Wall clock time and date at job start Tue Mar 31 2020 01:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46979 * 278.57511 * 3 2 1 5 5 C 1.46845 * 111.00296 * 294.21181 * 4 3 2 6 6 C 1.53034 * 109.52365 * 174.16176 * 5 4 3 7 7 C 1.53116 * 109.28030 * 59.17748 * 6 5 4 8 8 C 1.50698 * 109.52136 * 182.43897 * 7 6 5 9 9 O 1.21297 * 119.99782 * 102.34877 * 8 7 6 10 10 N 1.34773 * 120.00349 * 282.34877 * 8 7 6 11 11 C 1.37101 * 120.00072 * 5.72194 * 10 8 7 12 12 H 1.07999 * 119.99407 * 10.52017 * 11 10 8 13 13 C 1.38942 * 119.99981 * 190.51452 * 11 10 8 14 14 N 1.31412 * 120.00360 * 19.55323 * 13 11 10 15 15 Si 1.86800 * 119.99737 * 199.55322 * 13 11 10 16 16 H 1.48502 * 109.47143 * 90.00048 * 15 13 11 17 17 H 1.48502 * 109.47332 * 209.99811 * 15 13 11 18 18 H 1.48502 * 109.47502 * 330.00160 * 15 13 11 19 19 C 1.46501 * 120.00118 * 185.72698 * 10 8 7 20 20 C 1.52999 * 109.47400 * 83.83667 * 19 10 8 21 21 C 1.52995 * 109.47405 * 174.56246 * 20 19 10 22 22 C 1.53116 * 109.16254 * 302.34505 * 7 6 5 23 23 C 1.46849 * 110.99995 * 170.00167 * 4 3 2 24 24 H 4.40890 * 5.52211 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47217 * 158.58227 * 3 2 1 26 26 H 1.08997 * 109.47296 * 38.57648 * 3 2 1 27 27 H 1.08999 * 109.46138 * 294.17690 * 5 4 3 28 28 H 1.08997 * 109.46296 * 54.14532 * 5 4 3 29 29 H 1.09004 * 109.50086 * 299.23465 * 6 5 4 30 30 H 1.09005 * 109.50403 * 179.11979 * 6 5 4 31 31 H 1.09001 * 109.57569 * 62.28725 * 7 6 5 32 32 H 0.96998 * 120.00149 * 179.97438 * 14 13 11 33 33 H 1.09004 * 109.46815 * 203.83367 * 19 10 8 34 34 H 1.08995 * 109.47292 * 323.83539 * 19 10 8 35 35 H 1.09003 * 109.46867 * 294.56219 * 20 19 10 36 36 H 1.08998 * 109.47238 * 54.55764 * 20 19 10 37 37 H 1.09006 * 109.47162 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.46712 * 299.99448 * 21 20 19 39 39 H 1.08998 * 109.47316 * 59.99566 * 21 20 19 40 40 H 1.09002 * 109.50112 * 297.71637 * 22 7 6 41 41 H 1.08994 * 109.50762 * 177.59101 * 22 7 6 42 42 H 1.09003 * 109.46159 * 305.85338 * 23 4 3 43 43 H 1.08997 * 109.46281 * 65.83578 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.2056 1.3695 5 6 2.7806 0.9286 2.2319 6 6 3.1764 0.6161 3.6768 7 6 4.6833 0.3531 3.7426 8 6 5.0694 -0.0140 5.1523 9 8 5.2754 -1.1736 5.4422 10 7 5.1858 0.9462 6.0908 11 6 4.8402 2.2395 5.7950 12 1 4.3186 2.4622 4.8759 13 6 5.1608 3.2635 6.6776 14 7 6.1009 3.0846 7.5781 15 14 4.2553 4.8947 6.5842 16 1 3.0589 4.8479 7.4627 17 1 5.1559 5.9872 7.0322 18 1 3.8311 5.1460 5.1834 19 6 5.6818 0.6080 7.4272 20 6 7.2117 0.6021 7.4171 21 6 7.7304 0.3831 8.8396 22 6 5.0338 -0.8009 2.7991 23 6 4.5842 -0.4472 1.3797 24 1 -1.0501 0.0002 0.0001 25 1 3.0089 0.9575 -0.3753 26 1 3.0097 -0.8025 -0.6408 27 1 3.3094 1.8203 1.8953 28 1 1.7058 1.1023 2.1793 29 1 2.6374 -0.2676 4.0187 30 1 2.9269 1.4645 4.3141 31 1 5.2241 1.2493 3.4385 32 1 6.3250 3.7997 8.1941 33 1 5.3260 1.3475 8.1446 34 1 5.3166 -0.3789 7.7113 35 1 7.5677 -0.2018 6.7727 36 1 7.5762 1.5579 7.0405 37 1 8.8204 0.3794 8.8325 38 1 7.3744 1.1871 9.4839 39 1 7.3659 -0.5726 9.2162 40 1 4.5240 -1.7068 3.1273 41 1 6.1113 -0.9649 2.8092 42 1 4.8193 -1.2729 0.7080 43 1 5.1045 0.4510 1.0472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067212321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:37 Heat of formation + Delta-G solvation = 9.223281 kcal Electronic energy + Delta-G solvation = -22516.975338 eV Core-core repulsion = 19370.164132 eV Total energy + Delta-G solvation = -3146.811207 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.07134 -39.41547 -37.11871 -35.42586 -34.07959 -33.39998 -32.75658 -31.72958 -28.53387 -27.44699 -26.30792 -24.25018 -24.07826 -22.34301 -21.12110 -20.53517 -18.98353 -18.79687 -17.91701 -16.89107 -16.22365 -16.16710 -16.10171 -15.72090 -15.48383 -15.37283 -14.78100 -14.55423 -14.34242 -13.95093 -13.69502 -13.61644 -13.40870 -13.11298 -12.91619 -12.62836 -12.50260 -12.34650 -12.30552 -12.07274 -12.04359 -11.83308 -11.64450 -11.40806 -11.37614 -11.23193 -10.99357 -10.72808 -10.12786 -9.65787 -9.29869 -8.20510 -5.78571 1.43232 1.50815 1.59271 1.80153 1.97734 2.06665 2.32026 3.03106 3.12756 3.17666 3.57224 3.87130 3.97475 4.07396 4.26827 4.31689 4.44490 4.46941 4.50539 4.55960 4.61192 4.65242 4.72683 4.73041 4.82552 4.90013 4.97665 5.03059 5.10008 5.13016 5.16760 5.24879 5.27728 5.32602 5.47723 5.51474 5.62508 5.82880 5.91813 6.07220 6.12308 6.55978 6.76571 7.19018 7.67994 8.09172 8.76661 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018154 B = 0.005359 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.993466 B = 5223.946032 C = 6379.846305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.211 4.211 3 C 0.161 3.839 4 N -0.550 5.550 5 C 0.069 3.931 6 C -0.097 4.097 7 C -0.081 4.081 8 C 0.442 3.558 9 O -0.645 6.645 10 N -0.451 5.451 11 C -0.353 4.353 12 H 0.113 0.887 13 C -0.003 4.003 14 N -0.874 5.874 15 Si 0.981 3.019 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.260 1.260 19 C 0.140 3.860 20 C -0.101 4.101 21 C -0.124 4.124 22 C -0.088 4.088 23 C 0.068 3.932 24 H 0.243 0.757 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.269 0.731 33 H 0.090 0.910 34 H 0.018 0.982 35 H 0.012 0.988 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 0.229 -11.116 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.212 4.212 3 C 0.035 3.965 4 N -0.275 5.275 5 C -0.059 4.059 6 C -0.135 4.135 7 C -0.102 4.102 8 C 0.232 3.768 9 O -0.535 6.535 10 N -0.168 5.168 11 C -0.479 4.479 12 H 0.130 0.870 13 C -0.206 4.206 14 N -0.513 5.513 15 Si 0.805 3.195 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.184 1.184 19 C 0.017 3.983 20 C -0.139 4.139 21 C -0.182 4.182 22 C -0.127 4.127 23 C -0.059 4.059 24 H 0.260 0.740 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.947 -0.598 -10.600 11.712 hybrid contribution 0.043 1.378 0.258 1.403 sum -4.904 0.781 -10.342 11.472 Atomic orbital electron populations 1.25660 0.96816 1.00567 0.98543 1.23343 0.95104 1.00973 1.01759 1.19091 0.84928 1.02595 0.89896 1.61855 1.14785 1.41562 1.09333 1.21987 1.00791 0.91350 0.91723 1.21458 0.93444 1.01598 0.97041 1.21003 0.97849 0.99735 0.91628 1.20818 0.82779 0.84923 0.88259 1.90468 1.59338 1.20853 1.82861 1.44082 1.54903 1.07903 1.09865 1.20111 1.36796 0.82329 1.08707 0.86967 1.25984 0.95906 1.02297 0.96367 1.70243 1.26307 1.34373 1.20340 0.85104 0.77896 0.77345 0.79111 1.20540 1.21064 1.18400 1.21249 0.94559 0.96805 0.85718 1.21513 0.95605 0.99775 0.97049 1.21476 1.00234 1.00574 0.95943 1.21299 1.00295 0.97209 0.93864 1.22072 0.86078 1.01483 0.96306 0.74032 0.91310 0.86827 0.93817 0.90378 0.93214 0.90817 0.90033 0.92082 0.89212 0.96369 0.96924 0.91191 0.92314 0.92736 0.93569 0.92676 0.92066 0.88232 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.97 19.25 74.32 1.43 -2.54 16 2 C -0.21 -4.87 12.34 31.13 0.38 -4.48 16 3 C 0.16 3.37 5.46 84.50 0.46 3.83 16 4 N -0.55 -14.69 4.63 -907.47 -4.21 -18.90 16 5 C 0.07 2.00 5.30 86.33 0.46 2.45 16 6 C -0.10 -3.50 5.07 30.64 0.16 -3.34 16 7 C -0.08 -3.22 1.73 -11.46 -0.02 -3.24 16 8 C 0.44 22.13 6.80 87.66 0.60 22.73 16 9 O -0.65 -36.03 15.62 -3.08 -0.05 -36.08 16 10 N -0.45 -23.17 2.64 -635.54 -1.68 -24.85 16 11 C -0.35 -17.28 8.61 84.04 0.72 -16.56 16 12 H 0.11 5.14 4.91 -2.91 -0.01 5.13 16 13 C 0.00 -0.13 5.02 84.92 0.43 0.29 16 14 N -0.87 -43.02 8.41 21.66 0.18 -42.84 16 15 Si 0.98 38.09 29.60 68.60 2.03 40.12 16 16 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 17 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 19 C 0.14 7.09 4.57 86.38 0.39 7.49 16 20 C -0.10 -4.75 5.58 30.59 0.17 -4.58 16 21 C -0.12 -4.78 9.91 71.98 0.71 -4.06 16 22 C -0.09 -3.08 4.86 30.65 0.15 -2.93 16 23 C 0.07 1.74 5.46 86.33 0.47 2.21 16 24 H 0.24 2.99 7.80 -4.42 -0.03 2.95 16 25 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 26 H 0.11 1.93 7.99 -2.39 -0.02 1.91 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 2.17 7.11 -2.39 -0.02 2.15 16 29 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.07 2.77 6.12 -2.38 -0.01 2.76 16 31 H 0.08 3.24 7.36 -2.39 -0.02 3.23 16 32 H 0.27 12.57 8.31 -92.71 -0.77 11.80 16 33 H 0.09 4.67 5.80 -2.38 -0.01 4.66 16 34 H 0.02 0.95 7.54 -2.39 -0.02 0.93 16 35 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 3.57 6.53 -2.39 -0.02 3.55 16 37 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 2.16 7.84 -2.39 -0.02 2.14 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.10 2.08 8.02 -2.39 -0.02 2.06 16 43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -61.36 340.76 3.77 -57.59 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.97 Total: 27.70 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 6.51 Total: -2.74 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -5.70 Total: -86.58 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.05 Total: -36.08 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -61.36 3.77 -57.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067212321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.811 kcal (2) G-P(sol) polarization free energy of solvation -61.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds