.4201 4.2921 13 6 10.9921 3.3302 4.1358 14 6 10.3953 1.8246 2.1795 15 1 11.1067 0.9994 2.2088 16 7 10.9369 2.9462 1.4081 17 6 11.6995 2.7073 0.2960 18 1 11.9020 1.6923 -0.0121 19 6 12.2122 3.7701 -0.4352 20 7 11.9649 5.0072 -0.0599 21 14 13.2530 3.4444 -1.9517 22 1 12.4567 2.6777 -2.9433 23 1 13.6761 4.7367 -2.5487 24 1 14.4543 2.6599 -1.5685 25 6 9.0449 1.3608 1.5939 26 1 -0.3633 -0.6641 -0.7843 27 1 -0.3634 -0.3470 0.9672 28 1 -0.3633 1.0112 -0.1831 29 1 4.4823 -1.0090 0.1831 30 1 4.4811 0.3493 -0.9672 31 1 4.2629 1.9454 0.9178 32 1 4.2641 0.5871 2.0681 33 1 6.5217 -0.0744 1.2833 34 1 6.5198 1.2841 0.1332 35 1 8.6922 3.9055 3.0123 36 1 8.0313 2.8647 4.3103 37 1 10.9688 4.2006 3.4800 38 1 10.7028 3.6271 5.1439 39 1 12.0000 2.9158 4.1542 40 1 10.7553 3.8579 1.6850 41 1 12.3235 5.7498 -0.5707 42 1 8.9546 0.2782 1.6828 43 1 8.9721 1.6539 0.5466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755115192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:42 Heat of formation + Delta-G solvation = -11.936818 kcal Electronic energy + Delta-G solvation = -21193.728253 eV Core-core repulsion = 18045.999476 eV Total energy + Delta-G solvation = -3147.728777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15427 -39.12798 -36.63102 -35.66417 -34.29476 -33.79995 -32.22950 -30.59421 -29.27400 -28.10033 -26.61156 -25.73506 -23.74811 -22.70281 -20.69665 -20.07953 -19.37330 -18.11726 -17.41410 -17.29272 -16.80821 -16.24418 -15.99612 -15.69928 -15.32136 -14.74958 -14.68733 -14.52764 -14.43802 -14.28296 -14.02530 -13.57912 -13.45092 -13.19748 -13.12906 -13.02724 -12.83821 -12.73887 -12.51664 -12.29671 -12.16158 -11.95439 -11.88780 -11.43987 -11.35481 -11.02682 -10.84931 -10.64878 -10.58575 -9.60578 -8.98444 -7.89914 -5.18071 1.51879 1.53378 1.59196 1.63501 1.70505 1.77350 2.11851 2.59883 3.34932 3.42150 3.47507 3.81312 3.92003 3.94847 4.04526 4.08995 4.11937 4.43484 4.45069 4.58368 4.61663 4.66482 4.68823 4.74445 4.75638 4.81085 4.83638 4.86669 4.89630 5.01047 5.02556 5.13505 5.17061 5.23188 5.26357 5.33216 5.37824 5.55250 5.61412 6.31365 6.61373 6.72212 7.16615 7.38842 8.14038 8.36267 9.33343 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.003491 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.988217 B = 8018.163613 C = 9180.208512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.216 4.216 3 C -0.216 4.216 4 C -0.003 4.003 5 C -0.089 4.089 6 C -0.126 4.126 7 C 0.516 3.484 8 O -0.596 6.596 9 N -0.611 5.611 10 C 0.112 3.888 11 C -0.098 4.098 12 H 0.111 0.889 13 C -0.126 4.126 14 C 0.160 3.840 15 H 0.083 0.917 16 N -0.724 5.724 17 C -0.233 4.233 18 H 0.085 0.915 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.968 3.032 22 H -0.277 1.277 23 H -0.305 1.305 24 H -0.277 1.277 25 C 0.081 3.919 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.374 0.626 41 H 0.248 0.752 42 H 0.095 0.905 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.437 -13.314 3.273 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.216 4.216 3 C -0.216 4.216 4 C -0.039 4.039 5 C -0.127 4.127 6 C -0.166 4.166 7 C 0.307 3.693 8 O -0.478 6.478 9 N -0.343 5.343 10 C -0.010 4.010 11 C -0.118 4.118 12 H 0.129 0.871 13 C -0.184 4.184 14 C 0.050 3.950 15 H 0.101 0.899 16 N -0.364 5.364 17 C -0.365 4.365 18 H 0.103 0.897 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.798 3.202 22 H -0.204 1.204 23 H -0.232 1.232 24 H -0.203 1.203 25 C -0.044 4.044 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.207 0.793 41 H 0.056 0.944 42 H 0.113 0.887 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.808 -13.109 3.477 19.355 hybrid contribution 0.595 0.994 -0.840 1.430 sum -13.213 -12.116 2.637 18.120 Atomic orbital electron populations 1.19063 0.82503 1.04056 1.04207 1.23426 0.95443 1.01440 1.01259 1.23032 0.94835 1.01846 1.01936 1.18756 0.83457 1.01669 0.99997 1.21142 0.93201 0.99466 0.98861 1.21658 0.96546 1.00770 0.97593 1.21077 0.80308 0.82620 0.85305 1.90646 1.55474 1.51367 1.50330 1.48616 1.05314 1.45166 1.35184 1.22248 0.93858 0.93349 0.91590 1.22612 0.92713 0.99563 0.96888 0.87099 1.21479 0.98692 0.97958 1.00261 1.21503 0.92215 0.91315 0.89979 0.89872 1.42630 1.59956 1.04181 1.29682 1.19623 1.22061 0.92887 1.01914 0.89719 1.25505 1.03425 0.95197 1.02666 1.69820 1.51586 0.98160 1.42640 0.85284 0.79045 0.75882 0.79962 1.20360 1.23176 1.20345 1.23106 0.88035 0.97677 0.95610 0.88635 0.89071 0.89338 0.87315 0.88278 0.93363 0.92199 0.85671 0.87582 0.94081 0.90866 0.94518 0.91219 0.92294 0.79277 0.94351 0.88675 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.56 10.32 70.18 0.72 0.16 16 2 C -0.22 -4.80 14.13 31.13 0.44 -4.36 16 3 C -0.22 -5.11 13.34 31.13 0.42 -4.70 16 4 C 0.00 -0.05 5.70 28.79 0.16 0.12 16 5 C -0.09 -2.07 4.46 30.59 0.14 -1.94 16 6 C -0.13 -2.85 4.89 29.85 0.15 -2.70 16 7 C 0.52 16.68 7.85 87.66 0.69 17.37 16 8 O -0.60 -23.79 16.24 -3.04 -0.05 -23.83 16 9 N -0.61 -19.50 3.32 -811.35 -2.70 -22.20 16 10 C 0.11 3.68 6.36 86.93 0.55 4.23 16 11 C -0.10 -2.84 3.53 -9.32 -0.03 -2.87 16 12 H 0.11 2.57 8.14 -2.39 -0.02 2.56 16 13 C -0.13 -3.82 8.85 71.98 0.64 -3.19 16 14 C 0.16 5.38 3.36 46.18 0.16 5.54 16 15 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 16 N -0.72 -32.88 4.62 -317.33 -1.47 -34.34 16 17 C -0.23 -11.78 9.98 84.03 0.84 -10.94 16 18 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.08 -4.13 5.50 84.86 0.47 -3.67 16 20 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 21 Si 0.97 44.15 29.55 68.60 2.03 46.18 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 25 C 0.08 2.41 6.22 86.73 0.54 2.95 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 32 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 33 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.04 1.56 7.99 -2.39 -0.02 1.54 16 36 H 0.07 2.31 8.04 -2.38 -0.02 2.29 16 37 H 0.04 1.35 6.39 -2.38 -0.02 1.34 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 40 H 0.37 18.95 6.11 -92.71 -0.57 18.38 16 41 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 42 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.06 1.99 8.05 -2.39 -0.02 1.97 16 Total: -1.00 -69.60 359.20 4.38 -65.21 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.42 Total: 30.47 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.87 Total: -4.00 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -3.88 Total: -114.02 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.83 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -69.60 4.38 -65.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755115192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.275 kcal (2) G-P(sol) polarization free energy of solvation -69.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds