Wall clock time and date at job start Tue Mar 31 2020 00:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47103 * 36.90525 * 4 3 2 6 6 C 1.52999 * 109.46925 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47301 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99700 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00483 * 179.97438 * 7 6 5 10 10 C 1.47743 * 125.81887 * 359.90665 * 9 7 6 11 11 C 1.54909 * 104.83995 * 155.82587 * 10 9 7 12 12 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 13 13 N 1.46498 * 111.00162 * 155.16578 * 11 10 9 14 14 C 1.36942 * 120.00022 * 92.80865 * 13 11 10 15 15 H 1.08006 * 119.99757 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00359 * 179.97438 * 14 13 11 17 17 N 1.31616 * 120.00164 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99855 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47321 * 60.00419 * 18 16 14 20 20 H 1.48503 * 109.47028 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47365 * 300.00161 * 18 16 14 22 22 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 23 23 H 1.08999 * 110.72303 * 82.85766 * 22 11 10 24 24 C 1.53005 * 110.87083 * 206.06082 * 22 11 10 25 25 C 1.47020 * 125.64983 * 179.97438 * 9 7 6 26 26 H 1.08998 * 109.47253 * 323.09894 * 1 2 3 27 27 H 1.09004 * 109.47183 * 83.09517 * 1 2 3 28 28 H 1.09000 * 109.47431 * 203.09725 * 1 2 3 29 29 H 1.08994 * 109.46751 * 276.90246 * 4 3 2 30 30 H 1.08999 * 109.46954 * 156.90507 * 4 3 2 31 31 H 1.08994 * 109.47114 * 59.99892 * 5 4 3 32 32 H 1.09003 * 109.46925 * 299.99402 * 5 4 3 33 33 H 1.09004 * 109.47321 * 59.99983 * 6 5 4 34 34 H 1.08999 * 109.46995 * 299.99897 * 6 5 4 35 35 H 1.09003 * 110.29227 * 37.02448 * 10 9 7 36 36 H 1.08996 * 110.53057 * 274.75660 * 10 9 7 37 37 H 0.96998 * 120.00750 * 272.81024 * 13 11 10 38 38 H 0.96996 * 120.00537 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.46692 * 175.06169 * 24 22 11 40 40 H 1.08997 * 109.47070 * 295.05832 * 24 22 11 41 41 H 1.09002 * 109.47183 * 55.06216 * 24 22 11 42 42 H 1.09002 * 109.88367 * 61.60808 * 25 9 7 43 43 H 1.09000 * 109.88319 * 300.59426 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6290 -1.1511 -0.8662 6 6 6.1590 -1.1501 -0.8656 7 6 6.6624 -2.2861 -1.7183 8 8 5.8749 -3.0243 -2.2716 9 7 7.9877 -2.4820 -1.8661 10 6 9.0560 -1.6641 -1.2556 11 6 10.2870 -2.6023 -1.1928 12 1 10.2283 -3.2667 -0.3308 13 7 11.5334 -1.8326 -1.1759 14 6 12.1105 -1.4901 0.0178 15 1 11.6470 -1.7878 0.9468 16 6 13.2918 -0.7612 0.0339 17 7 13.8570 -0.3989 -1.0982 18 14 14.0785 -0.2935 1.6622 19 1 14.4062 -1.5245 2.4254 20 1 15.3220 0.4775 1.4078 21 1 13.1326 0.5390 2.4480 22 6 10.1416 -3.3961 -2.5180 23 1 10.5558 -2.8314 -3.3532 24 6 10.8121 -4.7671 -2.4085 25 6 8.6128 -3.5465 -2.6646 26 1 -0.3634 0.8218 0.6170 27 1 -0.3634 0.1236 -1.0202 28 1 -0.3634 -0.9453 0.4031 29 1 4.4813 -0.1213 1.0202 30 1 4.4804 0.9475 -0.4031 31 1 4.2656 -1.0279 -1.8863 32 1 4.2666 -2.0968 -0.4630 33 1 6.5221 -1.2736 0.1547 34 1 6.5218 -0.2045 -1.2685 35 1 8.7660 -1.3511 -0.2526 36 1 9.2730 -0.7943 -1.8757 37 1 11.9500 -1.5655 -2.0102 38 1 14.6822 0.1107 -1.0870 39 1 10.6216 -5.3382 -3.3171 40 1 11.8866 -4.6368 -2.2798 41 1 10.4057 -5.3028 -1.5506 42 1 8.3287 -3.4401 -3.7115 43 1 8.2987 -4.5218 -2.2927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755115193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:46 Heat of formation + Delta-G solvation = 1.843306 kcal Electronic energy + Delta-G solvation = -20948.831617 eV Core-core repulsion = 17801.700390 eV Total energy + Delta-G solvation = -3147.131226 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86271 -37.71945 -35.74623 -34.09524 -33.41485 -32.47304 -30.77441 -29.77493 -27.57236 -27.15216 -25.60310 -23.98320 -22.29386 -21.34657 -19.90661 -18.95661 -17.25112 -17.09352 -16.37987 -16.22025 -15.57322 -15.05696 -14.54781 -14.13203 -14.04479 -13.76349 -13.71825 -13.50404 -13.14388 -12.99025 -12.93939 -12.80564 -12.45355 -12.17522 -11.89394 -11.63478 -11.56081 -11.13717 -11.02117 -10.97487 -10.73363 -10.63592 -10.29725 -10.00231 -9.93288 -9.82114 -9.81840 -9.60841 -9.04767 -8.34604 -7.13179 -5.89207 -3.20222 2.55201 2.59576 2.84233 3.23897 3.36881 3.42304 3.42770 4.08843 4.46775 4.63640 4.91334 4.94106 5.00959 5.12208 5.20765 5.26658 5.27090 5.38543 5.42934 5.45030 5.50418 5.53099 5.60251 5.62745 5.74809 5.80294 5.82275 5.92772 6.00117 6.04436 6.18909 6.20518 6.22562 6.35771 6.44586 6.53001 6.60983 6.83686 7.53062 7.58530 7.80336 8.27875 8.38054 9.40124 9.93600 10.28581 11.32541 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.003315 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.491150 B = 8444.319146 C = 9830.150743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.204 4.204 3 C -0.179 4.179 4 C -0.009 4.009 5 C -0.097 4.097 6 C -0.137 4.137 7 C 0.525 3.475 8 O -0.557 6.557 9 N -0.615 5.615 10 C 0.071 3.929 11 C 0.177 3.823 12 H 0.069 0.931 13 N -0.710 5.710 14 C -0.249 4.249 15 H 0.072 0.928 16 C -0.007 4.007 17 N -0.929 5.929 18 Si 0.908 3.092 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.115 4.115 23 H 0.083 0.917 24 C -0.133 4.133 25 C 0.116 3.884 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.387 0.613 38 H 0.258 0.742 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.443 -1.328 0.172 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.204 4.204 3 C -0.179 4.179 4 C -0.046 4.046 5 C -0.135 4.135 6 C -0.177 4.177 7 C 0.314 3.686 8 O -0.436 6.436 9 N -0.348 5.348 10 C -0.055 4.055 11 C 0.064 3.936 12 H 0.087 0.913 13 N -0.349 5.349 14 C -0.380 4.380 15 H 0.090 0.910 16 C -0.204 4.204 17 N -0.576 5.576 18 Si 0.739 3.261 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.135 4.135 23 H 0.101 0.899 24 C -0.191 4.191 25 C -0.007 4.007 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.827 -1.663 0.066 17.905 hybrid contribution 0.694 0.550 0.604 1.072 sum -17.133 -1.112 0.670 17.182 Atomic orbital electron populations 1.18817 0.84819 1.02842 1.02883 1.22393 0.93964 1.01943 1.02103 1.22382 0.93678 1.00944 1.00894 1.18737 0.84333 0.99988 1.01496 1.21266 0.93157 0.98253 1.00794 1.21641 0.96770 0.98166 1.01092 1.20312 0.80659 0.85948 0.81680 1.90670 1.54771 1.48386 1.49743 1.48643 1.05134 1.31600 1.49455 1.23588 0.88360 0.95919 0.97591 1.21363 0.86092 0.91190 0.94913 0.91350 1.42292 1.22443 1.63412 1.06754 1.19195 1.04256 1.28796 0.85782 0.91032 1.24765 0.98013 1.00720 0.96921 1.69643 1.20708 1.42797 1.24480 0.86264 0.78677 0.78160 0.83025 1.21151 1.21654 1.21135 1.22524 0.92717 0.97971 1.00287 0.89856 1.21648 1.01624 0.95046 1.00766 1.21952 0.92669 0.90882 0.95240 0.90408 0.90346 0.90345 0.89425 0.89433 0.90929 0.90914 0.88625 0.88663 0.91156 0.91155 0.77851 0.93255 0.93261 0.91410 0.92901 0.92170 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.27 10.32 34.37 0.35 0.09 16 2 C -0.20 -2.29 14.13 -37.12 -0.52 -2.81 16 3 C -0.18 -2.12 13.34 -37.12 -0.50 -2.61 16 4 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 5 C -0.10 -1.11 4.46 -26.73 -0.12 -1.23 16 6 C -0.14 -1.60 4.72 -27.88 -0.13 -1.73 16 7 C 0.52 8.19 7.85 -10.99 -0.09 8.10 16 8 O -0.56 -10.38 16.31 5.55 0.09 -10.29 16 9 N -0.61 -9.58 3.34 -170.26 -0.57 -10.15 16 10 C 0.07 1.15 6.41 -2.35 -0.02 1.14 16 11 C 0.18 3.20 3.17 -65.78 -0.21 2.99 16 12 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 13 N -0.71 -16.15 5.24 -51.35 -0.27 -16.42 16 14 C -0.25 -6.39 9.96 -15.06 -0.15 -6.54 16 15 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -26.52 13.06 55.49 0.72 -25.80 16 18 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.12 -1.78 3.19 -88.78 -0.28 -2.06 16 23 H 0.08 1.33 8.00 -51.93 -0.42 0.92 16 24 C -0.13 -1.89 9.14 37.16 0.34 -1.55 16 25 C 0.12 1.74 6.45 -3.07 -0.02 1.72 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.10 0.99 7.86 -51.93 -0.41 0.59 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.08 7.50 -51.93 -0.39 0.69 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.39 9.46 7.76 -40.82 -0.32 9.14 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.95 7.82 -51.93 -0.41 0.55 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -30.69 362.00 -8.58 -39.27 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.39 Total: 6.77 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.60 Total: -5.05 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.11 Total: -52.37 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.69 -8.58 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755115193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.114 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds