Wall clock time and date at job start Tue Mar 31 2020 00:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47172 * 233.56648 * 3 2 1 5 5 C 1.52998 * 109.47129 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46905 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99854 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99919 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99912 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.43718 * 323.91099 * 9 8 6 11 11 C 1.54259 * 110.48710 * 86.45489 * 9 8 6 12 12 C 1.53872 * 106.60003 * 142.28843 * 11 9 8 13 13 C 1.54272 * 106.59871 * 0.02562 * 12 11 9 14 14 H 1.09000 * 110.48647 * 95.20097 * 13 12 11 15 15 C 1.52997 * 110.48686 * 217.71344 * 13 12 11 16 16 N 1.46506 * 109.47289 * 291.75556 * 15 13 12 17 17 C 1.36930 * 120.00258 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99823 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00439 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99225 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00268 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46935 * 90.00259 * 21 19 17 23 23 H 1.48507 * 109.47218 * 210.00042 * 21 19 17 24 24 H 1.48492 * 109.47204 * 330.00019 * 21 19 17 25 25 C 1.54888 * 104.31094 * 336.45427 * 13 12 11 26 26 H 4.44652 * 5.63261 * 179.97438 * 4 1 2 27 27 H 1.08988 * 109.47335 * 113.56498 * 3 2 1 28 28 H 1.09003 * 109.47261 * 353.56171 * 3 2 1 29 29 H 1.09002 * 109.47194 * 59.99839 * 4 3 2 30 30 H 1.08997 * 109.46567 * 300.00351 * 4 3 2 31 31 H 1.09002 * 109.47086 * 59.99930 * 5 4 3 32 32 H 1.08995 * 109.47122 * 299.99482 * 5 4 3 33 33 H 0.96999 * 120.00280 * 0.02562 * 8 6 5 34 34 H 1.09001 * 110.03646 * 23.00249 * 11 9 8 35 35 H 1.08999 * 110.07748 * 261.59413 * 11 9 8 36 36 H 1.09000 * 110.03497 * 240.71824 * 12 11 9 37 37 H 1.08995 * 110.07787 * 119.30627 * 12 11 9 38 38 H 1.09001 * 109.47289 * 171.75428 * 15 13 12 39 39 H 1.09004 * 109.47261 * 51.75684 * 15 13 12 40 40 H 0.97001 * 119.99251 * 0.02562 * 16 15 13 41 41 H 0.97000 * 119.99950 * 179.97438 * 20 19 17 42 42 H 1.09006 * 110.75691 * 156.18707 * 25 13 12 43 43 H 1.09001 * 110.76106 * 279.56405 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.8576 1.1606 5 6 4.6856 0.8578 1.1610 6 6 5.1875 1.7023 2.3037 7 8 4.3991 2.2497 3.0451 8 7 6.5125 1.8484 2.5024 9 6 7.0005 2.6690 3.6137 10 1 6.3492 3.5297 3.7658 11 6 7.0955 1.8290 4.9040 12 6 8.3593 2.3012 5.6439 13 6 8.9879 3.4122 4.7776 14 1 8.6612 4.3940 5.1203 15 6 10.5145 3.3163 4.8088 16 7 10.9981 3.6589 6.1487 17 6 12.3408 3.6426 6.4170 18 1 13.0434 3.3776 5.6407 19 6 12.7990 3.9677 7.6863 20 7 11.9428 4.2911 8.6321 21 14 14.6306 3.9448 8.0524 22 1 15.2082 5.2837 7.7717 23 1 14.8455 3.6027 9.4815 24 1 15.2941 2.9298 7.1953 25 6 8.4563 3.1316 3.3501 26 1 -1.0501 0.0000 -0.0004 27 1 3.0092 0.4116 -0.9418 28 1 3.0098 -1.0204 0.1152 29 1 2.7925 0.4466 2.1026 30 1 2.7918 1.8786 1.0454 31 1 5.0492 1.2685 0.2190 32 1 5.0490 -0.1633 1.2764 33 1 7.1431 1.4103 1.9097 34 1 7.1816 0.7712 4.6555 35 1 6.2152 1.9959 5.5248 36 1 9.0588 1.4726 5.7544 37 1 8.0931 2.6979 6.6236 38 1 10.9371 4.0098 4.0818 39 1 10.8199 2.2996 4.5613 40 1 10.3670 3.8972 6.8457 41 1 12.2628 4.5179 9.5193 42 1 8.4724 4.0391 2.7466 43 1 9.0316 2.3384 2.8726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755733908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:48 Heat of formation + Delta-G solvation = -3.891359 kcal Electronic energy + Delta-G solvation = -20526.700126 eV Core-core repulsion = 17379.320226 eV Total energy + Delta-G solvation = -3147.379900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09025 -38.11996 -35.92363 -34.80992 -33.43345 -32.57036 -31.06887 -28.75939 -28.75341 -27.15913 -24.39232 -22.85052 -22.16224 -20.64159 -20.51153 -19.21424 -18.54471 -17.12308 -16.98767 -16.38425 -16.08878 -15.54505 -14.73687 -14.63824 -14.46786 -13.94205 -13.50939 -13.34252 -13.23596 -12.98018 -12.81629 -12.79171 -12.02887 -11.91282 -11.76443 -11.51529 -11.33150 -11.06062 -10.84769 -10.72876 -10.56260 -10.46219 -10.42836 -10.34792 -10.10200 -9.95322 -9.89114 -9.64851 -9.08810 -8.84663 -6.88915 -5.74260 -3.02552 2.46595 2.51370 2.52773 3.07460 3.44574 3.49424 3.51329 4.02124 4.43634 4.59520 4.63210 4.68523 4.75671 4.82174 5.07114 5.09857 5.10666 5.23461 5.24137 5.50269 5.56958 5.62737 5.66542 5.71006 5.71912 5.76403 5.86579 5.92402 5.94797 6.13036 6.19001 6.30257 6.35849 6.46118 6.61332 6.64671 6.83332 6.95746 7.30018 7.39849 7.71434 8.12404 8.44884 9.55881 10.15147 10.49801 11.48691 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.069305 B = 0.002219 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.912449 B =12617.464469 C =12790.436231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.142 4.142 6 C 0.510 3.490 7 O -0.541 6.541 8 N -0.724 5.724 9 C 0.139 3.861 10 H 0.091 0.909 11 C -0.132 4.132 12 C -0.112 4.112 13 C -0.095 4.095 14 H 0.076 0.924 15 C 0.161 3.839 16 N -0.732 5.732 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.120 4.120 26 H 0.216 0.784 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.070 0.930 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.179 -9.002 -18.791 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.186 4.186 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.182 4.182 6 C 0.296 3.704 7 O -0.417 6.417 8 N -0.375 5.375 9 C 0.034 3.966 10 H 0.109 0.891 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.114 4.114 14 H 0.095 0.905 15 C 0.034 3.966 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.159 4.159 26 H 0.233 0.767 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.561 -8.627 -18.260 26.762 hybrid contribution 0.979 -0.150 0.251 1.022 sum -16.582 -8.777 -18.009 26.006 Atomic orbital electron populations 1.24933 0.96037 1.01039 1.00866 1.23106 0.94599 1.00423 1.00478 1.18772 0.84895 1.01489 0.99879 1.21279 0.92997 1.01122 0.98383 1.21689 0.97417 1.01052 0.98023 1.20674 0.82393 0.81395 0.85942 1.90720 1.55250 1.48181 1.47590 1.46152 1.06938 1.51984 1.32388 1.21943 0.95418 0.93536 0.85659 0.89097 1.22540 0.98926 0.99447 0.96175 1.22103 0.95493 0.98684 0.98739 1.22095 0.96821 0.99242 0.93291 0.90515 1.20675 0.89812 0.97050 0.89080 1.42352 1.05083 1.82743 1.07423 1.19238 0.83795 1.38707 0.95315 0.91259 1.24741 0.97616 1.02547 0.96184 1.69662 1.32601 1.53141 1.02793 0.86190 0.85197 0.77611 0.77194 1.21762 1.21794 1.20820 1.22755 0.93672 1.01294 0.98152 0.76699 0.89471 0.89458 0.90694 0.90712 0.88669 0.88638 0.76626 0.91922 0.91720 0.91175 0.91516 0.96524 0.96383 0.78226 0.93547 0.91092 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.67 19.25 29.55 0.57 -1.10 16 2 C -0.19 -1.59 13.34 -37.12 -0.50 -2.08 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.10 -0.77 4.46 -26.73 -0.12 -0.88 16 5 C -0.14 -0.89 5.70 -27.88 -0.16 -1.05 16 6 C 0.51 5.37 7.82 -10.99 -0.09 5.29 16 7 O -0.54 -8.14 15.69 5.56 0.09 -8.06 16 8 N -0.72 -6.84 5.11 -52.14 -0.27 -7.10 16 9 C 0.14 1.66 3.15 -66.21 -0.21 1.45 16 10 H 0.09 1.25 7.67 -51.93 -0.40 0.85 16 11 C -0.13 -1.75 6.53 -25.62 -0.17 -1.91 16 12 C -0.11 -1.74 6.14 -25.61 -0.16 -1.90 16 13 C -0.10 -1.50 2.90 -88.96 -0.26 -1.76 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.16 3.20 5.58 -4.04 -0.02 3.17 16 16 N -0.73 -18.59 5.46 -59.90 -0.33 -18.92 16 17 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 21 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.12 -1.44 5.94 -24.67 -0.15 -1.59 16 26 H 0.22 0.99 7.80 -54.09 -0.42 0.57 16 27 H 0.09 0.40 8.14 -51.94 -0.42 -0.03 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.40 2.61 8.54 -40.82 -0.35 2.26 16 34 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.17 7.74 -51.93 -0.40 0.77 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.36 8.01 -51.93 -0.42 -0.05 16 40 H 0.38 10.27 7.57 -40.82 -0.31 9.96 16 41 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -34.10 361.14 -8.35 -42.44 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.32 Total: 6.47 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.67 Total: -10.04 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.13 Total: -53.76 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.10 -8.35 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755733908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.550 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds