Wall clock time and date at job start Tue Mar 31 2020 00:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35674 * 116.99888 * 2 1 4 4 N 1.32278 * 119.68641 * 354.64766 * 3 2 1 5 5 C 1.31930 * 121.64906 * 180.02562 * 4 3 2 6 6 C 1.38091 * 120.83574 * 359.97438 * 5 4 3 7 7 C 1.38783 * 119.28420 * 0.02584 * 6 5 4 8 8 C 1.38417 * 118.48838 * 0.26934 * 7 6 5 9 9 C 1.50697 * 120.44346 * 179.72573 * 8 7 6 10 10 N 1.46909 * 109.47067 * 254.00049 * 9 8 7 11 11 C 1.46899 * 110.99691 * 68.90993 * 10 9 8 12 12 C 1.50706 * 109.46667 * 190.00055 * 11 10 9 13 13 H 1.07995 * 120.00143 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99579 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99772 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00411 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46757 * 90.00232 * 16 14 12 18 18 H 1.48497 * 109.47564 * 210.00365 * 16 14 12 19 19 H 1.48502 * 109.47026 * 330.00764 * 16 14 12 20 20 C 1.46904 * 110.99843 * 192.86238 * 10 9 8 21 21 C 1.52998 * 109.47257 * 75.89874 * 20 10 9 22 22 C 1.53001 * 109.46699 * 64.11562 * 21 20 10 23 23 C 1.52996 * 109.47171 * 184.10781 * 21 20 10 24 24 H 1.08999 * 109.47534 * 64.86909 * 1 2 3 25 25 H 1.09001 * 109.47291 * 184.86697 * 1 2 3 26 26 H 1.09002 * 109.47125 * 304.86767 * 1 2 3 27 27 H 1.08001 * 119.58189 * 180.02562 * 5 4 3 28 28 H 1.08001 * 120.35304 * 180.02562 * 6 5 4 29 29 H 1.08001 * 120.75313 * 180.02562 * 7 6 5 30 30 H 1.08999 * 109.47539 * 14.00347 * 9 8 7 31 31 H 1.09003 * 109.46886 * 134.00324 * 9 8 7 32 32 H 1.09007 * 109.46794 * 309.99333 * 11 10 9 33 33 H 1.08992 * 109.47314 * 70.00169 * 11 10 9 34 34 H 0.97006 * 120.00170 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.46706 * 195.90866 * 20 10 9 36 36 H 1.09003 * 109.46987 * 315.90345 * 20 10 9 37 37 H 1.08994 * 109.47243 * 304.11516 * 21 20 10 38 38 H 1.09005 * 109.47262 * 299.99920 * 22 21 20 39 39 H 1.08993 * 109.47497 * 59.99474 * 22 21 20 40 40 H 1.08998 * 109.47288 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46822 * 64.87252 * 23 21 20 42 42 H 1.08994 * 109.47622 * 184.87306 * 23 21 20 43 43 H 1.09003 * 109.47607 * 304.87763 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3228 2.3120 -0.1072 5 6 1.8814 3.5072 -0.1119 6 6 3.2507 3.6491 -0.0036 7 6 4.0436 2.5158 0.1107 8 6 3.4280 1.2761 0.1063 9 6 4.2471 0.0164 0.2217 10 7 4.3044 -0.6519 -1.0853 11 6 5.1038 0.1272 -2.0402 12 6 4.9405 -0.4519 -3.4220 13 1 4.3066 -1.3127 -3.5753 14 6 5.6012 0.1167 -4.4901 15 7 5.4583 -0.3882 -5.6960 16 14 6.6982 1.6053 -4.2249 17 1 8.0817 1.1540 -3.9289 18 1 6.7023 2.4422 -5.4516 19 1 6.1828 2.4028 -3.0832 20 6 4.8252 -2.0193 -0.9549 21 6 3.7376 -2.9262 -0.3756 22 6 2.5673 -3.0103 -1.3575 23 6 4.3106 -4.3258 -0.1441 24 1 -0.3634 0.4364 -0.9304 25 1 -0.3634 -1.0240 0.0872 26 1 -0.3633 0.5875 0.8432 27 1 1.2597 4.3859 -0.2007 28 1 3.6997 4.6313 -0.0079 29 1 5.1169 2.5992 0.1972 30 1 5.2569 0.2680 0.5458 31 1 3.7870 -0.6505 0.9510 32 1 4.7646 1.1631 -2.0380 33 1 6.1542 0.0881 -1.7517 34 1 5.9229 0.0120 -6.4477 35 1 5.1228 -2.3897 -1.9359 36 1 5.6888 -2.0173 -0.2899 37 1 3.3884 -2.5153 0.5716 38 1 2.1591 -2.0131 -1.5225 39 1 2.9165 -3.4211 -2.3047 40 1 1.7927 -3.6567 -0.9450 41 1 5.0868 -4.2789 0.6197 42 1 3.5154 -4.9939 0.1866 43 1 4.7379 -4.7019 -1.0737 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095007655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:49 Heat of formation + Delta-G solvation = -3.486116 kcal Electronic energy + Delta-G solvation = -22898.717346 eV Core-core repulsion = 19751.355019 eV Total energy + Delta-G solvation = -3147.362327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.40249 -37.61276 -37.38740 -34.30346 -32.78256 -31.84581 -30.65131 -27.95898 -27.06988 -26.53772 -26.05830 -23.81174 -22.68788 -21.91615 -20.35137 -19.13917 -18.00849 -16.83416 -16.68813 -15.74905 -15.50374 -14.96625 -14.50882 -14.36454 -13.92759 -13.82873 -13.59617 -13.22363 -13.03437 -12.79901 -12.49684 -12.34630 -12.04218 -11.85836 -11.71825 -11.58134 -11.16561 -10.91686 -10.89664 -10.72786 -10.58678 -10.33043 -10.10103 -9.88811 -9.75800 -9.40263 -9.38237 -9.16582 -8.54049 -8.07162 -7.27700 -6.01660 -3.97476 1.41687 1.57539 3.28174 3.36134 3.37631 3.45366 4.02253 4.44286 4.56174 4.84668 5.08216 5.24045 5.27241 5.31590 5.43130 5.44176 5.50133 5.54457 5.57559 5.67115 5.79694 5.83235 5.89357 6.03495 6.07719 6.18395 6.29084 6.31544 6.41017 6.46283 6.54699 6.58579 6.68925 6.70051 6.87751 6.99498 7.06464 7.18948 7.58778 7.67303 7.98769 8.10361 8.15351 8.71191 9.09011 9.60903 11.11565 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011206 B = 0.008583 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.120470 B = 3261.603455 C = 4834.934769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.283 6.283 3 C 0.343 3.657 4 N -0.546 5.546 5 C 0.129 3.871 6 C -0.214 4.214 7 C -0.041 4.041 8 C -0.131 4.131 9 C 0.103 3.897 10 N -0.512 5.512 11 C 0.161 3.839 12 C -0.502 4.502 13 H 0.082 0.918 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.871 3.129 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.267 1.267 20 C 0.066 3.934 21 C -0.087 4.087 22 C -0.131 4.131 23 C -0.145 4.145 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.153 0.847 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.028 0.972 33 H -0.020 1.020 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.016 0.984 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.032 0.968 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 2.340 14.529 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.189 6.189 3 C 0.163 3.837 4 N -0.270 5.270 5 C -0.027 4.027 6 C -0.235 4.235 7 C -0.067 4.067 8 C -0.134 4.134 9 C -0.026 4.026 10 N -0.236 5.236 11 C 0.035 3.965 12 C -0.541 4.541 13 H 0.100 0.900 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.699 3.301 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.192 1.192 20 C -0.062 4.062 21 C -0.106 4.106 22 C -0.189 4.189 23 C -0.203 4.203 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.170 0.830 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.046 0.954 33 H -0.002 1.002 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.829 1.963 14.076 15.768 hybrid contribution 2.168 1.242 0.207 2.507 sum -4.660 3.205 14.283 15.362 Atomic orbital electron populations 1.22781 0.78462 1.02383 1.01861 1.86384 1.21564 1.23815 1.87114 1.19546 0.88805 0.84511 0.90802 1.67294 1.40958 0.98928 1.19788 1.22235 0.92750 0.93582 0.94119 1.21852 0.95050 0.99450 1.07133 1.21341 1.00227 0.91157 0.93986 1.19849 0.91605 0.96339 1.05593 1.20827 0.95959 0.92077 0.93730 1.61898 1.54069 1.01620 1.05973 1.20200 0.89688 0.94224 0.92379 1.21043 1.28184 1.15497 0.89331 0.89955 1.24883 0.96515 0.96790 0.95149 1.69893 1.43634 1.41307 0.99211 0.86924 0.81395 0.83947 0.77881 1.20437 1.21263 1.19209 1.22109 0.93757 0.88913 1.01391 1.21054 0.96529 0.94105 0.98876 1.21649 0.96484 1.02525 0.98203 1.21828 1.00163 0.97101 1.01241 0.92529 0.89065 0.93085 0.82980 0.85077 0.84851 0.95155 0.90358 0.95419 1.00246 0.92799 0.89057 0.96531 0.92184 0.90609 0.93330 0.94939 0.93564 0.93265 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.40 101.05 1.05 1.59 16 2 O -0.28 -4.77 9.45 -18.72 -0.18 -4.95 16 3 C 0.34 6.04 7.46 -17.12 -0.13 5.91 16 4 N -0.55 -9.01 9.22 -13.33 -0.12 -9.14 16 5 C 0.13 1.81 11.18 -17.56 -0.20 1.62 16 6 C -0.21 -2.95 10.11 -39.43 -0.40 -3.35 16 7 C -0.04 -0.64 9.08 -39.31 -0.36 -1.00 16 8 C -0.13 -2.28 4.56 -104.32 -0.48 -2.75 16 9 C 0.10 1.80 4.55 -4.97 -0.02 1.77 16 10 N -0.51 -10.58 3.81 -237.50 -0.90 -11.48 16 11 C 0.16 3.90 3.65 -4.97 -0.02 3.89 16 12 C -0.50 -14.24 8.79 -34.44 -0.30 -14.54 16 13 H 0.08 2.54 7.56 -52.49 -0.40 2.15 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 16 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.27 -6.39 6.54 56.52 0.37 -6.03 16 20 C 0.07 1.26 4.21 -3.82 -0.02 1.24 16 21 C -0.09 -1.40 2.97 -90.62 -0.27 -1.67 16 22 C -0.13 -2.24 9.07 37.16 0.34 -1.91 16 23 C -0.15 -2.00 9.19 37.16 0.34 -1.66 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.61 8.05 -51.93 -0.42 0.20 16 27 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.13 1.88 8.04 -52.49 -0.42 1.46 16 30 H 0.03 0.51 7.94 -51.93 -0.41 0.09 16 31 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 32 H 0.03 0.70 5.62 -51.93 -0.29 0.40 16 33 H -0.02 -0.49 7.55 -51.93 -0.39 -0.88 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.09 2.00 6.58 -51.93 -0.34 1.66 16 36 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16 37 H 0.06 0.94 6.67 -51.93 -0.35 0.59 16 38 H 0.07 1.47 7.33 -51.93 -0.38 1.09 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -31.76 346.52 -7.55 -39.31 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.12 Total: -0.02 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -0.55 Total: -8.98 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.25 Total: -47.62 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.18 Total: -4.95 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.76 -7.55 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095007655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.825 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds