Wall clock time and date at job start Tue Mar 31 2020 00:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 156.19281 * 3 2 1 5 5 C 1.53004 * 109.46879 * 214.77735 * 4 3 2 6 6 C 1.53001 * 109.46987 * 180.02562 * 5 4 3 7 7 C 1.50692 * 109.46922 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00377 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00274 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00385 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46930 * 35.00598 * 10 9 7 12 12 C 1.52997 * 109.47137 * 274.99807 * 10 9 7 13 13 C 1.53008 * 109.47037 * 154.99641 * 10 9 7 14 14 C 1.53497 * 114.20384 * 179.97438 * 13 10 9 15 15 N 1.47070 * 87.98301 * 87.52522 * 14 13 10 16 16 C 1.36932 * 136.05620 * 207.08686 * 15 14 13 17 17 H 1.08006 * 120.00205 * 7.81892 * 16 15 14 18 18 C 1.38809 * 120.00281 * 187.82655 * 16 15 14 19 19 N 1.31616 * 120.00068 * 195.17204 * 18 16 15 20 20 Si 1.86802 * 119.99918 * 15.16359 * 18 16 15 21 21 H 1.48504 * 109.47042 * 270.00682 * 20 18 16 22 22 H 1.48499 * 109.47021 * 30.00157 * 20 18 16 23 23 H 1.48492 * 109.47106 * 150.00508 * 20 18 16 24 24 C 1.47068 * 87.88415 * 27.33811 * 15 14 13 25 25 H 1.08989 * 109.47237 * 169.03029 * 1 2 3 26 26 H 1.09003 * 109.46915 * 289.03103 * 1 2 3 27 27 H 1.09003 * 109.47135 * 49.02439 * 1 2 3 28 28 H 1.09007 * 109.46862 * 94.78255 * 4 3 2 29 29 H 1.08994 * 109.47574 * 334.77639 * 4 3 2 30 30 H 1.08993 * 109.47030 * 60.00043 * 5 4 3 31 31 H 1.09002 * 109.47170 * 300.00083 * 5 4 3 32 32 H 1.08994 * 109.47143 * 59.99907 * 6 5 4 33 33 H 1.09002 * 109.46772 * 299.99763 * 6 5 4 34 34 H 0.97001 * 119.99491 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.46751 * 180.02562 * 12 10 9 36 36 H 1.08995 * 109.47159 * 299.99950 * 12 10 9 37 37 H 1.08996 * 109.46758 * 60.00334 * 12 10 9 38 38 H 1.09008 * 113.41028 * 46.80551 * 13 10 9 39 39 H 1.08996 * 113.46841 * 332.74047 * 14 13 10 40 40 H 1.08998 * 113.51535 * 202.31022 * 14 13 10 41 41 H 0.96995 * 120.00585 * 354.89801 * 19 18 16 42 42 H 1.09005 * 113.46482 * 87.44223 * 24 15 14 43 43 H 1.09000 * 113.46807 * 217.87726 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 -0.0003 5 6 4.6271 1.1871 0.8225 6 6 6.1571 1.1888 0.8217 7 6 6.6585 2.3559 1.6325 8 8 5.8699 3.1121 2.1588 9 7 7.9834 2.5593 1.7729 10 6 8.4709 3.6942 2.5607 11 1 7.7983 3.8692 3.4004 12 6 8.5212 4.9433 1.6785 13 6 9.8738 3.3846 3.0871 14 6 10.4913 4.5080 3.9313 15 7 9.8336 3.9160 5.1060 16 6 9.3710 4.3724 6.3113 17 1 9.3471 5.4329 6.5142 18 6 8.9329 3.4720 7.2726 19 7 8.2203 3.8956 8.2949 20 14 9.3545 1.6589 7.1152 21 1 8.2912 0.9689 6.3415 22 1 10.6535 1.5122 6.4109 23 1 9.4537 1.0546 8.4680 24 6 9.8972 2.6172 4.4191 25 1 -0.3633 -1.0088 -0.1955 26 1 -0.3633 0.3351 0.9715 27 1 -0.3633 0.6739 -0.7759 28 1 4.4811 0.0878 -1.0245 29 1 4.4823 -0.9275 0.4376 30 1 4.2640 1.1012 1.8465 31 1 4.2629 2.1165 0.3846 32 1 6.5198 1.2749 -0.2025 33 1 6.5217 0.2594 1.2593 34 1 8.6142 1.9543 1.3523 35 1 8.8844 5.7875 2.2646 36 1 9.1939 4.7682 0.8389 37 1 7.5218 5.1638 1.3037 38 1 10.5415 2.9782 2.3273 39 1 10.1155 5.4990 3.6767 40 1 11.5796 4.4692 3.9776 41 1 8.0638 4.8450 8.4169 42 1 10.8290 2.0790 4.5937 43 1 9.0153 1.9973 4.5802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755384342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:25 Heat of formation + Delta-G solvation = 22.614337 kcal Electronic energy + Delta-G solvation = -21202.157671 eV Core-core repulsion = 18055.927144 eV Total energy + Delta-G solvation = -3146.230527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21524 -40.04243 -36.74915 -36.06936 -34.52164 -34.20778 -32.06130 -30.28774 -29.59251 -27.54402 -26.80266 -25.31852 -23.70363 -22.61845 -21.31845 -20.51829 -19.42511 -18.22935 -17.60740 -17.19292 -16.85692 -16.84104 -15.97662 -15.67373 -15.45683 -15.26832 -14.81589 -14.73773 -14.56631 -14.36551 -14.21890 -13.73901 -13.53545 -13.30005 -13.11281 -13.03782 -12.78652 -12.60916 -12.45314 -12.40894 -11.88686 -11.85462 -11.68105 -11.38670 -11.07201 -10.86948 -10.81493 -10.62586 -10.57960 -10.03266 -9.21279 -8.63147 -5.45213 1.34325 1.47277 1.62338 1.70256 1.74004 1.77292 2.27250 2.53751 3.08317 3.16546 3.38353 3.47202 3.81622 3.83560 4.08705 4.12159 4.36107 4.40672 4.50322 4.58622 4.63997 4.67330 4.68742 4.71057 4.75126 4.76591 4.79700 4.80698 4.84265 4.86786 4.87579 5.12209 5.16946 5.20794 5.22035 5.28829 5.33009 5.44260 5.66762 5.95807 6.69372 6.70295 6.72469 7.35399 7.41956 8.30174 8.88827 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.003692 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.468414 B = 7582.641235 C = 8437.671967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.222 4.222 3 C -0.216 4.216 4 C 0.000 4.000 5 C -0.097 4.097 6 C -0.126 4.126 7 C 0.498 3.502 8 O -0.600 6.600 9 N -0.709 5.709 10 C 0.167 3.833 11 H 0.035 0.965 12 C -0.147 4.147 13 C -0.105 4.105 14 C 0.120 3.880 15 N -0.661 5.661 16 C -0.286 4.286 17 H 0.044 0.956 18 C -0.093 4.093 19 N -0.974 5.974 20 Si 1.105 2.895 21 H -0.288 1.288 22 H -0.241 1.241 23 H -0.303 1.303 24 C 0.096 3.904 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.137 0.863 33 H 0.124 0.876 34 H 0.420 0.580 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.139 0.861 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.244 0.756 42 H 0.069 0.931 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.893 -11.091 -25.403 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.222 4.222 3 C -0.216 4.216 4 C -0.036 4.036 5 C -0.135 4.135 6 C -0.165 4.165 7 C 0.287 3.713 8 O -0.481 6.481 9 N -0.361 5.361 10 C 0.062 3.938 11 H 0.053 0.947 12 C -0.205 4.205 13 C -0.124 4.124 14 C -0.005 4.005 15 N -0.390 5.390 16 C -0.414 4.414 17 H 0.061 0.939 18 C -0.284 4.284 19 N -0.620 5.620 20 Si 0.930 3.070 21 H -0.216 1.216 22 H -0.165 1.165 23 H -0.231 1.231 24 C -0.028 4.028 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.258 0.742 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.058 0.942 38 H 0.157 0.843 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.733 -11.914 -24.153 27.070 hybrid contribution 0.045 2.156 0.388 2.191 sum -2.689 -9.757 -23.765 25.831 Atomic orbital electron populations 1.19049 0.82787 1.04266 1.03829 1.23438 0.95532 1.01432 1.01785 1.23205 0.95106 1.01733 1.01558 1.18802 0.82971 0.99273 1.02552 1.21188 0.94510 0.98121 0.99712 1.21703 0.95733 0.96444 1.02615 1.21621 0.82212 0.86938 0.80537 1.90728 1.56791 1.50061 1.50489 1.45918 1.07138 1.30200 1.52885 1.20327 0.93732 0.86879 0.92872 0.94677 1.22000 1.01633 0.96630 1.00204 1.23000 0.95835 0.97671 0.95913 1.22703 0.96572 0.96675 0.84534 1.46327 1.69003 1.07330 1.16379 1.19947 1.37470 0.92223 0.91775 0.93856 1.27162 0.97847 1.09781 0.93607 1.71004 1.40569 1.15413 1.35023 0.83300 0.77878 0.70716 0.75085 1.21558 1.16537 1.23140 1.23011 0.99181 0.89727 0.90926 0.88610 0.89739 0.89006 0.86873 0.87635 0.94128 0.92982 0.84503 0.85788 0.74165 0.92333 0.88995 0.94237 0.84326 0.93520 0.91653 0.94720 0.91362 0.94932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.61 10.32 70.18 0.72 0.11 16 2 C -0.22 -4.95 14.13 31.13 0.44 -4.51 16 3 C -0.22 -4.90 13.34 31.12 0.42 -4.48 16 4 C 0.00 0.00 5.70 28.79 0.16 0.17 16 5 C -0.10 -2.06 4.46 30.60 0.14 -1.92 16 6 C -0.13 -1.99 5.70 29.85 0.17 -1.82 16 7 C 0.50 13.86 7.79 87.65 0.68 14.55 16 8 O -0.60 -24.63 15.64 -3.02 -0.05 -24.67 16 9 N -0.71 -16.65 5.08 -442.54 -2.25 -18.90 16 10 C 0.17 5.24 2.43 44.99 0.11 5.35 16 11 H 0.03 1.60 7.36 -2.39 -0.02 1.58 16 12 C -0.15 -3.94 9.29 71.98 0.67 -3.27 16 13 C -0.10 -2.97 3.73 -10.37 -0.04 -3.01 16 14 C 0.12 4.28 8.08 83.18 0.67 4.95 16 15 N -0.66 -32.22 3.42 -737.93 -2.53 -34.74 16 16 C -0.29 -17.43 11.03 84.03 0.93 -16.50 16 17 H 0.04 2.87 8.06 -2.91 -0.02 2.84 16 18 C -0.09 -5.85 5.50 84.86 0.47 -5.39 16 19 N -0.97 -66.68 13.70 21.65 0.30 -66.38 16 20 Si 1.11 55.47 25.50 68.60 1.75 57.22 16 21 H -0.29 -14.01 6.97 99.48 0.69 -13.31 16 22 H -0.24 -10.34 5.66 99.48 0.56 -9.77 16 23 H -0.30 -15.44 7.11 99.48 0.71 -14.74 16 24 C 0.10 3.69 5.15 83.26 0.43 4.12 16 25 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 31 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 32 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.42 5.67 8.60 -92.71 -0.80 4.87 16 35 H 0.06 1.68 6.49 -2.39 -0.02 1.67 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.14 2.40 8.14 -2.38 -0.02 2.38 16 39 H 0.05 1.68 6.43 -2.39 -0.02 1.66 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 41 H 0.24 16.80 8.73 -92.71 -0.81 15.99 16 42 H 0.07 2.36 7.02 -2.38 -0.02 2.35 16 43 H 0.03 1.38 6.21 -2.39 -0.01 1.36 16 Total: -1.00 -90.45 354.41 3.19 -87.26 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.00 Total: 11.89 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 5.97 Total: -11.67 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -4.48 Total: -120.03 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 55.47 SS G_CDS: 1.75 Total: 57.22 kcal Total: -90.45 3.19 -87.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755384342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.870 kcal (2) G-P(sol) polarization free energy of solvation -90.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds