Wall clock time and date at job start Tue Mar 31 2020 00:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47103 * 36.90525 * 4 3 2 6 6 C 1.52999 * 109.46925 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47301 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99700 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00483 * 179.97438 * 7 6 5 10 10 C 1.47743 * 125.81887 * 359.90665 * 9 7 6 11 11 C 1.54909 * 104.83995 * 155.82587 * 10 9 7 12 12 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 13 13 N 1.46498 * 111.00162 * 155.16578 * 11 10 9 14 14 C 1.36942 * 120.00022 * 92.80865 * 13 11 10 15 15 H 1.08006 * 119.99757 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00359 * 179.97438 * 14 13 11 17 17 N 1.31616 * 120.00164 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99855 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47321 * 60.00419 * 18 16 14 20 20 H 1.48503 * 109.47028 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47365 * 300.00161 * 18 16 14 22 22 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 23 23 H 1.08999 * 110.72303 * 82.85766 * 22 11 10 24 24 C 1.53005 * 110.87083 * 206.06082 * 22 11 10 25 25 C 1.47020 * 125.64983 * 179.97438 * 9 7 6 26 26 H 1.08998 * 109.47253 * 323.09894 * 1 2 3 27 27 H 1.09004 * 109.47183 * 83.09517 * 1 2 3 28 28 H 1.09000 * 109.47431 * 203.09725 * 1 2 3 29 29 H 1.08994 * 109.46751 * 276.90246 * 4 3 2 30 30 H 1.08999 * 109.46954 * 156.90507 * 4 3 2 31 31 H 1.08994 * 109.47114 * 59.99892 * 5 4 3 32 32 H 1.09003 * 109.46925 * 299.99402 * 5 4 3 33 33 H 1.09004 * 109.47321 * 59.99983 * 6 5 4 34 34 H 1.08999 * 109.46995 * 299.99897 * 6 5 4 35 35 H 1.09003 * 110.29227 * 37.02448 * 10 9 7 36 36 H 1.08996 * 110.53057 * 274.75660 * 10 9 7 37 37 H 0.96998 * 120.00750 * 272.81024 * 13 11 10 38 38 H 0.96996 * 120.00537 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.46692 * 175.06169 * 24 22 11 40 40 H 1.08997 * 109.47070 * 295.05832 * 24 22 11 41 41 H 1.09002 * 109.47183 * 55.06216 * 24 22 11 42 42 H 1.09002 * 109.88367 * 61.60808 * 25 9 7 43 43 H 1.09000 * 109.88319 * 300.59426 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6290 -1.1511 -0.8662 6 6 6.1590 -1.1501 -0.8656 7 6 6.6624 -2.2861 -1.7183 8 8 5.8749 -3.0243 -2.2716 9 7 7.9877 -2.4820 -1.8661 10 6 9.0560 -1.6641 -1.2556 11 6 10.2870 -2.6023 -1.1928 12 1 10.2283 -3.2667 -0.3308 13 7 11.5334 -1.8326 -1.1759 14 6 12.1105 -1.4901 0.0178 15 1 11.6470 -1.7878 0.9468 16 6 13.2918 -0.7612 0.0339 17 7 13.8570 -0.3989 -1.0982 18 14 14.0785 -0.2935 1.6622 19 1 14.4062 -1.5245 2.4254 20 1 15.3220 0.4775 1.4078 21 1 13.1326 0.5390 2.4480 22 6 10.1416 -3.3961 -2.5180 23 1 10.5558 -2.8314 -3.3532 24 6 10.8121 -4.7671 -2.4085 25 6 8.6128 -3.5465 -2.6646 26 1 -0.3634 0.8218 0.6170 27 1 -0.3634 0.1236 -1.0202 28 1 -0.3634 -0.9453 0.4031 29 1 4.4813 -0.1213 1.0202 30 1 4.4804 0.9475 -0.4031 31 1 4.2656 -1.0279 -1.8863 32 1 4.2666 -2.0968 -0.4630 33 1 6.5221 -1.2736 0.1547 34 1 6.5218 -0.2045 -1.2685 35 1 8.7660 -1.3511 -0.2526 36 1 9.2730 -0.7943 -1.8757 37 1 11.9500 -1.5655 -2.0102 38 1 14.6822 0.1107 -1.0870 39 1 10.6216 -5.3382 -3.3171 40 1 11.8866 -4.6368 -2.2798 41 1 10.4057 -5.3028 -1.5506 42 1 8.3287 -3.4401 -3.7115 43 1 8.2987 -4.5218 -2.2927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755115193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:45 Heat of formation + Delta-G solvation = -15.181511 kcal Electronic energy + Delta-G solvation = -20949.569868 eV Core-core repulsion = 17801.700390 eV Total energy + Delta-G solvation = -3147.869478 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14395 -39.05701 -36.63467 -35.82784 -34.30340 -33.81059 -32.49299 -30.59802 -29.11532 -28.10366 -26.62830 -25.78409 -23.42328 -22.61969 -21.29251 -20.16001 -19.10913 -18.19824 -17.47679 -17.37564 -16.73818 -16.43768 -15.93015 -15.40012 -15.30702 -14.75275 -14.55782 -14.47398 -14.42938 -14.40764 -14.13654 -13.96155 -13.44883 -13.21190 -13.12460 -12.99189 -12.85991 -12.79336 -12.50832 -12.23183 -12.10946 -11.98783 -11.89506 -11.68649 -11.39947 -11.01452 -10.85757 -10.64923 -10.58224 -9.66882 -9.01306 -7.91609 -5.21136 1.53081 1.54098 1.60057 1.61569 1.70172 1.77681 2.03568 2.59565 3.32621 3.39937 3.44276 3.80965 3.82051 3.97092 4.04217 4.08734 4.19534 4.39595 4.43820 4.48927 4.57369 4.61320 4.65305 4.72204 4.74575 4.80903 4.83864 4.87055 4.89807 4.93256 5.10721 5.13553 5.14643 5.18104 5.22759 5.30263 5.37065 5.46383 5.58109 6.28877 6.54203 6.72537 7.13608 7.37020 8.08388 8.32650 9.30921 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.003315 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.491150 B = 8444.319146 C = 9830.150743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.215 4.215 3 C -0.216 4.216 4 C -0.004 4.004 5 C -0.087 4.087 6 C -0.130 4.130 7 C 0.520 3.480 8 O -0.590 6.590 9 N -0.615 5.615 10 C 0.085 3.915 11 C 0.170 3.830 12 H 0.066 0.934 13 N -0.719 5.719 14 C -0.240 4.240 15 H 0.080 0.920 16 C -0.069 4.069 17 N -0.967 5.967 18 Si 0.968 3.032 19 H -0.280 1.280 20 H -0.301 1.301 21 H -0.276 1.276 22 C -0.105 4.105 23 H 0.077 0.923 24 C -0.129 4.129 25 C 0.117 3.883 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.376 0.624 38 H 0.250 0.750 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.763 -1.254 1.240 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.215 4.215 3 C -0.216 4.216 4 C -0.040 4.040 5 C -0.126 4.126 6 C -0.169 4.169 7 C 0.311 3.689 8 O -0.471 6.471 9 N -0.348 5.348 10 C -0.041 4.041 11 C 0.059 3.941 12 H 0.084 0.916 13 N -0.358 5.358 14 C -0.372 4.372 15 H 0.098 0.902 16 C -0.262 4.262 17 N -0.617 5.617 18 Si 0.797 3.203 19 H -0.206 1.206 20 H -0.228 1.228 21 H -0.202 1.202 22 C -0.125 4.125 23 H 0.096 0.904 24 C -0.186 4.186 25 C -0.006 4.006 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.209 0.791 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.194 -1.612 1.153 19.296 hybrid contribution 0.990 0.447 0.231 1.111 sum -18.204 -1.165 1.385 18.294 Atomic orbital electron populations 1.19062 0.82511 1.04162 1.04101 1.23420 0.95427 1.01222 1.01462 1.23013 0.94797 1.01951 1.01853 1.18760 0.83491 0.99768 1.02022 1.21136 0.93015 0.98305 1.00101 1.21686 0.96672 0.97208 1.01379 1.20993 0.80115 0.86337 0.81417 1.90657 1.55390 1.49863 1.51232 1.48686 1.05231 1.31528 1.49362 1.23269 0.87546 0.94971 0.98275 1.21520 0.84994 0.91329 0.96231 0.91576 1.42383 1.23949 1.63987 1.05479 1.19573 1.03719 1.26908 0.86969 0.90199 1.25485 0.99149 1.01950 0.99612 1.69792 1.21075 1.44468 1.26325 0.85301 0.77415 0.77789 0.79765 1.20647 1.22753 1.20188 1.22424 0.93279 0.98249 0.98543 0.90436 1.21608 1.00156 0.94578 1.02263 1.21950 0.91989 0.91120 0.95539 0.88719 0.89174 0.89158 0.87887 0.87971 0.92596 0.92490 0.86630 0.86866 0.89791 0.91825 0.79114 0.94084 0.91012 0.93290 0.92242 0.91817 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.53 10.32 70.18 0.72 0.19 16 2 C -0.22 -4.62 14.13 31.12 0.44 -4.18 16 3 C -0.22 -4.93 13.34 31.12 0.42 -4.51 16 4 C 0.00 -0.07 5.70 28.79 0.16 0.09 16 5 C -0.09 -1.91 4.46 30.59 0.14 -1.78 16 6 C -0.13 -2.77 4.72 29.85 0.14 -2.63 16 7 C 0.52 15.47 7.85 87.66 0.69 16.16 16 8 O -0.59 -21.60 16.31 -3.06 -0.05 -21.65 16 9 N -0.62 -18.14 3.34 -810.98 -2.71 -20.85 16 10 C 0.08 2.60 6.41 86.79 0.56 3.15 16 11 C 0.17 5.94 3.17 46.38 0.15 6.09 16 12 H 0.07 2.36 8.00 -2.39 -0.02 2.34 16 13 N -0.72 -32.45 5.24 -316.38 -1.66 -34.11 16 14 C -0.24 -12.10 9.96 84.03 0.84 -11.27 16 15 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16 16 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 17 N -0.97 -55.87 13.06 21.65 0.28 -55.59 16 18 Si 0.97 43.45 29.55 68.60 2.03 45.48 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 22 C -0.11 -3.14 3.19 -9.60 -0.03 -3.17 16 23 H 0.08 2.43 8.00 -2.39 -0.02 2.41 16 24 C -0.13 -3.47 9.14 71.98 0.66 -2.81 16 25 C 0.12 3.35 6.45 86.73 0.56 3.91 16 26 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.39 8.10 -2.39 -0.02 1.38 16 32 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 33 H 0.12 2.04 7.86 -2.38 -0.02 2.02 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.35 7.50 -2.39 -0.02 2.33 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.38 18.54 7.76 -92.71 -0.72 17.82 16 38 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.93 7.82 -2.39 -0.02 1.91 16 Total: -1.00 -65.66 362.00 4.06 -61.60 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.26 Total: 29.11 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 5.90 Total: -3.99 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -4.08 Total: -110.55 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -65.66 4.06 -61.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755115193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.419 kcal (2) G-P(sol) polarization free energy of solvation -65.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds