Wall clock time and date at job start Tue Mar 31 2020 00:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35676 * 117.00152 * 2 1 4 4 C 1.38915 * 119.68628 * 179.72960 * 3 2 1 5 5 C 1.38377 * 119.11433 * 179.75124 * 4 3 2 6 6 C 1.38835 * 118.48221 * 0.50847 * 5 4 3 7 7 C 1.38041 * 119.28823 * 359.73126 * 6 5 4 8 8 C 1.50701 * 119.58470 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47159 * 95.01768 * 8 7 6 10 10 C 1.46906 * 110.99842 * 190.00162 * 9 8 7 11 11 C 1.50703 * 109.47128 * 155.67012 * 10 9 8 12 12 H 1.08004 * 119.99698 * 2.96433 * 11 10 9 13 13 C 1.37869 * 120.00141 * 182.95449 * 11 10 9 14 14 N 1.31516 * 119.99972 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00031 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46800 * 60.00521 * 15 13 11 17 17 H 1.48499 * 109.46930 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47498 * 300.00488 * 15 13 11 19 19 C 1.46896 * 111.00059 * 66.05350 * 9 8 7 20 20 C 1.52992 * 109.47228 * 197.36907 * 19 9 8 21 21 C 1.52996 * 109.47401 * 60.96157 * 20 19 9 22 22 C 1.53004 * 109.47298 * 180.96212 * 20 19 9 23 23 N 1.31967 * 120.83726 * 0.02562 * 7 6 5 24 24 H 1.09004 * 109.46949 * 300.00240 * 1 2 3 25 25 H 1.08998 * 109.47084 * 60.00227 * 1 2 3 26 26 H 1.09005 * 109.47620 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.44086 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.76059 * 180.24402 * 5 4 3 29 29 H 1.07999 * 120.35220 * 179.75274 * 6 5 4 30 30 H 1.09001 * 109.47404 * 215.02187 * 8 7 6 31 31 H 1.09007 * 109.46809 * 335.01841 * 8 7 6 32 32 H 1.08995 * 109.47438 * 275.67597 * 10 9 8 33 33 H 1.09002 * 109.46916 * 35.67166 * 10 9 8 34 34 H 0.97001 * 120.00212 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.46838 * 317.36602 * 19 9 8 36 36 H 1.09003 * 109.47357 * 77.36289 * 19 9 8 37 37 H 1.09002 * 109.47532 * 300.95730 * 20 19 9 38 38 H 1.09006 * 109.46973 * 300.00365 * 21 20 19 39 39 H 1.09001 * 109.47544 * 59.99661 * 21 20 19 40 40 H 1.09002 * 109.47689 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47182 * 59.99922 * 22 20 19 42 42 H 1.09002 * 109.47246 * 180.02562 * 22 20 19 43 43 H 1.09007 * 109.46923 * 299.99668 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 0.0057 5 6 4.0485 2.5131 0.0004 6 6 3.2505 3.6491 0.0003 7 6 1.8771 3.5097 -0.0001 8 6 1.0045 4.7383 -0.0007 9 7 0.6227 5.0670 -1.3806 10 6 -0.0261 6.3833 -1.4480 11 6 0.1324 6.9511 -2.8349 12 1 0.6200 6.3701 -3.6038 13 6 -0.3453 8.2121 -3.1223 14 7 -0.9388 8.9197 -2.1860 15 14 -0.1482 8.9161 -4.8413 16 1 -0.8417 8.0386 -5.8181 17 1 -0.7408 10.2769 -4.8898 18 1 1.2950 8.9928 -5.1825 19 6 -0.2414 4.0246 -1.9503 20 6 -0.2663 4.1593 -3.4741 21 6 1.1492 3.9777 -4.0254 22 6 -1.1853 3.0885 -4.0658 23 7 1.3186 2.3140 0.0000 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 4.0228 0.3694 0.0097 28 1 5.1254 2.5946 0.0006 29 1 3.6994 4.6314 0.0003 30 1 0.1078 4.5474 0.5888 31 1 1.5535 5.5741 0.4333 32 1 -1.0861 6.2782 -1.2173 33 1 0.4381 7.0545 -0.7254 34 1 -1.2745 9.8070 -2.3881 35 1 0.1464 3.0428 -1.6786 36 1 -1.2525 4.1368 -1.5589 37 1 -0.6381 5.1473 -3.7455 38 1 1.8039 4.7406 -3.6038 39 1 1.5210 2.9897 -3.7540 40 1 1.1315 4.0732 -5.1111 41 1 -2.1938 3.2179 -3.6731 42 1 -1.2027 3.1842 -5.1514 43 1 -0.8136 2.1004 -3.7944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070093665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:13 Heat of formation + Delta-G solvation = -1.014611 kcal Electronic energy + Delta-G solvation = -22621.664391 eV Core-core repulsion = 19474.409237 eV Total energy + Delta-G solvation = -3147.255155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.52605 -38.14406 -37.08384 -33.85034 -32.79001 -32.10062 -30.74893 -27.87360 -27.08072 -26.41583 -25.99642 -24.01782 -22.76629 -21.91234 -20.65161 -19.01500 -17.95827 -16.70915 -16.24722 -15.97459 -15.82479 -15.12564 -14.62580 -14.35563 -14.10352 -13.99242 -13.53229 -13.19047 -12.86627 -12.55264 -12.44265 -12.16644 -11.97994 -11.71432 -11.63397 -11.42586 -11.24993 -11.06349 -10.95818 -10.69939 -10.51371 -10.16812 -10.10662 -9.88264 -9.66751 -9.63171 -9.18109 -9.03450 -8.35928 -8.27267 -7.23768 -5.99450 -3.98181 1.30721 1.46454 3.17267 3.34874 3.39183 3.42076 3.89847 4.36029 4.46075 4.93233 5.09468 5.17423 5.21995 5.31088 5.34810 5.35642 5.44514 5.65894 5.69186 5.74230 5.79001 5.89324 6.00803 6.15234 6.19308 6.21622 6.32924 6.38796 6.46579 6.49190 6.58613 6.59498 6.75408 6.86570 7.18451 7.23689 7.32931 7.34945 7.46015 7.88851 8.07286 8.13201 8.25392 8.55846 9.08399 9.63791 11.10996 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.005123 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.136085 B = 5463.793542 C = 5922.058350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.313 6.313 3 C 0.315 3.685 4 C -0.203 4.203 5 C -0.044 4.044 6 C -0.190 4.190 7 C 0.193 3.807 8 C 0.099 3.901 9 N -0.526 5.526 10 C 0.193 3.807 11 C -0.502 4.502 12 H 0.077 0.923 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.276 1.276 19 C 0.071 3.929 20 C -0.106 4.106 21 C -0.127 4.127 22 C -0.142 4.142 23 N -0.532 5.532 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.040 0.960 31 H 0.088 0.912 32 H -0.007 1.007 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.067 0.933 36 H 0.019 0.981 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.034 0.966 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 -14.375 4.058 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.221 6.221 3 C 0.136 3.864 4 C -0.224 4.224 5 C -0.069 4.069 6 C -0.211 4.211 7 C 0.056 3.944 8 C -0.030 4.030 9 N -0.250 5.250 10 C 0.068 3.932 11 C -0.540 4.540 12 H 0.095 0.905 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.202 1.202 19 C -0.058 4.058 20 C -0.125 4.125 21 C -0.184 4.184 22 C -0.200 4.200 23 N -0.257 5.257 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.011 0.989 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.187 -14.505 3.818 15.871 hybrid contribution -0.088 0.567 -0.427 0.715 sum 5.099 -13.938 3.391 15.224 Atomic orbital electron populations 1.22814 0.77453 1.02460 1.02669 1.86195 1.22760 1.24928 1.88193 1.19803 0.89320 0.84647 0.92610 1.20935 0.91978 0.99346 1.10098 1.21356 1.00291 0.91306 0.93980 1.21821 0.94115 0.99940 1.05197 1.21011 0.92118 0.91245 0.89996 1.21041 0.96764 0.92112 0.93065 1.62159 1.44448 1.04430 1.13991 1.19817 0.92000 0.83200 0.98142 1.21362 1.36627 0.99920 0.96133 0.90500 1.24990 0.95647 0.97005 0.97030 1.69950 1.39581 1.11639 1.32825 0.86650 0.78441 0.78068 0.84828 1.20257 1.21504 1.20204 1.22095 0.93975 0.94963 0.94742 1.21436 0.95363 1.01219 0.94472 1.21624 0.97645 1.00531 0.98579 1.21819 0.99476 0.98609 1.00090 1.67158 1.40874 0.98455 1.19207 0.92445 0.92170 0.89033 0.84770 0.84468 0.84373 0.94154 0.89386 0.98881 0.95404 0.93005 0.91511 0.96297 0.87196 0.90766 0.95192 0.94712 0.93464 0.93378 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 101.05 1.05 1.53 16 2 O -0.31 -4.35 10.48 -18.73 -0.20 -4.54 16 3 C 0.32 4.71 7.49 -17.12 -0.13 4.58 16 4 C -0.20 -2.59 10.04 -39.28 -0.39 -2.99 16 5 C -0.04 -0.53 10.17 -39.31 -0.40 -0.93 16 6 C -0.19 -2.68 9.71 -39.43 -0.38 -3.07 16 7 C 0.19 3.15 5.75 -82.61 -0.48 2.68 16 8 C 0.10 1.78 5.24 -4.98 -0.03 1.76 16 9 N -0.53 -10.98 3.70 -237.51 -0.88 -11.85 16 10 C 0.19 4.82 4.79 -4.97 -0.02 4.80 16 11 C -0.50 -13.36 7.24 -34.44 -0.25 -13.61 16 12 H 0.08 2.00 4.58 -52.48 -0.24 1.76 16 13 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 14 N -0.90 -26.14 13.29 55.43 0.74 -25.41 16 15 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 C 0.07 1.40 4.27 -3.83 -0.02 1.39 16 20 C -0.11 -2.08 2.40 -90.62 -0.22 -2.30 16 21 C -0.13 -2.37 8.40 37.16 0.31 -2.06 16 22 C -0.14 -2.35 9.19 37.16 0.34 -2.01 16 23 N -0.53 -8.70 7.32 -9.55 -0.07 -8.77 16 24 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 25 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.09 1.50 7.70 -51.93 -0.40 1.10 16 32 H -0.01 -0.18 7.67 -51.93 -0.40 -0.58 16 33 H 0.03 0.74 7.65 -51.93 -0.40 0.34 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.07 1.28 5.55 -51.93 -0.29 0.99 16 36 H 0.02 0.40 7.74 -51.93 -0.40 -0.01 16 37 H 0.11 2.51 5.14 -51.93 -0.27 2.25 16 38 H 0.07 1.53 6.73 -51.93 -0.35 1.18 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -29.37 344.58 -7.89 -37.26 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.95 Total: 0.68 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.71 Total: -8.83 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.21 Total: -46.03 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.20 Total: -4.54 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.37 -7.89 -37.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070093665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.245 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds