Wall clock time and date at job start Tue Mar 31 2020 00:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47342 * 2 1 4 4 C 1.50699 * 115.54985 * 294.73614 * 3 2 1 5 5 O 1.21280 * 119.99947 * 122.93093 * 4 3 2 6 6 N 1.34771 * 120.00125 * 302.92706 * 4 3 2 7 7 C 1.46505 * 119.99975 * 175.76457 * 6 4 3 8 8 C 1.50707 * 109.46913 * 179.97438 * 7 6 4 9 9 C 1.29449 * 117.69105 * 95.00716 * 8 7 6 10 10 C 1.50324 * 123.65293 * 180.85739 * 9 8 7 11 11 N 1.47008 * 109.16408 * 349.02123 * 10 9 8 12 12 C 1.36931 * 121.37570 * 222.92578 * 11 10 9 13 13 H 1.08007 * 120.00258 * 149.23353 * 12 11 10 14 14 C 1.38815 * 120.00056 * 329.23656 * 12 11 10 15 15 N 1.31619 * 119.99899 * 359.09202 * 14 12 11 16 16 Si 1.86794 * 120.00285 * 179.09252 * 14 12 11 17 17 H 1.48504 * 109.47097 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47228 * 120.00123 * 16 14 12 19 19 H 1.48503 * 109.47280 * 239.99814 * 16 14 12 20 20 C 1.47350 * 117.23975 * 42.95969 * 11 10 9 21 21 C 1.49966 * 117.69383 * 275.02145 * 8 7 6 22 22 C 1.52999 * 117.49697 * 80.40333 * 3 2 1 23 23 C 1.52994 * 117.49862 * 149.06355 * 3 2 1 24 24 H 1.09003 * 109.47055 * 55.93405 * 1 2 3 25 25 H 1.08996 * 109.47013 * 175.93768 * 1 2 3 26 26 H 1.09002 * 109.46995 * 295.93877 * 1 2 3 27 27 H 1.09003 * 109.46742 * 240.00673 * 2 1 3 28 28 H 1.08989 * 109.47204 * 120.00581 * 2 1 3 29 29 H 0.96998 * 119.99960 * 355.76558 * 6 4 3 30 30 H 1.09006 * 109.46830 * 60.00371 * 7 6 4 31 31 H 1.08992 * 109.47193 * 300.00107 * 7 6 4 32 32 H 1.08001 * 118.17856 * 0.82836 * 9 8 7 33 33 H 1.09002 * 109.51895 * 108.92231 * 10 9 8 34 34 H 1.08998 * 109.52435 * 229.11482 * 10 9 8 35 35 H 0.96996 * 120.00369 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.78100 * 178.60530 * 20 11 10 37 37 H 1.09003 * 109.77423 * 57.79637 * 20 11 10 38 38 H 1.09002 * 109.31683 * 281.28804 * 21 8 7 39 39 H 1.08999 * 109.31799 * 40.72092 * 21 8 7 40 40 H 1.08997 * 117.50149 * 215.00501 * 22 3 2 41 41 H 1.09009 * 117.49607 * 0.02562 * 22 3 2 42 42 H 1.09002 * 117.49766 * 359.97438 * 23 3 2 43 43 H 1.08996 * 117.50143 * 144.97766 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7204 2.2449 -1.2349 5 8 1.1058 3.2861 -1.1392 6 7 2.1175 1.8057 -2.4455 7 6 1.7275 2.5363 -3.6540 8 6 2.2962 1.8433 -4.8654 9 6 1.5367 0.9997 -5.4877 10 6 1.9728 0.2212 -6.6975 11 7 3.2494 0.7627 -7.1855 12 6 3.4782 0.9543 -8.5219 13 1 4.1285 1.7520 -8.8496 14 6 2.8743 0.1233 -9.4556 15 7 2.0959 -0.8598 -9.0556 16 14 3.1662 0.4004 -11.2796 17 1 4.0728 1.5619 -11.4651 18 1 3.7868 -0.8120 -11.8714 19 1 1.8706 0.6719 -11.9527 20 6 4.2726 1.0902 -6.1771 21 6 3.7021 2.1794 -5.2648 22 6 2.0623 2.1839 1.3382 23 6 3.3730 1.7205 0.6977 24 1 -0.3633 0.5757 -0.8513 25 1 -0.3633 -1.0250 -0.0728 26 1 -0.3633 0.4495 0.9242 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 2.6616 1.0058 -2.5167 30 1 2.1137 3.5544 -3.6036 31 1 0.6404 2.5633 -3.7273 32 1 0.5340 0.8463 -5.1169 33 1 2.1009 -0.8275 -6.4290 34 1 1.2176 0.3086 -7.4786 35 1 1.6742 -1.4407 -9.7079 36 1 5.1729 1.4566 -6.6705 37 1 4.5084 0.2029 -5.5894 38 1 3.7086 3.1325 -5.7936 39 1 4.3208 2.2618 -4.3712 40 1 1.8456 3.2521 1.3254 41 1 1.7139 1.6438 2.2186 42 1 3.8864 0.8757 1.1570 43 1 4.0189 2.4835 0.2633 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755892256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:32 Heat of formation + Delta-G solvation = 13.198957 kcal Electronic energy + Delta-G solvation = -21772.712911 eV Core-core repulsion = 18626.074102 eV Total energy + Delta-G solvation = -3146.638808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.22875 -37.97749 -36.90135 -34.91058 -32.89769 -32.07045 -30.86563 -29.73258 -27.23240 -25.01468 -23.91623 -22.86519 -22.66565 -22.24227 -21.05192 -19.51042 -17.67811 -17.06915 -15.99626 -15.76238 -15.62001 -15.10315 -14.83682 -14.24636 -14.07783 -13.90016 -13.59678 -13.45136 -13.19481 -12.87891 -12.57754 -12.23436 -12.03336 -11.86694 -11.69182 -11.58867 -11.40364 -11.35061 -10.87707 -10.82309 -10.61115 -10.38882 -10.32825 -10.19655 -9.90211 -9.78009 -9.58874 -8.93494 -8.71291 -8.05769 -6.67321 -5.83239 -3.29993 2.55575 2.62057 3.35038 3.42465 3.42964 3.44347 3.60445 4.35881 4.45420 4.58283 4.64532 4.78737 5.12026 5.14603 5.24894 5.33438 5.35707 5.39581 5.41570 5.55746 5.63770 5.72474 5.76570 5.83226 5.87204 5.91427 5.94923 6.05949 6.10174 6.16620 6.33316 6.47623 6.55442 6.73625 6.86216 7.17780 7.28834 7.33497 7.62797 7.73344 7.82977 8.28685 8.40542 9.18829 9.78086 10.39307 11.26571 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034749 B = 0.003433 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.592288 B = 8154.794627 C = 8401.753305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.159 4.159 4 C 0.548 3.452 5 O -0.546 6.546 6 N -0.715 5.715 7 C 0.157 3.843 8 C -0.168 4.168 9 C -0.124 4.124 10 C 0.194 3.806 11 N -0.596 5.596 12 C -0.248 4.248 13 H 0.067 0.933 14 C 0.004 3.996 15 N -0.911 5.911 16 Si 0.907 3.093 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.289 1.289 20 C 0.144 3.856 21 C -0.090 4.090 22 C -0.145 4.145 23 C -0.158 4.158 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.402 0.598 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.040 0.960 34 H 0.097 0.903 35 H 0.254 0.746 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 1.443 18.341 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.163 4.163 4 C 0.333 3.667 5 O -0.423 6.423 6 N -0.365 5.365 7 C 0.035 3.965 8 C -0.169 4.169 9 C -0.145 4.145 10 C 0.069 3.931 11 N -0.319 5.319 12 C -0.377 4.377 13 H 0.085 0.915 14 C -0.194 4.194 15 N -0.556 5.556 16 Si 0.736 3.264 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.216 1.216 20 C 0.017 3.983 21 C -0.129 4.129 22 C -0.182 4.182 23 C -0.195 4.195 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.236 0.764 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.028 2.088 18.245 18.364 hybrid contribution 0.232 -0.291 -1.021 1.087 sum 0.204 1.798 17.224 17.318 Atomic orbital electron populations 1.21727 0.95031 1.01747 1.02298 1.21037 0.96454 0.91535 1.02800 1.21555 1.04008 0.97490 0.93210 1.19490 0.78642 0.84840 0.83694 1.90679 1.41102 1.23931 1.86599 1.46128 1.54195 1.30622 1.05547 1.20466 0.98864 0.95185 0.82016 1.20475 0.97650 1.01528 0.97217 1.23355 0.97634 0.95386 0.98099 1.19832 0.89242 0.92962 0.91042 1.44072 1.10149 1.75756 1.01967 1.19208 1.27445 1.09707 0.81371 0.91531 1.25220 0.99933 0.95724 0.98527 1.69927 1.33928 1.19055 1.32685 0.86146 0.77629 0.77472 0.85109 1.20256 1.21546 1.21633 1.20970 0.92218 0.94281 0.90783 1.20750 0.92683 1.00694 0.98766 1.22976 0.99879 1.01369 0.94001 1.23089 0.90065 1.03693 1.02691 0.92624 0.92298 0.92529 0.90979 0.90975 0.76351 0.91691 0.91795 0.88920 0.94203 0.88493 0.93562 0.92462 0.95935 0.91857 0.92955 0.87823 0.88091 0.87830 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.83 37.16 0.37 -1.06 16 2 C -0.08 -0.71 5.79 -26.73 -0.15 -0.87 16 3 C -0.16 -1.66 1.91 -155.66 -0.30 -1.96 16 4 C 0.55 7.63 6.46 -10.99 -0.07 7.56 16 5 O -0.55 -9.63 16.51 5.56 0.09 -9.54 16 6 N -0.71 -9.55 5.53 -61.47 -0.34 -9.89 16 7 C 0.16 2.40 5.66 -5.19 -0.03 2.37 16 8 C -0.17 -2.88 5.22 -100.99 -0.53 -3.40 16 9 C -0.12 -2.34 9.47 -35.78 -0.34 -2.68 16 10 C 0.19 4.54 5.16 -5.10 -0.03 4.51 16 11 N -0.60 -14.72 3.00 -173.66 -0.52 -15.24 16 12 C -0.25 -6.72 9.68 -15.06 -0.15 -6.86 16 13 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 14 C 0.00 0.11 5.27 -17.43 -0.09 0.02 16 15 N -0.91 -25.79 10.78 55.49 0.60 -25.19 16 16 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.14 2.93 6.58 -3.52 -0.02 2.91 16 21 C -0.09 -1.56 5.95 -28.18 -0.17 -1.72 16 22 C -0.14 -1.36 9.76 -26.69 -0.26 -1.62 16 23 C -0.16 -1.36 9.93 -26.70 -0.26 -1.62 16 24 H 0.05 0.64 7.59 -51.93 -0.39 0.24 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.63 7.97 -51.93 -0.41 0.22 16 28 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.40 4.79 8.30 -40.82 -0.34 4.45 16 30 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 31 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 32 H 0.09 1.58 7.73 -52.49 -0.41 1.18 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 2.55 6.46 -51.93 -0.34 2.21 16 35 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.12 7.85 -51.93 -0.41 0.71 16 41 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -30.38 350.65 -9.25 -39.63 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.31 Total: 2.93 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.03 Total: -4.42 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.26 Total: -50.32 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.38 -9.25 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755892256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.830 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds