Wall clock time and date at job start Tue Mar 31 2020 00:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 156.19281 * 3 2 1 5 5 C 1.53004 * 109.46879 * 214.77735 * 4 3 2 6 6 C 1.53001 * 109.46987 * 180.02562 * 5 4 3 7 7 C 1.50692 * 109.46922 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00377 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00274 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00385 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46930 * 35.00598 * 10 9 7 12 12 C 1.52997 * 109.47137 * 274.99807 * 10 9 7 13 13 C 1.53008 * 109.47037 * 154.99641 * 10 9 7 14 14 C 1.53497 * 114.20384 * 179.97438 * 13 10 9 15 15 N 1.47070 * 87.98301 * 87.52522 * 14 13 10 16 16 C 1.36932 * 136.05620 * 207.08686 * 15 14 13 17 17 H 1.08006 * 120.00205 * 7.81892 * 16 15 14 18 18 C 1.38809 * 120.00281 * 187.82655 * 16 15 14 19 19 N 1.31616 * 120.00068 * 195.17204 * 18 16 15 20 20 Si 1.86802 * 119.99918 * 15.16359 * 18 16 15 21 21 H 1.48504 * 109.47042 * 270.00682 * 20 18 16 22 22 H 1.48499 * 109.47021 * 30.00157 * 20 18 16 23 23 H 1.48492 * 109.47106 * 150.00508 * 20 18 16 24 24 C 1.47068 * 87.88415 * 27.33811 * 15 14 13 25 25 H 1.08989 * 109.47237 * 169.03029 * 1 2 3 26 26 H 1.09003 * 109.46915 * 289.03103 * 1 2 3 27 27 H 1.09003 * 109.47135 * 49.02439 * 1 2 3 28 28 H 1.09007 * 109.46862 * 94.78255 * 4 3 2 29 29 H 1.08994 * 109.47574 * 334.77639 * 4 3 2 30 30 H 1.08993 * 109.47030 * 60.00043 * 5 4 3 31 31 H 1.09002 * 109.47170 * 300.00083 * 5 4 3 32 32 H 1.08994 * 109.47143 * 59.99907 * 6 5 4 33 33 H 1.09002 * 109.46772 * 299.99763 * 6 5 4 34 34 H 0.97001 * 119.99491 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.46751 * 180.02562 * 12 10 9 36 36 H 1.08995 * 109.47159 * 299.99950 * 12 10 9 37 37 H 1.08996 * 109.46758 * 60.00334 * 12 10 9 38 38 H 1.09008 * 113.41028 * 46.80551 * 13 10 9 39 39 H 1.08996 * 113.46841 * 332.74047 * 14 13 10 40 40 H 1.08998 * 113.51535 * 202.31022 * 14 13 10 41 41 H 0.96995 * 120.00585 * 354.89801 * 19 18 16 42 42 H 1.09005 * 113.46482 * 87.44223 * 24 15 14 43 43 H 1.09000 * 113.46807 * 217.87726 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 -0.0003 5 6 4.6271 1.1871 0.8225 6 6 6.1571 1.1888 0.8217 7 6 6.6585 2.3559 1.6325 8 8 5.8699 3.1121 2.1588 9 7 7.9834 2.5593 1.7729 10 6 8.4709 3.6942 2.5607 11 1 7.7983 3.8692 3.4004 12 6 8.5212 4.9433 1.6785 13 6 9.8738 3.3846 3.0871 14 6 10.4913 4.5080 3.9313 15 7 9.8336 3.9160 5.1060 16 6 9.3710 4.3724 6.3113 17 1 9.3471 5.4329 6.5142 18 6 8.9329 3.4720 7.2726 19 7 8.2203 3.8956 8.2949 20 14 9.3545 1.6589 7.1152 21 1 8.2912 0.9689 6.3415 22 1 10.6535 1.5122 6.4109 23 1 9.4537 1.0546 8.4680 24 6 9.8972 2.6172 4.4191 25 1 -0.3633 -1.0088 -0.1955 26 1 -0.3633 0.3351 0.9715 27 1 -0.3633 0.6739 -0.7759 28 1 4.4811 0.0878 -1.0245 29 1 4.4823 -0.9275 0.4376 30 1 4.2640 1.1012 1.8465 31 1 4.2629 2.1165 0.3846 32 1 6.5198 1.2749 -0.2025 33 1 6.5217 0.2594 1.2593 34 1 8.6142 1.9543 1.3523 35 1 8.8844 5.7875 2.2646 36 1 9.1939 4.7682 0.8389 37 1 7.5218 5.1638 1.3037 38 1 10.5415 2.9782 2.3273 39 1 10.1155 5.4990 3.6767 40 1 11.5796 4.4692 3.9776 41 1 8.0638 4.8450 8.4169 42 1 10.8290 2.0790 4.5937 43 1 9.0153 1.9973 4.5802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755384342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:26 Heat of formation + Delta-G solvation = 49.259085 kcal Electronic energy + Delta-G solvation = -21201.002268 eV Core-core repulsion = 18055.927144 eV Total energy + Delta-G solvation = -3145.075124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.90975 -38.58592 -35.88956 -34.71385 -33.41384 -32.35633 -30.81101 -29.40739 -27.79064 -26.69692 -25.26936 -23.80771 -22.40537 -21.21563 -20.14750 -18.94103 -17.46103 -17.15559 -16.36706 -16.19328 -15.92910 -15.06976 -14.64689 -14.37787 -14.03212 -13.91902 -13.70805 -13.65561 -13.34365 -13.22261 -13.15692 -12.64374 -12.56675 -12.05735 -11.89477 -11.65429 -11.43562 -11.17483 -11.02324 -10.91528 -10.63679 -10.27457 -10.04139 -9.92670 -9.84011 -9.57684 -9.43629 -9.13541 -8.82558 -8.63437 -7.13036 -6.25043 -3.16727 2.54141 2.58320 2.85187 3.35111 3.43725 3.49670 3.64600 4.08174 4.63832 4.70481 4.81009 4.85858 4.88510 4.99377 5.12949 5.23850 5.27210 5.34248 5.39181 5.41619 5.47008 5.47920 5.49961 5.64399 5.74866 5.79945 5.87340 5.97593 6.00448 6.11450 6.19517 6.22980 6.30628 6.38379 6.50160 6.55346 6.73062 6.96938 7.18255 7.52145 7.72261 8.29429 8.46204 9.02931 9.56718 10.42748 11.25096 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.003692 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.468414 B = 7582.641235 C = 8437.671967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.199 4.199 3 C -0.184 4.184 4 C -0.006 4.006 5 C -0.101 4.101 6 C -0.140 4.140 7 C 0.508 3.492 8 O -0.536 6.536 9 N -0.725 5.725 10 C 0.165 3.835 11 H 0.102 0.898 12 C -0.156 4.156 13 C -0.140 4.140 14 C 0.125 3.875 15 N -0.623 5.623 16 C -0.304 4.304 17 H 0.081 0.919 18 C -0.024 4.024 19 N -0.932 5.932 20 Si 1.062 2.938 21 H -0.294 1.294 22 H -0.283 1.283 23 H -0.296 1.296 24 C 0.106 3.894 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.395 0.605 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.261 0.739 42 H 0.045 0.955 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -8.387 -21.411 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.199 4.199 3 C -0.184 4.184 4 C -0.043 4.043 5 C -0.138 4.138 6 C -0.180 4.180 7 C 0.294 3.706 8 O -0.412 6.412 9 N -0.376 5.376 10 C 0.062 3.938 11 H 0.120 0.880 12 C -0.214 4.214 13 C -0.160 4.160 14 C -0.001 4.001 15 N -0.351 5.351 16 C -0.430 4.430 17 H 0.099 0.901 18 C -0.223 4.223 19 N -0.575 5.575 20 Si 0.894 3.106 21 H -0.222 1.222 22 H -0.209 1.209 23 H -0.223 1.223 24 C -0.020 4.020 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.229 0.771 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.177 -9.197 -20.071 22.676 hybrid contribution 0.819 1.174 -0.775 1.628 sum -4.357 -8.023 -20.845 22.757 Atomic orbital electron populations 1.18835 0.84790 1.02775 1.03094 1.22420 0.93992 1.01679 1.01838 1.22343 0.93688 1.01180 1.01157 1.18711 0.84463 0.99748 1.01338 1.21288 0.93063 0.97946 1.01551 1.21673 0.97357 0.97958 1.01044 1.20614 0.82434 0.86410 0.81107 1.90741 1.55161 1.47499 1.47792 1.46127 1.06850 1.30779 1.53809 1.20624 0.94775 0.84587 0.93861 0.87982 1.22098 1.01586 0.98126 0.99601 1.23187 0.95598 1.00693 0.96536 1.22399 0.95304 0.95732 0.86708 1.46250 1.67693 1.04091 1.17076 1.20116 1.39146 0.93787 0.89955 0.90112 1.25741 0.97546 1.05343 0.93679 1.70884 1.37296 1.16626 1.32659 0.83774 0.76115 0.75708 0.74984 1.22214 1.20908 1.22342 1.22717 0.99092 0.91043 0.89174 0.90390 0.90158 0.90351 0.89684 0.89552 0.90580 0.90816 0.88887 0.88702 0.77110 0.91292 0.93047 0.92612 0.90592 0.93262 0.94514 0.92856 0.93763 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.29 10.32 34.37 0.35 0.07 16 2 C -0.20 -2.25 14.13 -37.12 -0.52 -2.78 16 3 C -0.18 -2.13 13.34 -37.12 -0.50 -2.63 16 4 C -0.01 -0.05 5.70 -29.52 -0.17 -0.22 16 5 C -0.10 -1.11 4.46 -26.73 -0.12 -1.22 16 6 C -0.14 -1.34 5.70 -27.89 -0.16 -1.50 16 7 C 0.51 7.42 7.79 -10.99 -0.09 7.34 16 8 O -0.54 -10.56 15.64 5.56 0.09 -10.48 16 9 N -0.72 -9.67 5.08 -53.81 -0.27 -9.94 16 10 C 0.17 2.74 2.43 -67.93 -0.16 2.57 16 11 H 0.10 2.25 7.36 -51.93 -0.38 1.87 16 12 C -0.16 -2.26 9.29 37.16 0.35 -1.91 16 13 C -0.14 -2.29 3.73 -89.97 -0.34 -2.63 16 14 C 0.13 2.41 8.08 -8.50 -0.07 2.34 16 15 N -0.62 -15.40 3.42 -184.59 -0.63 -16.03 16 16 C -0.30 -8.94 11.03 -15.06 -0.17 -9.10 16 17 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 18 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 19 N -0.93 -30.31 13.70 55.49 0.76 -29.55 16 20 Si 1.06 27.36 25.50 -169.99 -4.34 23.02 16 21 H -0.29 -7.38 6.97 56.52 0.39 -6.98 16 22 H -0.28 -6.66 5.66 56.52 0.32 -6.34 16 23 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 24 C 0.11 2.20 5.15 -8.37 -0.04 2.16 16 25 H 0.08 0.45 8.14 -51.94 -0.42 0.03 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 35 H 0.07 1.03 6.49 -51.93 -0.34 0.69 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.05 0.92 6.43 -51.93 -0.33 0.59 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.26 8.39 8.73 -40.82 -0.36 8.03 16 42 H 0.04 0.90 7.02 -51.93 -0.36 0.53 16 43 H 0.05 1.13 6.21 -51.93 -0.32 0.81 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -36.94 354.41 -8.03 -44.97 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.25 Total: 1.02 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -1.73 Total: -8.35 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.14 Total: -55.52 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 27.36 SS G_CDS: -4.34 Total: 23.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.94 -8.03 -44.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755384342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.227 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds