Wall clock time and date at job start Tue Mar 31 2020 00:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47342 * 2 1 4 4 C 1.50699 * 115.54985 * 294.73614 * 3 2 1 5 5 O 1.21280 * 119.99947 * 122.93093 * 4 3 2 6 6 N 1.34771 * 120.00125 * 302.92706 * 4 3 2 7 7 C 1.46505 * 119.99975 * 175.76457 * 6 4 3 8 8 C 1.50707 * 109.46913 * 179.97438 * 7 6 4 9 9 C 1.29449 * 117.69105 * 95.00716 * 8 7 6 10 10 C 1.50324 * 123.65293 * 180.85739 * 9 8 7 11 11 N 1.47008 * 109.16408 * 349.02123 * 10 9 8 12 12 C 1.36931 * 121.37570 * 222.92578 * 11 10 9 13 13 H 1.08007 * 120.00258 * 149.23353 * 12 11 10 14 14 C 1.38815 * 120.00056 * 329.23656 * 12 11 10 15 15 N 1.31619 * 119.99899 * 359.09202 * 14 12 11 16 16 Si 1.86794 * 120.00285 * 179.09252 * 14 12 11 17 17 H 1.48504 * 109.47097 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47228 * 120.00123 * 16 14 12 19 19 H 1.48503 * 109.47280 * 239.99814 * 16 14 12 20 20 C 1.47350 * 117.23975 * 42.95969 * 11 10 9 21 21 C 1.49966 * 117.69383 * 275.02145 * 8 7 6 22 22 C 1.52999 * 117.49697 * 80.40333 * 3 2 1 23 23 C 1.52994 * 117.49862 * 149.06355 * 3 2 1 24 24 H 1.09003 * 109.47055 * 55.93405 * 1 2 3 25 25 H 1.08996 * 109.47013 * 175.93768 * 1 2 3 26 26 H 1.09002 * 109.46995 * 295.93877 * 1 2 3 27 27 H 1.09003 * 109.46742 * 240.00673 * 2 1 3 28 28 H 1.08989 * 109.47204 * 120.00581 * 2 1 3 29 29 H 0.96998 * 119.99960 * 355.76558 * 6 4 3 30 30 H 1.09006 * 109.46830 * 60.00371 * 7 6 4 31 31 H 1.08992 * 109.47193 * 300.00107 * 7 6 4 32 32 H 1.08001 * 118.17856 * 0.82836 * 9 8 7 33 33 H 1.09002 * 109.51895 * 108.92231 * 10 9 8 34 34 H 1.08998 * 109.52435 * 229.11482 * 10 9 8 35 35 H 0.96996 * 120.00369 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.78100 * 178.60530 * 20 11 10 37 37 H 1.09003 * 109.77423 * 57.79637 * 20 11 10 38 38 H 1.09002 * 109.31683 * 281.28804 * 21 8 7 39 39 H 1.08999 * 109.31799 * 40.72092 * 21 8 7 40 40 H 1.08997 * 117.50149 * 215.00501 * 22 3 2 41 41 H 1.09009 * 117.49607 * 0.02562 * 22 3 2 42 42 H 1.09002 * 117.49766 * 359.97438 * 23 3 2 43 43 H 1.08996 * 117.50143 * 144.97766 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7204 2.2449 -1.2349 5 8 1.1058 3.2861 -1.1392 6 7 2.1175 1.8057 -2.4455 7 6 1.7275 2.5363 -3.6540 8 6 2.2962 1.8433 -4.8654 9 6 1.5367 0.9997 -5.4877 10 6 1.9728 0.2212 -6.6975 11 7 3.2494 0.7627 -7.1855 12 6 3.4782 0.9543 -8.5219 13 1 4.1285 1.7520 -8.8496 14 6 2.8743 0.1233 -9.4556 15 7 2.0959 -0.8598 -9.0556 16 14 3.1662 0.4004 -11.2796 17 1 4.0728 1.5619 -11.4651 18 1 3.7868 -0.8120 -11.8714 19 1 1.8706 0.6719 -11.9527 20 6 4.2726 1.0902 -6.1771 21 6 3.7021 2.1794 -5.2648 22 6 2.0623 2.1839 1.3382 23 6 3.3730 1.7205 0.6977 24 1 -0.3633 0.5757 -0.8513 25 1 -0.3633 -1.0250 -0.0728 26 1 -0.3633 0.4495 0.9242 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 2.6616 1.0058 -2.5167 30 1 2.1137 3.5544 -3.6036 31 1 0.6404 2.5633 -3.7273 32 1 0.5340 0.8463 -5.1169 33 1 2.1009 -0.8275 -6.4290 34 1 1.2176 0.3086 -7.4786 35 1 1.6742 -1.4407 -9.7079 36 1 5.1729 1.4566 -6.6705 37 1 4.5084 0.2029 -5.5894 38 1 3.7086 3.1325 -5.7936 39 1 4.3208 2.2618 -4.3712 40 1 1.8456 3.2521 1.3254 41 1 1.7139 1.6438 2.2186 42 1 3.8864 0.8757 1.1570 43 1 4.0189 2.4835 0.2633 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755892256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:31 Heat of formation + Delta-G solvation = -4.550229 kcal Electronic energy + Delta-G solvation = -21773.482573 eV Core-core repulsion = 18626.074102 eV Total energy + Delta-G solvation = -3147.408471 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26605 -39.47467 -37.90808 -36.39267 -34.53963 -32.85527 -32.52552 -31.42856 -28.79323 -26.45460 -25.06185 -24.35771 -23.63743 -23.18042 -22.64043 -20.57036 -19.47846 -18.08431 -17.33235 -17.19034 -16.98965 -16.52102 -16.03813 -15.60920 -15.35306 -15.13569 -15.06762 -14.77844 -14.33709 -14.15555 -13.88057 -13.62707 -13.33790 -13.28807 -12.95708 -12.75163 -12.65280 -12.60749 -12.38306 -12.20889 -12.11822 -12.04608 -11.75724 -11.34075 -11.28267 -10.97173 -10.82784 -10.70184 -10.12028 -9.65400 -8.65054 -7.88955 -5.38514 1.17133 1.46614 1.47878 1.53725 1.58051 2.36972 2.49644 2.78829 3.29797 3.62110 3.63255 3.76593 3.87555 3.89550 3.95665 4.02969 4.41081 4.42278 4.51929 4.56496 4.58904 4.66383 4.72647 4.76402 4.83900 4.91714 4.98704 5.04340 5.07862 5.10717 5.18632 5.22764 5.23548 5.35741 5.37590 5.42146 5.51952 5.61798 5.75950 6.16666 6.38214 6.54646 7.15334 7.20857 7.82208 8.38664 9.18850 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034749 B = 0.003433 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.592288 B = 8154.794627 C = 8401.753305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.171 4.171 4 C 0.546 3.454 5 O -0.588 6.588 6 N -0.707 5.707 7 C 0.167 3.833 8 C -0.141 4.141 9 C -0.141 4.141 10 C 0.206 3.794 11 N -0.617 5.617 12 C -0.260 4.260 13 H 0.067 0.933 14 C -0.049 4.049 15 N -0.938 5.938 16 Si 0.970 3.030 17 H -0.267 1.267 18 H -0.290 1.290 19 H -0.292 1.292 20 C 0.140 3.860 21 C -0.084 4.084 22 C -0.147 4.147 23 C -0.140 4.140 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.412 0.588 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.015 0.985 34 H 0.060 0.940 35 H 0.250 0.750 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.772 1.567 20.160 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.174 4.174 4 C 0.333 3.667 5 O -0.468 6.468 6 N -0.358 5.358 7 C 0.044 3.956 8 C -0.141 4.141 9 C -0.162 4.162 10 C 0.081 3.919 11 N -0.341 5.341 12 C -0.391 4.391 13 H 0.085 0.915 14 C -0.244 4.244 15 N -0.584 5.584 16 Si 0.798 3.202 17 H -0.191 1.191 18 H -0.217 1.217 19 H -0.219 1.219 20 C 0.015 3.985 21 C -0.123 4.123 22 C -0.184 4.184 23 C -0.177 4.177 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.248 0.752 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.032 0.968 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.262 2.208 20.086 20.247 hybrid contribution -0.122 -0.280 -1.528 1.558 sum 1.140 1.929 18.558 18.693 Atomic orbital electron populations 1.21736 0.95900 1.01981 1.01239 1.21070 0.95632 0.90527 1.04151 1.21542 1.06175 0.97925 0.91803 1.20126 0.77494 0.84461 0.84585 1.90659 1.42961 1.25998 1.87227 1.45989 1.54145 1.30684 1.04932 1.20223 0.98442 0.95043 0.81911 1.20573 0.97205 0.99509 0.96840 1.23012 0.99019 0.96879 0.97250 1.19438 0.88204 0.92564 0.91656 1.44347 1.11612 1.75960 1.02181 1.19514 1.27028 1.09610 0.82901 0.91490 1.25956 1.00093 0.95836 1.02488 1.70106 1.34835 1.19934 1.33574 0.85155 0.77313 0.77447 0.80248 1.19117 1.21652 1.21868 1.21142 0.91577 0.95420 0.90408 1.20690 0.92975 0.99172 0.99421 1.23048 1.00716 1.00464 0.94193 1.23211 0.89237 1.04147 1.01106 0.95345 0.91156 0.92189 0.90872 0.88322 0.75200 0.91660 0.92357 0.87269 0.96762 0.92212 0.94043 0.92215 0.95282 0.92060 0.89509 0.89826 0.85809 0.85040 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.83 71.98 0.71 -1.91 16 2 C -0.08 -1.13 5.79 30.60 0.18 -0.95 16 3 C -0.17 -3.17 1.91 -52.93 -0.10 -3.27 16 4 C 0.55 14.49 6.46 87.66 0.57 15.06 16 5 O -0.59 -20.55 16.51 -3.03 -0.05 -20.60 16 6 N -0.71 -17.61 5.53 -466.78 -2.58 -20.19 16 7 C 0.17 4.85 5.66 85.63 0.48 5.34 16 8 C -0.14 -4.61 5.22 -15.13 -0.08 -4.69 16 9 C -0.14 -5.31 9.47 27.11 0.26 -5.05 16 10 C 0.21 9.94 5.16 85.42 0.44 10.38 16 11 N -0.62 -30.76 3.00 -703.33 -2.11 -32.87 16 12 C -0.26 -14.27 9.68 84.04 0.81 -13.45 16 13 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 14 C -0.05 -2.70 5.27 84.86 0.45 -2.25 16 15 N -0.94 -54.71 10.78 21.65 0.23 -54.48 16 16 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 C 0.14 5.54 6.58 86.25 0.57 6.11 16 21 C -0.08 -2.72 5.95 29.65 0.18 -2.55 16 22 C -0.15 -2.40 9.76 30.62 0.30 -2.10 16 23 C -0.14 -1.94 9.93 30.62 0.30 -1.63 16 24 H 0.03 0.63 7.59 -2.39 -0.02 0.61 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.07 7.97 -2.39 -0.02 1.05 16 28 H 0.10 0.98 8.09 -2.39 -0.02 0.96 16 29 H 0.41 8.79 8.30 -92.71 -0.77 8.02 16 30 H 0.07 1.94 8.11 -2.38 -0.02 1.92 16 31 H 0.06 1.80 7.78 -2.39 -0.02 1.78 16 32 H 0.11 3.72 7.73 -2.91 -0.02 3.70 16 33 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 3.29 6.46 -2.39 -0.02 3.28 16 35 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 36 H 0.06 2.30 7.96 -2.39 -0.02 2.29 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.08 1.73 7.85 -2.39 -0.02 1.71 16 41 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -67.24 350.65 2.79 -64.45 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.21 Total: 17.98 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.06 Total: -0.97 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -4.46 Total: -107.54 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.24 2.79 -64.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755892256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.902 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds