Wall clock time and date at job start Tue Mar 31 2020 00:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35674 * 116.99888 * 2 1 4 4 N 1.32278 * 119.68641 * 354.64766 * 3 2 1 5 5 C 1.31930 * 121.64906 * 180.02562 * 4 3 2 6 6 C 1.38091 * 120.83574 * 359.97438 * 5 4 3 7 7 C 1.38783 * 119.28420 * 0.02584 * 6 5 4 8 8 C 1.38417 * 118.48838 * 0.26934 * 7 6 5 9 9 C 1.50697 * 120.44346 * 179.72573 * 8 7 6 10 10 N 1.46909 * 109.47067 * 254.00049 * 9 8 7 11 11 C 1.46899 * 110.99691 * 68.90993 * 10 9 8 12 12 C 1.50706 * 109.46667 * 190.00055 * 11 10 9 13 13 H 1.07995 * 120.00143 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99579 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99772 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00411 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46757 * 90.00232 * 16 14 12 18 18 H 1.48497 * 109.47564 * 210.00365 * 16 14 12 19 19 H 1.48502 * 109.47026 * 330.00764 * 16 14 12 20 20 C 1.46904 * 110.99843 * 192.86238 * 10 9 8 21 21 C 1.52998 * 109.47257 * 75.89874 * 20 10 9 22 22 C 1.53001 * 109.46699 * 64.11562 * 21 20 10 23 23 C 1.52996 * 109.47171 * 184.10781 * 21 20 10 24 24 H 1.08999 * 109.47534 * 64.86909 * 1 2 3 25 25 H 1.09001 * 109.47291 * 184.86697 * 1 2 3 26 26 H 1.09002 * 109.47125 * 304.86767 * 1 2 3 27 27 H 1.08001 * 119.58189 * 180.02562 * 5 4 3 28 28 H 1.08001 * 120.35304 * 180.02562 * 6 5 4 29 29 H 1.08001 * 120.75313 * 180.02562 * 7 6 5 30 30 H 1.08999 * 109.47539 * 14.00347 * 9 8 7 31 31 H 1.09003 * 109.46886 * 134.00324 * 9 8 7 32 32 H 1.09007 * 109.46794 * 309.99333 * 11 10 9 33 33 H 1.08992 * 109.47314 * 70.00169 * 11 10 9 34 34 H 0.97006 * 120.00170 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.46706 * 195.90866 * 20 10 9 36 36 H 1.09003 * 109.46987 * 315.90345 * 20 10 9 37 37 H 1.08994 * 109.47243 * 304.11516 * 21 20 10 38 38 H 1.09005 * 109.47262 * 299.99920 * 22 21 20 39 39 H 1.08993 * 109.47497 * 59.99474 * 22 21 20 40 40 H 1.08998 * 109.47288 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46822 * 64.87252 * 23 21 20 42 42 H 1.08994 * 109.47622 * 184.87306 * 23 21 20 43 43 H 1.09003 * 109.47607 * 304.87763 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3228 2.3120 -0.1072 5 6 1.8814 3.5072 -0.1119 6 6 3.2507 3.6491 -0.0036 7 6 4.0436 2.5158 0.1107 8 6 3.4280 1.2761 0.1063 9 6 4.2471 0.0164 0.2217 10 7 4.3044 -0.6519 -1.0853 11 6 5.1038 0.1272 -2.0402 12 6 4.9405 -0.4519 -3.4220 13 1 4.3066 -1.3127 -3.5753 14 6 5.6012 0.1167 -4.4901 15 7 5.4583 -0.3882 -5.6960 16 14 6.6982 1.6053 -4.2249 17 1 8.0817 1.1540 -3.9289 18 1 6.7023 2.4422 -5.4516 19 1 6.1828 2.4028 -3.0832 20 6 4.8252 -2.0193 -0.9549 21 6 3.7376 -2.9262 -0.3756 22 6 2.5673 -3.0103 -1.3575 23 6 4.3106 -4.3258 -0.1441 24 1 -0.3634 0.4364 -0.9304 25 1 -0.3634 -1.0240 0.0872 26 1 -0.3633 0.5875 0.8432 27 1 1.2597 4.3859 -0.2007 28 1 3.6997 4.6313 -0.0079 29 1 5.1169 2.5992 0.1972 30 1 5.2569 0.2680 0.5458 31 1 3.7870 -0.6505 0.9510 32 1 4.7646 1.1631 -2.0380 33 1 6.1542 0.0881 -1.7517 34 1 5.9229 0.0120 -6.4477 35 1 5.1228 -2.3897 -1.9359 36 1 5.6888 -2.0173 -0.2899 37 1 3.3884 -2.5153 0.5716 38 1 2.1591 -2.0131 -1.5225 39 1 2.9165 -3.4211 -2.3047 40 1 1.7927 -3.6567 -0.9450 41 1 5.0868 -4.2789 0.6197 42 1 3.5154 -4.9939 0.1866 43 1 4.7379 -4.7019 -1.0737 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095007655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:48 Heat of formation + Delta-G solvation = -25.207529 kcal Electronic energy + Delta-G solvation = -22899.659257 eV Core-core repulsion = 19751.355019 eV Total energy + Delta-G solvation = -3148.304239 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58153 -39.06207 -38.61886 -35.71582 -34.72843 -33.32176 -31.88630 -29.83357 -28.18190 -27.82363 -27.39430 -25.52261 -23.85061 -23.34895 -21.96969 -20.57620 -19.16701 -18.94076 -17.92156 -17.02060 -16.78319 -16.50975 -16.03831 -15.88792 -15.30750 -15.09191 -15.00517 -14.76917 -14.32441 -14.20310 -13.98191 -13.82216 -13.53470 -13.37932 -12.99047 -12.80129 -12.68828 -12.60503 -12.35360 -12.09779 -12.02667 -11.83164 -11.69046 -11.58143 -11.35108 -11.19010 -10.77635 -10.62668 -10.53752 -9.25113 -8.87980 -8.26045 -6.27378 0.25301 0.41728 1.31231 1.33633 1.44078 2.33647 2.34433 2.83403 3.07276 3.38189 3.46853 3.95688 4.02635 4.06668 4.13943 4.26766 4.35160 4.44398 4.49164 4.50850 4.56904 4.59018 4.75868 4.81021 4.82270 4.84619 4.91350 4.96747 5.07538 5.12326 5.16828 5.18912 5.25137 5.34624 5.36574 5.57431 5.61194 5.62548 5.73687 6.06787 6.41938 6.48663 6.72770 6.79614 6.97169 7.35348 8.90682 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011206 B = 0.008583 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.120470 B = 3261.603455 C = 4834.934769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.302 6.302 3 C 0.322 3.678 4 N -0.562 5.562 5 C 0.124 3.876 6 C -0.209 4.209 7 C -0.051 4.051 8 C -0.159 4.159 9 C 0.108 3.892 10 N -0.525 5.525 11 C 0.177 3.823 12 C -0.505 4.505 13 H 0.037 0.963 14 C 0.006 3.994 15 N -0.950 5.950 16 Si 0.941 3.059 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.247 1.247 20 C 0.069 3.931 21 C -0.078 4.078 22 C -0.124 4.124 23 C -0.140 4.140 24 H 0.043 0.957 25 H 0.114 0.886 26 H 0.060 0.940 27 H 0.188 0.812 28 H 0.166 0.834 29 H 0.148 0.852 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.025 0.975 33 H -0.018 1.018 34 H 0.264 0.736 35 H 0.051 0.949 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.023 0.977 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 4.001 16.839 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.143 3.857 4 N -0.286 5.286 5 C -0.031 4.031 6 C -0.229 4.229 7 C -0.077 4.077 8 C -0.162 4.162 9 C -0.019 4.019 10 N -0.248 5.248 11 C 0.050 3.950 12 C -0.543 4.543 13 H 0.056 0.944 14 C -0.191 4.191 15 N -0.591 5.591 16 Si 0.764 3.236 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.170 1.170 20 C -0.059 4.059 21 C -0.097 4.097 22 C -0.181 4.181 23 C -0.198 4.198 24 H 0.062 0.938 25 H 0.132 0.868 26 H 0.079 0.921 27 H 0.205 0.795 28 H 0.184 0.816 29 H 0.166 0.834 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.000 1.000 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.450 3.611 16.417 18.005 hybrid contribution 1.934 0.704 -0.513 2.121 sum -4.516 4.315 15.904 17.087 Atomic orbital electron populations 1.22933 0.77020 1.03975 1.01573 1.86342 1.23147 1.24078 1.87222 1.19777 0.89252 0.85010 0.91655 1.67348 1.41410 0.99530 1.20302 1.22940 0.93749 0.93829 0.92623 1.22254 0.94832 1.00451 1.05364 1.21670 1.01270 0.91156 0.93603 1.19976 0.91754 0.96912 1.07564 1.20820 0.96803 0.92465 0.91859 1.61797 1.53449 1.02038 1.07526 1.19874 0.90152 0.94037 0.90974 1.21258 1.26958 1.14172 0.91938 0.94432 1.25818 0.98313 1.00325 0.94649 1.70060 1.45319 1.43371 1.00367 0.85805 0.79467 0.79846 0.78446 1.19230 1.21004 1.17030 1.22073 0.95432 0.88754 0.99656 1.21002 0.95088 0.95042 0.98592 1.21555 0.97643 1.01290 0.97636 1.21779 1.01175 0.95573 1.01236 0.93789 0.86774 0.92099 0.79515 0.81611 0.83449 0.93996 0.89260 0.95742 1.00041 0.92685 0.93087 0.95174 0.90841 0.93244 0.95824 0.92174 0.91959 0.91208 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.03 10.40 113.37 1.18 2.21 16 2 O -0.30 -10.12 9.45 -89.92 -0.85 -10.97 16 3 C 0.32 11.12 7.46 84.78 0.63 11.76 16 4 N -0.56 -17.82 9.22 -308.94 -2.85 -20.66 16 5 C 0.12 3.16 11.18 84.64 0.95 4.10 16 6 C -0.21 -5.07 10.11 22.37 0.23 -4.84 16 7 C -0.05 -1.47 9.08 22.44 0.20 -1.27 16 8 C -0.16 -5.34 4.56 -19.67 -0.09 -5.43 16 9 C 0.11 3.67 4.55 85.55 0.39 4.06 16 10 N -0.52 -21.78 3.81 -905.33 -3.45 -25.23 16 11 C 0.18 8.57 3.65 85.56 0.31 8.88 16 12 C -0.50 -29.70 8.79 25.60 0.22 -29.47 16 13 H 0.04 2.48 7.56 -2.91 -0.02 2.46 16 14 C 0.01 0.33 5.47 84.65 0.46 0.79 16 15 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 16 Si 0.94 44.65 27.47 68.60 1.88 46.54 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 19 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 20 C 0.07 2.65 4.21 86.30 0.36 3.01 16 21 C -0.08 -2.48 2.97 -10.80 -0.03 -2.51 16 22 C -0.12 -4.31 9.07 71.98 0.65 -3.66 16 23 C -0.14 -3.63 9.19 71.98 0.66 -2.97 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 1.42 8.05 -2.39 -0.02 1.40 16 27 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 29 H 0.15 3.71 8.04 -2.91 -0.02 3.68 16 30 H 0.04 1.31 7.94 -2.39 -0.02 1.29 16 31 H 0.09 2.77 6.43 -2.39 -0.02 2.76 16 32 H 0.02 1.21 5.62 -2.38 -0.01 1.19 16 33 H -0.02 -0.86 7.55 -2.39 -0.02 -0.88 16 34 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 35 H 0.05 2.36 6.58 -2.39 -0.02 2.35 16 36 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 37 H 0.07 2.16 6.67 -2.39 -0.02 2.14 16 38 H 0.05 1.97 7.33 -2.38 -0.02 1.95 16 39 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -71.63 346.52 2.08 -69.55 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.91 Total: 16.38 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 6.13 Total: -15.33 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -6.00 Total: -106.17 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.85 Total: -10.97 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -71.63 2.08 -69.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095007655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.343 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds