Wall clock time and date at job start Tue Mar 31 2020 00:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00089 * 2 1 4 4 N 1.46739 * 109.47234 * 123.62000 * 3 2 1 5 5 C 1.48330 * 109.66161 * 55.45340 * 4 3 2 6 6 C 1.54484 * 107.15767 * 116.98038 * 5 4 3 7 7 C 1.55131 * 103.36909 * 342.48337 * 6 5 4 8 8 C 1.46607 * 113.85076 * 176.52312 * 4 3 2 9 9 C 1.51741 * 114.50324 * 27.38962 * 8 4 3 10 10 C 1.52849 * 111.57286 * 67.05270 * 9 8 4 11 11 C 1.53243 * 109.33488 * 59.08200 * 10 9 8 12 12 N 1.46873 * 108.40813 * 305.20111 * 11 10 9 13 13 C 1.34707 * 120.66425 * 235.49559 * 12 11 10 14 14 O 1.21688 * 120.00428 * 174.86159 * 13 12 11 15 15 C 1.46378 * 119.99628 * 354.85888 * 13 12 11 16 16 H 1.07999 * 119.99898 * 5.07209 * 15 13 12 17 17 C 1.40054 * 119.99725 * 185.07252 * 15 13 12 18 18 N 1.30667 * 120.00055 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 119.99846 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47422 * 59.99221 * 19 17 15 21 21 H 1.48493 * 109.47397 * 180.02562 * 19 17 15 22 22 H 1.48513 * 109.46870 * 299.99722 * 19 17 15 23 23 C 1.46867 * 118.62008 * 55.49675 * 12 11 10 24 24 H 1.07991 * 120.00478 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99317 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99922 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47213 * 3.61773 * 3 2 1 28 28 H 1.09004 * 109.46651 * 243.61207 * 3 2 1 29 29 H 1.09188 * 109.87285 * 237.04863 * 5 4 3 30 30 H 1.09417 * 109.80019 * 357.29269 * 5 4 3 31 31 H 1.09220 * 111.01139 * 101.24846 * 6 5 4 32 32 H 1.09194 * 111.16396 * 223.74199 * 6 5 4 33 33 H 1.08682 * 111.22924 * 276.58321 * 7 6 5 34 34 H 1.08636 * 111.39221 * 151.66841 * 7 6 5 35 35 H 1.08441 * 112.45043 * 301.92067 * 9 8 4 36 36 H 1.10526 * 108.07516 * 184.78814 * 9 8 4 37 37 H 1.08702 * 110.77443 * 298.44536 * 10 9 8 38 38 H 1.09335 * 109.28178 * 178.53649 * 10 9 8 39 39 H 1.08848 * 109.74427 * 185.28204 * 11 10 9 40 40 H 1.08896 * 109.52958 * 64.75120 * 11 10 9 41 41 H 0.96999 * 119.99858 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.51205 * 66.14321 * 23 12 11 43 43 H 1.09006 * 109.60285 * 186.42272 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9715 1.3457 1.1520 5 6 3.8632 0.1606 1.1267 6 6 5.3089 0.6814 0.9676 7 6 5.1130 2.1337 0.4587 8 6 3.8140 2.5445 1.2009 9 6 3.2124 3.7643 0.5279 10 6 1.9793 4.2687 1.2771 11 6 2.3705 4.6273 2.7147 12 7 3.0125 3.4565 3.3265 13 6 2.5433 2.9392 4.4783 14 8 3.0243 1.9149 4.9259 15 6 1.4548 3.6093 5.1917 16 1 0.9729 4.4713 4.7546 17 6 1.0385 3.1326 6.4410 18 7 1.6213 2.0894 6.9696 19 14 -0.3510 3.9872 7.3511 20 1 -1.5831 3.9477 6.5231 21 1 -0.5982 3.2940 8.6408 22 1 0.0242 5.4001 7.6130 23 6 4.1763 2.8620 2.6563 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3571 2.1325 0.0648 28 1 2.6408 1.3913 -0.9206 29 1 3.7598 -0.4016 2.0570 30 1 3.5989 -0.4842 0.2832 31 1 5.8352 0.6745 1.9246 32 1 5.8632 0.0887 0.2370 33 1 4.9627 2.1568 -0.6174 34 1 5.9391 2.7730 0.7572 35 1 2.9819 3.5892 -0.5171 36 1 3.9644 4.5740 0.5501 37 1 1.2009 3.5100 1.2933 38 1 1.5926 5.1606 0.7768 39 1 1.4813 4.8982 3.2811 40 1 3.0686 5.4630 2.7043 41 1 1.3332 1.7594 7.8351 42 1 5.0073 3.5670 2.6762 43 1 4.4634 1.9434 3.1682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096071466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:04 Heat of formation + Delta-G solvation = -1.160761 kcal Electronic energy + Delta-G solvation = -23429.423113 eV Core-core repulsion = 20282.161620 eV Total energy + Delta-G solvation = -3147.261492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.17999 -37.29157 -35.09468 -34.28813 -32.45675 -31.42725 -30.50848 -29.72909 -26.77746 -25.49019 -24.66629 -23.82452 -21.78983 -20.85374 -19.61699 -19.01068 -18.13141 -16.43887 -15.83851 -15.69048 -15.36718 -14.73180 -14.57085 -14.04823 -13.92485 -13.62979 -13.07774 -12.86430 -12.63637 -12.55386 -12.30452 -12.18783 -11.97405 -11.47878 -11.33917 -11.17978 -11.01974 -10.91643 -10.83913 -10.66138 -10.43545 -10.30301 -10.29984 -10.12221 -9.87900 -9.64275 -9.30830 -8.74279 -7.80604 -7.39526 -6.96447 -6.07416 -4.51060 2.43811 3.21194 3.25934 3.27449 4.16650 4.25482 4.66130 4.72388 4.85385 4.93185 5.05422 5.13875 5.28730 5.32611 5.39078 5.47873 5.54926 5.62090 5.74919 5.85562 5.88037 5.94003 5.96364 6.01724 6.05519 6.10166 6.20829 6.25429 6.28372 6.31672 6.43509 6.55487 6.63874 6.74096 6.76039 6.86488 6.96149 7.39024 7.56219 7.62357 7.81672 8.28106 8.51744 9.14200 9.63253 10.72277 10.93469 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.006096 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.466393 B = 4592.083206 C = 4836.161356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C 0.081 3.919 4 N -0.498 5.498 5 C 0.042 3.958 6 C -0.141 4.141 7 C -0.149 4.149 8 C 0.102 3.898 9 C -0.105 4.105 10 C -0.132 4.132 11 C 0.124 3.876 12 N -0.630 5.630 13 C 0.568 3.432 14 O -0.575 6.575 15 C -0.545 4.545 16 H 0.069 0.931 17 C 0.089 3.911 18 N -0.770 5.770 19 Si 0.902 3.098 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.269 1.269 23 C 0.143 3.857 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.266 0.734 42 H 0.038 0.962 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 0.971 -14.894 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.165 4.165 3 C -0.046 4.046 4 N -0.221 5.221 5 C -0.086 4.086 6 C -0.179 4.179 7 C -0.189 4.189 8 C 0.011 3.989 9 C -0.143 4.143 10 C -0.171 4.171 11 C -0.001 4.001 12 N -0.367 5.367 13 C 0.373 3.627 14 O -0.457 6.457 15 C -0.582 4.582 16 H 0.087 0.913 17 C -0.130 4.130 18 N -0.399 5.399 19 Si 0.727 3.273 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.194 1.194 23 C 0.018 3.982 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.300 0.280 -14.005 14.196 hybrid contribution -0.222 0.480 -0.417 0.674 sum 2.078 0.760 -14.423 14.591 Atomic orbital electron populations 1.23756 0.95845 1.01643 1.00917 1.22917 0.96033 0.97976 0.99587 1.21290 0.95717 0.96051 0.91569 1.62957 1.18391 1.01073 1.39666 1.23194 0.90182 0.93482 1.01723 1.22820 0.97661 0.95928 1.01534 1.23223 0.99239 0.96821 0.99584 1.21874 0.90216 0.89818 0.97013 1.21295 0.98458 0.96677 0.97895 1.21917 0.97486 1.00523 0.97175 1.21349 0.98226 0.88429 0.92120 1.47925 1.31766 1.31424 1.25543 1.18066 0.83006 0.83790 0.77791 1.90572 1.62434 1.25486 1.67206 1.20938 1.18485 1.15154 1.03629 0.91256 1.25686 0.96160 0.93955 0.97202 1.70010 1.35906 1.19053 1.14920 0.86529 0.81922 0.79978 0.78858 1.19357 1.20665 1.19390 1.21096 0.88583 0.98802 0.89714 0.88696 0.88606 0.87642 0.90116 0.95085 0.90282 0.92613 0.90802 0.91833 0.91910 0.90827 0.92510 0.92335 0.91176 0.92527 0.89060 0.94459 0.92273 0.94345 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 14.32 29.01 0.42 -2.01 16 2 C -0.15 -2.05 8.84 -36.03 -0.32 -2.37 16 3 C 0.08 1.18 4.22 -5.06 -0.02 1.16 16 4 N -0.50 -8.51 4.78 -217.56 -1.04 -9.55 16 5 C 0.04 0.64 5.99 -2.25 -0.01 0.63 16 6 C -0.14 -1.89 6.36 -24.82 -0.16 -2.05 16 7 C -0.15 -1.97 5.84 -24.47 -0.14 -2.11 16 8 C 0.10 1.64 0.53 -131.11 -0.07 1.57 16 9 C -0.11 -1.50 3.71 -27.45 -0.10 -1.60 16 10 C -0.13 -2.08 5.80 -26.68 -0.15 -2.24 16 11 C 0.12 2.35 6.32 -3.71 -0.02 2.33 16 12 N -0.63 -14.60 2.96 -174.55 -0.52 -15.12 16 13 C 0.57 16.46 7.62 -13.02 -0.10 16.37 16 14 O -0.57 -18.90 14.46 5.20 0.08 -18.82 16 15 C -0.55 -15.58 8.87 -35.63 -0.32 -15.90 16 16 H 0.07 1.81 5.67 -52.49 -0.30 1.51 16 17 C 0.09 2.53 5.50 -17.37 -0.10 2.43 16 18 N -0.77 -23.50 11.84 55.55 0.66 -22.84 16 19 Si 0.90 20.50 29.56 -169.99 -5.02 15.48 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 C 0.14 2.89 5.05 -3.69 -0.02 2.87 16 24 H 0.09 1.11 8.06 -52.49 -0.42 0.68 16 25 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 26 H 0.11 1.38 6.65 -52.48 -0.35 1.03 16 27 H 0.08 1.22 5.21 -51.93 -0.27 0.95 16 28 H 0.03 0.41 7.97 -51.93 -0.41 0.00 16 29 H 0.08 1.40 8.16 -51.82 -0.42 0.98 16 30 H 0.06 0.74 5.90 -51.69 -0.30 0.44 16 31 H 0.07 1.06 7.77 -51.80 -0.40 0.66 16 32 H 0.06 0.71 8.16 -51.82 -0.42 0.29 16 33 H 0.06 0.75 8.07 -52.11 -0.42 0.33 16 34 H 0.07 0.91 7.85 -52.13 -0.41 0.51 16 35 H 0.06 0.72 7.22 -52.24 -0.38 0.34 16 36 H 0.06 0.78 8.26 -51.06 -0.42 0.36 16 37 H 0.07 1.23 6.43 -52.10 -0.33 0.89 16 38 H 0.06 0.74 8.17 -51.74 -0.42 0.31 16 39 H 0.09 1.84 5.35 -52.01 -0.28 1.57 16 40 H 0.04 0.65 8.13 -51.99 -0.42 0.22 16 41 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 42 H 0.04 0.72 7.94 -51.93 -0.41 0.30 16 43 H 0.09 2.04 6.01 -51.93 -0.31 1.73 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -34.06 327.00 -8.70 -42.76 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.66 Total: 4.09 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.12 Total: -0.92 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.90 Total: -47.51 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.08 Total: -18.82 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.06 -8.70 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096071466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.597 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds