Wall clock time and date at job start Tue Mar 31 2020 00:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00089 * 2 1 4 4 N 1.46739 * 109.47234 * 123.62000 * 3 2 1 5 5 C 1.48330 * 109.66161 * 55.45340 * 4 3 2 6 6 C 1.54484 * 107.15767 * 116.98038 * 5 4 3 7 7 C 1.55131 * 103.36909 * 342.48337 * 6 5 4 8 8 C 1.46607 * 113.85076 * 176.52312 * 4 3 2 9 9 C 1.51741 * 114.50324 * 27.38962 * 8 4 3 10 10 C 1.52849 * 111.57286 * 67.05270 * 9 8 4 11 11 C 1.53243 * 109.33488 * 59.08200 * 10 9 8 12 12 N 1.46873 * 108.40813 * 305.20111 * 11 10 9 13 13 C 1.34707 * 120.66425 * 235.49559 * 12 11 10 14 14 O 1.21688 * 120.00428 * 174.86159 * 13 12 11 15 15 C 1.46378 * 119.99628 * 354.85888 * 13 12 11 16 16 H 1.07999 * 119.99898 * 5.07209 * 15 13 12 17 17 C 1.40054 * 119.99725 * 185.07252 * 15 13 12 18 18 N 1.30667 * 120.00055 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 119.99846 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47422 * 59.99221 * 19 17 15 21 21 H 1.48493 * 109.47397 * 180.02562 * 19 17 15 22 22 H 1.48513 * 109.46870 * 299.99722 * 19 17 15 23 23 C 1.46867 * 118.62008 * 55.49675 * 12 11 10 24 24 H 1.07991 * 120.00478 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99317 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99922 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47213 * 3.61773 * 3 2 1 28 28 H 1.09004 * 109.46651 * 243.61207 * 3 2 1 29 29 H 1.09188 * 109.87285 * 237.04863 * 5 4 3 30 30 H 1.09417 * 109.80019 * 357.29269 * 5 4 3 31 31 H 1.09220 * 111.01139 * 101.24846 * 6 5 4 32 32 H 1.09194 * 111.16396 * 223.74199 * 6 5 4 33 33 H 1.08682 * 111.22924 * 276.58321 * 7 6 5 34 34 H 1.08636 * 111.39221 * 151.66841 * 7 6 5 35 35 H 1.08441 * 112.45043 * 301.92067 * 9 8 4 36 36 H 1.10526 * 108.07516 * 184.78814 * 9 8 4 37 37 H 1.08702 * 110.77443 * 298.44536 * 10 9 8 38 38 H 1.09335 * 109.28178 * 178.53649 * 10 9 8 39 39 H 1.08848 * 109.74427 * 185.28204 * 11 10 9 40 40 H 1.08896 * 109.52958 * 64.75120 * 11 10 9 41 41 H 0.96999 * 119.99858 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.51205 * 66.14321 * 23 12 11 43 43 H 1.09006 * 109.60285 * 186.42272 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9715 1.3457 1.1520 5 6 3.8632 0.1606 1.1267 6 6 5.3089 0.6814 0.9676 7 6 5.1130 2.1337 0.4587 8 6 3.8140 2.5445 1.2009 9 6 3.2124 3.7643 0.5279 10 6 1.9793 4.2687 1.2771 11 6 2.3705 4.6273 2.7147 12 7 3.0125 3.4565 3.3265 13 6 2.5433 2.9392 4.4783 14 8 3.0243 1.9149 4.9259 15 6 1.4548 3.6093 5.1917 16 1 0.9729 4.4713 4.7546 17 6 1.0385 3.1326 6.4410 18 7 1.6213 2.0894 6.9696 19 14 -0.3510 3.9872 7.3511 20 1 -1.5831 3.9477 6.5231 21 1 -0.5982 3.2940 8.6408 22 1 0.0242 5.4001 7.6130 23 6 4.1763 2.8620 2.6563 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3571 2.1325 0.0648 28 1 2.6408 1.3913 -0.9206 29 1 3.7598 -0.4016 2.0570 30 1 3.5989 -0.4842 0.2832 31 1 5.8352 0.6745 1.9246 32 1 5.8632 0.0887 0.2370 33 1 4.9627 2.1568 -0.6174 34 1 5.9391 2.7730 0.7572 35 1 2.9819 3.5892 -0.5171 36 1 3.9644 4.5740 0.5501 37 1 1.2009 3.5100 1.2933 38 1 1.5926 5.1606 0.7768 39 1 1.4813 4.8982 3.2811 40 1 3.0686 5.4630 2.7043 41 1 1.3332 1.7594 7.8351 42 1 5.0073 3.5670 2.6762 43 1 4.4634 1.9434 3.1682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096071466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:04 Heat of formation + Delta-G solvation = -24.922112 kcal Electronic energy + Delta-G solvation = -23430.453482 eV Core-core repulsion = 20282.161620 eV Total energy + Delta-G solvation = -3148.291862 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48540 -39.14269 -36.78634 -35.43709 -34.60972 -33.04809 -31.70767 -31.09188 -28.69749 -26.86979 -26.00504 -25.40710 -23.08163 -22.14243 -21.35292 -20.21906 -19.49434 -18.28569 -17.72550 -17.01712 -16.74757 -16.24389 -15.97168 -15.62424 -15.35939 -15.14920 -14.56277 -14.27054 -14.09068 -13.80726 -13.62406 -13.53835 -13.32563 -13.21051 -13.01876 -12.70732 -12.67046 -12.46913 -12.14641 -12.09388 -11.99982 -11.81602 -11.60458 -11.48308 -11.25180 -11.10070 -10.86881 -10.38681 -9.64752 -9.11918 -8.72603 -8.21679 -6.75145 1.36594 1.38961 1.43411 1.53795 2.26609 2.55466 2.95830 3.13272 3.67528 3.68878 3.82190 3.89308 4.01984 4.15208 4.20031 4.24748 4.27355 4.38147 4.44373 4.58010 4.63363 4.71732 4.80424 4.82616 4.88761 4.94861 4.99951 5.01242 5.03356 5.08496 5.09256 5.13885 5.24632 5.37116 5.45420 5.52266 5.70614 5.88570 5.89612 6.18266 6.24519 6.47480 6.57971 6.94858 7.59317 8.59575 8.78613 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.006096 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.466393 B = 4592.083206 C = 4836.161356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.087 3.913 4 N -0.536 5.536 5 C 0.043 3.957 6 C -0.137 4.137 7 C -0.135 4.135 8 C 0.103 3.897 9 C -0.102 4.102 10 C -0.124 4.124 11 C 0.116 3.884 12 N -0.632 5.632 13 C 0.550 3.450 14 O -0.632 6.632 15 C -0.572 4.572 16 H 0.089 0.911 17 C 0.029 3.971 18 N -0.826 5.826 19 Si 0.991 3.009 20 H -0.256 1.256 21 H -0.276 1.276 22 H -0.252 1.252 23 C 0.140 3.860 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.271 0.729 42 H 0.053 0.947 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 3.031 -17.517 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.181 4.181 3 C -0.040 4.040 4 N -0.259 5.259 5 C -0.085 4.085 6 C -0.176 4.176 7 C -0.175 4.175 8 C 0.012 3.988 9 C -0.140 4.140 10 C -0.162 4.162 11 C -0.007 4.007 12 N -0.367 5.367 13 C 0.355 3.645 14 O -0.519 6.519 15 C -0.608 4.608 16 H 0.107 0.893 17 C -0.186 4.186 18 N -0.456 5.456 19 Si 0.811 3.189 20 H -0.180 1.180 21 H -0.201 1.201 22 H -0.176 1.176 23 C 0.016 3.984 24 H 0.127 0.873 25 H 0.115 0.885 26 H 0.128 0.872 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.635 2.385 -16.698 16.947 hybrid contribution 0.021 -0.174 0.392 0.429 sum 1.655 2.211 -16.306 16.538 Atomic orbital electron populations 1.23943 0.95841 1.02409 1.00005 1.23047 0.96450 0.98207 1.00414 1.21255 0.95279 0.96011 0.91425 1.62736 1.19612 1.01761 1.41831 1.23092 0.91580 0.93355 1.00432 1.22787 0.96314 0.97062 1.01419 1.23171 0.97690 0.96041 1.00585 1.21750 0.92095 0.90618 0.94291 1.21299 0.97957 0.95974 0.98794 1.21824 0.97757 1.01493 0.95105 1.21581 0.97801 0.87460 0.93890 1.47768 1.32258 1.32210 1.24462 1.18456 0.83288 0.83406 0.79322 1.90520 1.64207 1.27853 1.69302 1.21476 1.18986 1.15936 1.04447 0.89275 1.26949 0.99155 0.94411 0.98043 1.70209 1.38325 1.21372 1.15684 0.85176 0.77634 0.78994 0.77125 1.17992 1.20102 1.17611 1.21249 0.88000 0.96992 0.92179 0.87346 0.88528 0.87156 0.90674 0.92861 0.94591 0.90329 0.92971 0.88855 0.89194 0.89804 0.89605 0.90408 0.93416 0.88831 0.90776 0.92189 0.91964 0.92882 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.69 14.32 67.78 0.97 -3.72 16 2 C -0.16 -4.39 8.84 25.64 0.23 -4.17 16 3 C 0.09 2.38 4.22 85.59 0.36 2.75 16 4 N -0.54 -18.16 4.78 -842.22 -4.02 -22.18 16 5 C 0.04 1.34 5.99 86.53 0.52 1.86 16 6 C -0.14 -3.56 6.36 31.83 0.20 -3.36 16 7 C -0.14 -3.18 5.84 32.06 0.19 -2.99 16 8 C 0.10 3.16 0.53 4.01 0.00 3.16 16 9 C -0.10 -2.54 3.71 30.13 0.11 -2.43 16 10 C -0.12 -3.55 5.80 30.63 0.18 -3.37 16 11 C 0.12 4.29 6.32 86.39 0.55 4.84 16 12 N -0.63 -30.00 2.96 -824.41 -2.44 -32.44 16 13 C 0.55 33.46 7.62 86.37 0.66 34.11 16 14 O -0.63 -44.48 14.46 -4.31 -0.06 -44.54 16 15 C -0.57 -33.62 8.87 24.83 0.22 -33.40 16 16 H 0.09 4.70 5.67 -2.91 -0.02 4.68 16 17 C 0.03 1.66 5.50 85.31 0.47 2.13 16 18 N -0.83 -52.75 11.84 21.84 0.26 -52.49 16 19 Si 0.99 42.54 29.56 68.60 2.03 44.57 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 23 C 0.14 5.77 5.05 86.41 0.44 6.21 16 24 H 0.11 2.41 8.06 -2.92 -0.02 2.38 16 25 H 0.10 2.41 7.84 -2.91 -0.02 2.39 16 26 H 0.11 2.81 6.65 -2.91 -0.02 2.79 16 27 H 0.08 2.12 5.21 -2.39 -0.01 2.11 16 28 H 0.05 1.22 7.97 -2.39 -0.02 1.20 16 29 H 0.04 1.39 8.16 -2.29 -0.02 1.37 16 30 H 0.08 2.03 5.90 -2.17 -0.01 2.01 16 31 H 0.05 1.56 7.77 -2.27 -0.02 1.54 16 32 H 0.09 1.86 8.16 -2.28 -0.02 1.84 16 33 H 0.09 1.69 8.07 -2.55 -0.02 1.67 16 34 H 0.08 1.82 7.85 -2.58 -0.02 1.80 16 35 H 0.09 1.71 7.22 -2.68 -0.02 1.69 16 36 H 0.08 1.68 8.26 -1.57 -0.01 1.67 16 37 H 0.05 1.60 6.43 -2.54 -0.02 1.58 16 38 H 0.09 2.03 8.17 -2.21 -0.02 2.02 16 39 H 0.07 2.97 5.35 -2.47 -0.01 2.95 16 40 H 0.06 1.95 8.13 -2.44 -0.02 1.93 16 41 H 0.27 15.76 8.29 -92.71 -0.77 14.99 16 42 H 0.05 1.97 7.94 -2.39 -0.02 1.95 16 43 H 0.04 2.18 6.01 -2.38 -0.01 2.17 16 Total: -1.00 -80.39 327.00 1.85 -78.54 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 1.00 Total: 26.93 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.09 Total: 1.62 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -6.20 Total: -107.11 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.06 Total: -44.54 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -80.39 1.85 -78.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096071466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.619 kcal (2) G-P(sol) polarization free energy of solvation -80.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds