Wall clock time and date at job start Tue Mar 31 2020 01:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46979 * 278.57511 * 3 2 1 5 5 C 1.46845 * 111.00296 * 294.21181 * 4 3 2 6 6 C 1.53034 * 109.52365 * 174.16176 * 5 4 3 7 7 C 1.53116 * 109.28030 * 59.17748 * 6 5 4 8 8 C 1.50698 * 109.52136 * 182.43897 * 7 6 5 9 9 O 1.21297 * 119.99782 * 102.34877 * 8 7 6 10 10 N 1.34773 * 120.00349 * 282.34877 * 8 7 6 11 11 C 1.37101 * 120.00072 * 5.72194 * 10 8 7 12 12 H 1.07999 * 119.99407 * 10.52017 * 11 10 8 13 13 C 1.38942 * 119.99981 * 190.51452 * 11 10 8 14 14 N 1.31412 * 120.00360 * 19.55323 * 13 11 10 15 15 Si 1.86800 * 119.99737 * 199.55322 * 13 11 10 16 16 H 1.48502 * 109.47143 * 90.00048 * 15 13 11 17 17 H 1.48502 * 109.47332 * 209.99811 * 15 13 11 18 18 H 1.48502 * 109.47502 * 330.00160 * 15 13 11 19 19 C 1.46501 * 120.00118 * 185.72698 * 10 8 7 20 20 C 1.52999 * 109.47400 * 83.83667 * 19 10 8 21 21 C 1.52995 * 109.47405 * 174.56246 * 20 19 10 22 22 C 1.53116 * 109.16254 * 302.34505 * 7 6 5 23 23 C 1.46849 * 110.99995 * 170.00167 * 4 3 2 24 24 H 4.40890 * 5.52211 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47217 * 158.58227 * 3 2 1 26 26 H 1.08997 * 109.47296 * 38.57648 * 3 2 1 27 27 H 1.08999 * 109.46138 * 294.17690 * 5 4 3 28 28 H 1.08997 * 109.46296 * 54.14532 * 5 4 3 29 29 H 1.09004 * 109.50086 * 299.23465 * 6 5 4 30 30 H 1.09005 * 109.50403 * 179.11979 * 6 5 4 31 31 H 1.09001 * 109.57569 * 62.28725 * 7 6 5 32 32 H 0.96998 * 120.00149 * 179.97438 * 14 13 11 33 33 H 1.09004 * 109.46815 * 203.83367 * 19 10 8 34 34 H 1.08995 * 109.47292 * 323.83539 * 19 10 8 35 35 H 1.09003 * 109.46867 * 294.56219 * 20 19 10 36 36 H 1.08998 * 109.47238 * 54.55764 * 20 19 10 37 37 H 1.09006 * 109.47162 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.46712 * 299.99448 * 21 20 19 39 39 H 1.08998 * 109.47316 * 59.99566 * 21 20 19 40 40 H 1.09002 * 109.50112 * 297.71637 * 22 7 6 41 41 H 1.08994 * 109.50762 * 177.59101 * 22 7 6 42 42 H 1.09003 * 109.46159 * 305.85338 * 23 4 3 43 43 H 1.08997 * 109.46281 * 65.83578 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.2056 1.3695 5 6 2.7806 0.9286 2.2319 6 6 3.1764 0.6161 3.6768 7 6 4.6833 0.3531 3.7426 8 6 5.0694 -0.0140 5.1523 9 8 5.2754 -1.1736 5.4422 10 7 5.1858 0.9462 6.0908 11 6 4.8402 2.2395 5.7950 12 1 4.3186 2.4622 4.8759 13 6 5.1608 3.2635 6.6776 14 7 6.1009 3.0846 7.5781 15 14 4.2553 4.8947 6.5842 16 1 3.0589 4.8479 7.4627 17 1 5.1559 5.9872 7.0322 18 1 3.8311 5.1460 5.1834 19 6 5.6818 0.6080 7.4272 20 6 7.2117 0.6021 7.4171 21 6 7.7304 0.3831 8.8396 22 6 5.0338 -0.8009 2.7991 23 6 4.5842 -0.4472 1.3797 24 1 -1.0501 0.0002 0.0001 25 1 3.0089 0.9575 -0.3753 26 1 3.0097 -0.8025 -0.6408 27 1 3.3094 1.8203 1.8953 28 1 1.7058 1.1023 2.1793 29 1 2.6374 -0.2676 4.0187 30 1 2.9269 1.4645 4.3141 31 1 5.2241 1.2493 3.4385 32 1 6.3250 3.7997 8.1941 33 1 5.3260 1.3475 8.1446 34 1 5.3166 -0.3789 7.7113 35 1 7.5677 -0.2018 6.7727 36 1 7.5762 1.5579 7.0405 37 1 8.8204 0.3794 8.8325 38 1 7.3744 1.1871 9.4839 39 1 7.3659 -0.5726 9.2162 40 1 4.5240 -1.7068 3.1273 41 1 6.1113 -0.9649 2.8092 42 1 4.8193 -1.2729 0.7080 43 1 5.1045 0.4510 1.0472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067212321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:39 Heat of formation + Delta-G solvation = 24.618552 kcal Electronic energy + Delta-G solvation = -22516.307749 eV Core-core repulsion = 19370.164132 eV Total energy + Delta-G solvation = -3146.143618 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.45788 -37.93709 -35.25919 -34.14039 -32.41776 -31.81277 -31.22904 -30.42049 -27.28446 -25.71214 -24.59572 -22.84890 -22.76654 -20.59151 -19.48747 -18.85570 -18.11825 -17.04973 -16.06702 -15.63700 -15.05924 -14.70035 -14.39982 -14.29290 -13.85906 -13.61255 -13.31907 -13.16487 -12.78313 -12.60961 -12.46366 -11.95832 -11.82638 -11.49251 -11.33458 -11.00363 -10.95213 -10.82728 -10.63861 -10.46812 -10.39681 -10.27244 -10.22692 -10.15421 -9.98670 -9.80032 -9.49983 -8.81391 -8.28145 -8.18243 -7.71511 -6.34414 -3.85939 2.70854 2.84392 3.08726 3.19754 3.20123 3.92934 4.06442 4.14013 4.41718 4.79429 5.03601 5.16154 5.22028 5.33322 5.44721 5.59894 5.62307 5.76863 5.83513 5.92920 5.98801 6.11455 6.15170 6.17430 6.19782 6.41277 6.41751 6.51637 6.58276 6.75932 6.76428 6.92679 6.97402 7.06663 7.12108 7.16650 7.22871 7.37300 7.52853 7.62015 7.75933 7.83420 8.47233 9.09297 9.59634 10.00222 10.62353 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018154 B = 0.005359 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.993466 B = 5223.946032 C = 6379.846305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.160 3.840 4 N -0.535 5.535 5 C 0.059 3.941 6 C -0.106 4.106 7 C -0.089 4.089 8 C 0.459 3.541 9 O -0.610 6.610 10 N -0.442 5.442 11 C -0.332 4.332 12 H 0.102 0.898 13 C 0.034 3.966 14 N -0.857 5.857 15 Si 0.915 3.085 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.138 3.862 20 C -0.113 4.113 21 C -0.134 4.134 22 C -0.094 4.094 23 C 0.059 3.941 24 H 0.216 0.784 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.267 0.733 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.089 0.911 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 -0.921 -9.547 10.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.173 4.173 3 C 0.033 3.967 4 N -0.260 5.260 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.110 4.110 8 C 0.247 3.753 9 O -0.497 6.497 10 N -0.158 5.158 11 C -0.460 4.460 12 H 0.120 0.880 13 C -0.170 4.170 14 N -0.495 5.495 15 Si 0.742 3.258 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 C 0.015 3.985 20 C -0.151 4.151 21 C -0.192 4.192 22 C -0.132 4.132 23 C -0.068 4.068 24 H 0.232 0.768 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.216 -1.754 -9.018 10.108 hybrid contribution -0.174 1.768 -0.288 1.800 sum -4.391 0.013 -9.306 10.290 Atomic orbital electron populations 1.24840 0.95854 1.01768 1.00063 1.22910 0.94256 0.99740 1.00373 1.19008 0.85122 1.01127 0.91451 1.61934 1.14626 1.41836 1.07647 1.22147 1.00400 0.90649 0.93658 1.21576 0.95040 1.02966 0.94806 1.21036 0.96762 0.99011 0.94221 1.19981 0.83200 0.85478 0.86612 1.90510 1.57772 1.19519 1.81915 1.43820 1.55087 1.07237 1.09693 1.19778 1.35985 0.82478 1.07725 0.88026 1.25196 0.95646 0.99337 0.96833 1.70154 1.25886 1.33375 1.20107 0.86120 0.79465 0.81482 0.78754 1.20380 1.21039 1.19585 1.21294 0.93550 0.98135 0.85496 1.21675 0.96761 1.01661 0.95051 1.21562 0.98934 1.00094 0.98577 1.21365 1.00772 0.99141 0.91895 1.22149 0.86061 0.99906 0.98721 0.76754 0.92662 0.88671 0.94706 0.90960 0.91357 0.89776 0.89980 0.92274 0.88380 0.94860 0.95248 0.89273 0.94473 0.92712 0.94581 0.90382 0.91550 0.90802 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.34 19.25 29.55 0.57 -1.77 16 2 C -0.17 -2.19 12.34 -37.12 -0.46 -2.64 16 3 C 0.16 1.89 5.46 -6.61 -0.04 1.85 16 4 N -0.54 -7.68 4.63 -238.18 -1.10 -8.79 16 5 C 0.06 0.90 5.30 -3.84 -0.02 0.88 16 6 C -0.11 -1.90 5.07 -26.65 -0.14 -2.04 16 7 C -0.09 -1.75 1.73 -91.65 -0.16 -1.91 16 8 C 0.46 11.10 6.80 -10.99 -0.07 11.02 16 9 O -0.61 -16.32 15.62 5.54 0.09 -16.24 16 10 N -0.44 -11.01 2.64 -114.81 -0.30 -11.32 16 11 C -0.33 -8.08 8.61 -14.93 -0.13 -8.21 16 12 H 0.10 2.34 4.91 -52.49 -0.26 2.08 16 13 C 0.03 0.82 5.02 -17.47 -0.09 0.74 16 14 N -0.86 -21.03 8.41 55.50 0.47 -20.56 16 15 Si 0.91 18.89 29.60 -169.99 -5.03 13.86 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 C 0.14 3.39 4.57 -4.04 -0.02 3.38 16 20 C -0.11 -2.60 5.58 -26.73 -0.15 -2.75 16 21 C -0.13 -2.60 9.91 37.15 0.37 -2.23 16 22 C -0.09 -1.63 4.86 -26.65 -0.13 -1.76 16 23 C 0.06 0.82 5.46 -3.83 -0.02 0.80 16 24 H 0.22 1.66 7.80 -54.09 -0.42 1.23 16 25 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 26 H 0.10 0.96 7.99 -51.93 -0.41 0.54 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.07 7.11 -51.93 -0.37 0.70 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.08 1.58 6.12 -51.93 -0.32 1.26 16 31 H 0.08 1.64 7.36 -51.93 -0.38 1.25 16 32 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 33 H 0.10 2.49 5.80 -51.93 -0.30 2.19 16 34 H 0.03 0.83 7.54 -51.93 -0.39 0.44 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 2.23 6.53 -51.93 -0.34 1.89 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.50 7.84 -51.93 -0.41 1.09 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.07 0.88 8.02 -51.93 -0.42 0.46 16 43 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -28.04 340.76 -8.19 -36.23 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.96 Total: 6.33 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -0.48 Total: -4.65 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.94 Total: -40.66 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.24 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.04 -8.19 -36.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067212321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.844 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds