Wall clock time and date at job start Tue Mar 31 2020 00:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47172 * 233.56648 * 3 2 1 5 5 C 1.52998 * 109.47129 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46905 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99854 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99919 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99912 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.43718 * 323.91099 * 9 8 6 11 11 C 1.54259 * 110.48710 * 86.45489 * 9 8 6 12 12 C 1.53872 * 106.60003 * 142.28843 * 11 9 8 13 13 C 1.54272 * 106.59871 * 0.02562 * 12 11 9 14 14 H 1.09000 * 110.48647 * 95.20097 * 13 12 11 15 15 C 1.52997 * 110.48686 * 217.71344 * 13 12 11 16 16 N 1.46506 * 109.47289 * 291.75556 * 15 13 12 17 17 C 1.36930 * 120.00258 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99823 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00439 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99225 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00268 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46935 * 90.00259 * 21 19 17 23 23 H 1.48507 * 109.47218 * 210.00042 * 21 19 17 24 24 H 1.48492 * 109.47204 * 330.00019 * 21 19 17 25 25 C 1.54888 * 104.31094 * 336.45427 * 13 12 11 26 26 H 4.44652 * 5.63261 * 179.97438 * 4 1 2 27 27 H 1.08988 * 109.47335 * 113.56498 * 3 2 1 28 28 H 1.09003 * 109.47261 * 353.56171 * 3 2 1 29 29 H 1.09002 * 109.47194 * 59.99839 * 4 3 2 30 30 H 1.08997 * 109.46567 * 300.00351 * 4 3 2 31 31 H 1.09002 * 109.47086 * 59.99930 * 5 4 3 32 32 H 1.08995 * 109.47122 * 299.99482 * 5 4 3 33 33 H 0.96999 * 120.00280 * 0.02562 * 8 6 5 34 34 H 1.09001 * 110.03646 * 23.00249 * 11 9 8 35 35 H 1.08999 * 110.07748 * 261.59413 * 11 9 8 36 36 H 1.09000 * 110.03497 * 240.71824 * 12 11 9 37 37 H 1.08995 * 110.07787 * 119.30627 * 12 11 9 38 38 H 1.09001 * 109.47289 * 171.75428 * 15 13 12 39 39 H 1.09004 * 109.47261 * 51.75684 * 15 13 12 40 40 H 0.97001 * 119.99251 * 0.02562 * 16 15 13 41 41 H 0.97000 * 119.99950 * 179.97438 * 20 19 17 42 42 H 1.09006 * 110.75691 * 156.18707 * 25 13 12 43 43 H 1.09001 * 110.76106 * 279.56405 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.8576 1.1606 5 6 4.6856 0.8578 1.1610 6 6 5.1875 1.7023 2.3037 7 8 4.3991 2.2497 3.0451 8 7 6.5125 1.8484 2.5024 9 6 7.0005 2.6690 3.6137 10 1 6.3492 3.5297 3.7658 11 6 7.0955 1.8290 4.9040 12 6 8.3593 2.3012 5.6439 13 6 8.9879 3.4122 4.7776 14 1 8.6612 4.3940 5.1203 15 6 10.5145 3.3163 4.8088 16 7 10.9981 3.6589 6.1487 17 6 12.3408 3.6426 6.4170 18 1 13.0434 3.3776 5.6407 19 6 12.7990 3.9677 7.6863 20 7 11.9428 4.2911 8.6321 21 14 14.6306 3.9448 8.0524 22 1 15.2082 5.2837 7.7717 23 1 14.8455 3.6027 9.4815 24 1 15.2941 2.9298 7.1953 25 6 8.4563 3.1316 3.3501 26 1 -1.0501 0.0000 -0.0004 27 1 3.0092 0.4116 -0.9418 28 1 3.0098 -1.0204 0.1152 29 1 2.7925 0.4466 2.1026 30 1 2.7918 1.8786 1.0454 31 1 5.0492 1.2685 0.2190 32 1 5.0490 -0.1633 1.2764 33 1 7.1431 1.4103 1.9097 34 1 7.1816 0.7712 4.6555 35 1 6.2152 1.9959 5.5248 36 1 9.0588 1.4726 5.7544 37 1 8.0931 2.6979 6.6236 38 1 10.9371 4.0098 4.0818 39 1 10.8199 2.2996 4.5613 40 1 10.3670 3.8972 6.8457 41 1 12.2628 4.5179 9.5193 42 1 8.4724 4.0391 2.7466 43 1 9.0316 2.3384 2.8726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755733908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:47 Heat of formation + Delta-G solvation = -25.969683 kcal Electronic energy + Delta-G solvation = -20527.657514 eV Core-core repulsion = 17379.320226 eV Total energy + Delta-G solvation = -3148.337288 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99509 -39.26450 -36.63637 -36.28934 -34.76953 -33.28372 -32.80452 -30.15682 -29.61190 -28.15448 -26.11500 -23.94191 -23.53156 -21.64924 -21.36550 -20.47272 -19.15638 -19.03535 -17.82141 -17.36208 -16.82550 -16.70326 -16.48373 -15.57820 -15.33796 -15.14160 -15.04726 -14.56335 -14.54372 -14.25333 -13.70687 -13.41978 -13.33979 -13.22978 -12.85951 -12.76944 -12.53766 -12.40223 -12.15975 -12.06728 -11.90199 -11.77336 -11.71394 -11.49399 -11.32910 -11.15673 -10.95269 -10.90793 -10.79192 -10.00606 -8.97386 -7.93860 -5.22387 1.47693 1.49764 1.58146 1.72541 1.86089 1.93866 2.29586 2.57518 3.39613 3.53815 3.57710 3.64254 3.82022 3.92515 4.12420 4.19036 4.21150 4.38640 4.49878 4.50802 4.57381 4.61817 4.69451 4.72377 4.76985 4.80799 4.84684 4.92772 5.03804 5.16131 5.18389 5.22578 5.23365 5.25429 5.36013 5.39550 5.49645 5.55420 5.64476 6.28519 6.66919 6.73589 7.34495 7.37223 8.12631 8.34799 9.29925 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.069305 B = 0.002219 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.912449 B =12617.464469 C =12790.436231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.216 4.216 3 C -0.010 4.010 4 C -0.096 4.096 5 C -0.130 4.130 6 C 0.504 3.496 7 O -0.594 6.594 8 N -0.710 5.710 9 C 0.146 3.854 10 H 0.072 0.928 11 C -0.123 4.123 12 C -0.108 4.108 13 C -0.091 4.091 14 H 0.063 0.937 15 C 0.160 3.840 16 N -0.747 5.747 17 C -0.245 4.245 18 H 0.078 0.922 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.268 1.268 25 C -0.104 4.104 26 H 0.238 0.762 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.418 0.582 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.373 0.627 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.414 -10.357 -21.547 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.216 4.216 3 C -0.047 4.047 4 C -0.134 4.134 5 C -0.169 4.169 6 C 0.292 3.708 7 O -0.474 6.474 8 N -0.362 5.362 9 C 0.041 3.959 10 H 0.090 0.910 11 C -0.162 4.162 12 C -0.146 4.146 13 C -0.111 4.111 14 H 0.081 0.919 15 C 0.034 3.966 16 N -0.389 5.389 17 C -0.377 4.377 18 H 0.095 0.905 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.192 1.192 25 C -0.142 4.142 26 H 0.254 0.746 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.256 0.744 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.773 -10.014 -21.095 28.750 hybrid contribution 0.680 0.266 1.081 1.304 sum -16.092 -9.748 -20.014 27.469 Atomic orbital electron populations 1.25714 0.97160 1.00762 1.00518 1.23902 0.95953 1.00820 1.00902 1.18869 0.83570 1.02309 0.99906 1.21181 0.94250 0.99972 0.98010 1.21713 0.95977 1.01905 0.97335 1.21492 0.82062 0.80907 0.86292 1.90710 1.56555 1.50417 1.49719 1.45984 1.07213 1.51332 1.31705 1.21635 0.95184 0.93080 0.86009 0.91014 1.22437 0.96917 1.00365 0.96439 1.22008 0.96367 0.98129 0.98114 1.21989 0.94252 0.98630 0.96210 0.91884 1.20859 0.92286 0.97067 0.86384 1.42603 1.04207 1.82783 1.09297 1.19684 0.85232 1.37269 0.95488 0.90458 1.25600 1.02058 1.03191 0.96248 1.69830 1.34550 1.54879 1.02967 0.85114 0.80023 0.77823 0.76649 1.21433 1.22333 1.19243 1.22644 0.93270 1.02724 0.95552 0.74586 0.87394 0.87531 0.93144 0.92963 0.85415 0.85641 0.74375 0.90581 0.93036 0.92288 0.93737 0.96042 0.95669 0.79586 0.94103 0.89706 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.39 19.25 74.32 1.43 -1.96 16 2 C -0.22 -3.48 13.34 31.12 0.42 -3.06 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.06 16 4 C -0.10 -1.35 4.46 30.60 0.14 -1.22 16 5 C -0.13 -1.21 5.70 29.85 0.17 -1.04 16 6 C 0.50 9.70 7.82 87.66 0.69 10.39 16 7 O -0.59 -17.94 15.69 -3.03 -0.05 -17.99 16 8 N -0.71 -11.47 5.11 -437.26 -2.24 -13.71 16 9 C 0.15 3.29 3.15 46.11 0.15 3.44 16 10 H 0.07 1.94 7.67 -2.39 -0.02 1.93 16 11 C -0.12 -3.17 6.53 31.32 0.20 -2.97 16 12 C -0.11 -3.39 6.14 31.32 0.19 -3.19 16 13 C -0.09 -2.84 2.90 -9.72 -0.03 -2.87 16 14 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 15 C 0.16 6.20 5.58 86.38 0.48 6.68 16 16 N -0.75 -38.22 5.46 -343.44 -1.88 -40.10 16 17 C -0.24 -13.77 9.99 84.04 0.84 -12.93 16 18 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 19 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 20 N -0.97 -60.41 13.06 21.65 0.28 -60.12 16 21 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C -0.10 -2.23 5.94 31.93 0.19 -2.04 16 26 H 0.24 1.96 7.80 -4.41 -0.03 1.93 16 27 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 30 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.42 3.68 8.54 -92.71 -0.79 2.89 16 34 H 0.08 1.76 8.04 -2.39 -0.02 1.74 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.97 7.74 -2.39 -0.02 1.95 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.03 0.96 8.01 -2.38 -0.02 0.94 16 40 H 0.37 20.51 7.57 -92.71 -0.70 19.81 16 41 H 0.25 15.09 8.31 -92.71 -0.77 14.31 16 42 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.09 1.68 7.94 -2.39 -0.02 1.66 16 Total: -1.00 -76.10 361.14 3.14 -72.97 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -0.51 Total: 25.37 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 5.49 Total: -14.83 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -3.83 Total: -113.93 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.05 Total: -17.99 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -76.10 3.14 -72.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755733908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.999 kcal (2) G-P(sol) polarization free energy of solvation -76.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds