Wall clock time and date at job start Tue Mar 31 2020 00:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00589 * 2 1 4 4 N 1.46873 * 109.47031 * 124.99846 * 3 2 1 5 5 C 1.48448 * 109.47458 * 290.12935 * 4 3 2 6 6 C 1.54354 * 107.15517 * 255.09314 * 5 4 3 7 7 C 1.55129 * 104.16555 * 9.09500 * 6 5 4 8 8 C 1.47069 * 112.84365 * 171.87369 * 4 3 2 9 9 C 1.51565 * 114.15877 * 322.47430 * 8 4 3 10 10 C 1.53025 * 110.80815 * 296.16374 * 9 8 4 11 11 C 1.53141 * 109.77837 * 300.77238 * 10 9 8 12 12 N 1.46757 * 109.13185 * 52.73026 * 11 10 9 13 13 C 1.34947 * 120.47418 * 127.19337 * 12 11 10 14 14 O 1.21696 * 119.99760 * 354.51780 * 13 12 11 15 15 C 1.46375 * 120.00452 * 174.51626 * 13 12 11 16 16 H 1.08004 * 119.99826 * 5.01958 * 15 13 12 17 17 C 1.40045 * 120.00128 * 185.02304 * 15 13 12 18 18 N 1.30668 * 120.00380 * 5.05509 * 17 15 13 19 19 Si 1.86805 * 119.99987 * 185.05335 * 17 15 13 20 20 H 1.48506 * 109.46756 * 84.99797 * 19 17 15 21 21 H 1.48500 * 109.47285 * 204.99984 * 19 17 15 22 22 H 1.48506 * 109.46964 * 325.00182 * 19 17 15 23 23 C 1.46743 * 118.90752 * 306.95550 * 12 11 10 24 24 H 1.08009 * 119.99453 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00537 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.99453 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46849 * 5.00361 * 3 2 1 28 28 H 1.08994 * 109.47087 * 244.99922 * 3 2 1 29 29 H 1.09192 * 109.75083 * 15.06806 * 5 4 3 30 30 H 1.09257 * 109.58776 * 135.25348 * 5 4 3 31 31 H 1.09308 * 111.19006 * 128.32513 * 6 5 4 32 32 H 1.09435 * 110.67992 * 250.55237 * 6 5 4 33 33 H 1.08693 * 111.18118 * 212.05146 * 7 6 5 34 34 H 1.08770 * 111.05021 * 87.44605 * 7 6 5 35 35 H 1.08308 * 112.51850 * 60.62449 * 9 8 4 36 36 H 1.10478 * 108.35490 * 178.26682 * 9 8 4 37 37 H 1.09437 * 109.09115 * 181.56977 * 10 9 8 38 38 H 1.08685 * 110.32724 * 61.39473 * 10 9 8 39 39 H 1.09031 * 109.61493 * 292.14328 * 11 10 9 40 40 H 1.09138 * 109.34910 * 172.42150 * 11 10 9 41 41 H 0.97003 * 120.00598 * 180.02562 * 18 17 15 42 42 H 1.09109 * 109.51650 * 294.14153 * 23 12 11 43 43 H 1.08768 * 109.93825 * 173.61764 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9962 1.3318 1.1343 5 6 2.2310 1.4398 2.4018 6 6 2.3824 2.8920 2.9027 7 6 3.0720 3.6298 1.7251 8 6 3.9052 2.4874 1.0991 9 6 4.3735 2.8660 -0.2918 10 6 5.2079 1.7417 -0.9093 11 6 6.4261 1.4557 -0.0265 12 7 5.9774 1.2201 1.3508 13 6 6.3536 0.1055 2.0120 14 8 6.9861 -0.7597 1.4354 15 6 6.0009 -0.0630 3.4226 16 1 5.3713 0.6651 3.9125 17 6 6.4799 -1.1682 4.1370 18 7 7.3203 -1.9956 3.5744 19 14 5.9173 -1.4597 5.8943 20 1 4.6312 -2.2022 5.8855 21 1 6.9428 -2.2541 6.6171 22 1 5.7304 -0.1542 6.5771 23 6 5.1182 2.2186 1.9975 24 1 -0.5400 0.9354 0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 1.1800 1.2066 2.2192 30 1 2.6365 0.7391 3.1354 31 1 1.4087 3.3384 3.1205 32 1 3.0138 2.9288 3.7958 33 1 3.7188 4.4256 2.0852 34 1 2.3378 4.0059 1.0162 35 1 3.5540 3.1368 -0.9461 36 1 5.0208 3.7576 -0.2103 37 1 5.5541 2.0550 -1.8990 38 1 4.6117 0.8380 -1.0051 39 1 7.1081 2.3058 -0.0572 40 1 6.9413 0.5680 -0.3976 41 1 7.6518 -2.7613 4.0690 42 1 5.6761 3.1464 2.1334 43 1 4.7826 1.8490 2.9638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096071467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:08 Heat of formation + Delta-G solvation = -3.839829 kcal Electronic energy + Delta-G solvation = -23569.137343 eV Core-core repulsion = 20421.759677 eV Total energy + Delta-G solvation = -3147.377666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.28396 -37.32728 -35.08820 -34.19869 -32.39973 -31.73418 -30.38260 -29.69457 -26.41647 -26.08771 -24.47957 -23.94950 -21.55695 -20.70136 -19.65751 -19.10933 -18.24655 -16.50297 -15.87427 -15.60680 -15.27356 -15.01087 -14.25737 -14.13555 -13.95104 -13.57372 -13.32532 -13.12182 -12.51383 -12.45242 -12.40118 -12.01668 -11.97156 -11.41330 -11.38242 -11.23602 -11.00442 -10.97355 -10.89328 -10.66294 -10.41936 -10.36032 -10.32416 -10.13901 -9.94688 -9.68311 -9.24630 -8.75195 -7.95653 -7.43451 -7.00516 -6.10850 -4.51196 2.37298 3.18809 3.25131 3.26864 4.15342 4.22129 4.65100 4.70406 4.84099 4.92207 5.01472 5.20295 5.28766 5.29413 5.41403 5.48828 5.58735 5.61358 5.75880 5.78211 5.88102 5.88791 5.93618 6.03207 6.04892 6.13455 6.19153 6.24390 6.26531 6.32061 6.47233 6.53058 6.61341 6.72448 6.75260 6.81898 6.88809 7.33999 7.53341 7.56866 7.80548 8.27716 8.50224 9.13019 9.59681 10.69830 10.89972 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.007166 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.510578 B = 3906.159252 C = 4441.323229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 C 0.071 3.929 4 N -0.487 5.487 5 C 0.037 3.963 6 C -0.146 4.146 7 C -0.148 4.148 8 C 0.092 3.908 9 C -0.103 4.103 10 C -0.127 4.127 11 C 0.121 3.879 12 N -0.628 5.628 13 C 0.569 3.431 14 O -0.582 6.582 15 C -0.537 4.537 16 H 0.069 0.931 17 C 0.090 3.910 18 N -0.771 5.771 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.266 1.266 23 C 0.146 3.854 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.031 0.969 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.081 0.919 41 H 0.267 0.733 42 H 0.039 0.961 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 10.472 -4.234 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.145 4.145 3 C -0.056 4.056 4 N -0.209 5.209 5 C -0.091 4.091 6 C -0.184 4.184 7 C -0.188 4.188 8 C 0.001 3.999 9 C -0.141 4.141 10 C -0.165 4.165 11 C -0.003 4.003 12 N -0.365 5.365 13 C 0.375 3.625 14 O -0.465 6.465 15 C -0.573 4.573 16 H 0.087 0.913 17 C -0.129 4.129 18 N -0.400 5.400 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.191 1.191 23 C 0.021 3.979 24 H 0.108 0.892 25 H 0.114 0.886 26 H 0.133 0.867 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.600 9.320 -4.570 14.836 hybrid contribution -0.955 0.732 0.883 1.493 sum -11.556 10.053 -3.687 15.754 Atomic orbital electron populations 1.23746 0.95868 1.01309 1.03666 1.22999 0.95356 0.99161 0.96938 1.21391 0.94219 0.93977 0.96051 1.63873 1.15276 1.40841 1.00911 1.23203 0.97393 0.95819 0.92715 1.22928 1.00446 0.96297 0.98769 1.23128 0.99208 0.98763 0.97724 1.21967 0.94292 0.87741 0.95944 1.21247 0.99521 0.98623 0.94743 1.21846 0.98187 0.98675 0.97821 1.21038 0.94327 1.00446 0.84494 1.47855 1.53149 1.23091 1.12412 1.18146 0.78443 0.78745 0.87148 1.90574 1.44881 1.41602 1.69484 1.20883 1.32952 1.09271 0.94222 0.91279 1.25682 0.93293 0.95068 0.98904 1.70001 1.23105 1.10620 1.36289 0.86510 0.78993 0.78949 0.83011 1.19686 1.20652 1.19056 1.21326 0.88344 0.91636 0.96596 0.89221 0.88633 0.86727 0.95065 0.89862 0.92120 0.89669 0.91973 0.90855 0.90777 0.91907 0.92484 0.92272 0.92675 0.91190 0.94615 0.90042 0.92268 0.94242 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.42 14.12 29.01 0.41 -2.01 16 2 C -0.13 -1.73 8.78 -36.03 -0.32 -2.05 16 3 C 0.07 0.99 4.31 -4.99 -0.02 0.97 16 4 N -0.49 -7.91 4.77 -217.56 -1.04 -8.95 16 5 C 0.04 0.55 5.85 -2.26 -0.01 0.54 16 6 C -0.15 -1.85 6.30 -24.90 -0.16 -2.01 16 7 C -0.15 -1.86 5.59 -24.75 -0.14 -2.00 16 8 C 0.09 1.41 0.44 -131.21 -0.06 1.35 16 9 C -0.10 -1.46 3.82 -27.44 -0.10 -1.56 16 10 C -0.13 -2.05 5.73 -26.65 -0.15 -2.20 16 11 C 0.12 2.44 6.45 -3.83 -0.02 2.42 16 12 N -0.63 -14.46 2.98 -174.58 -0.52 -14.98 16 13 C 0.57 16.38 7.61 -12.91 -0.10 16.28 16 14 O -0.58 -19.16 14.47 5.19 0.08 -19.08 16 15 C -0.54 -15.10 8.86 -35.63 -0.32 -15.42 16 16 H 0.07 1.79 5.71 -52.48 -0.30 1.49 16 17 C 0.09 2.52 5.49 -17.37 -0.10 2.42 16 18 N -0.77 -23.39 11.87 55.55 0.66 -22.73 16 19 Si 0.90 20.31 29.56 -169.99 -5.03 15.28 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C 0.15 2.77 4.88 -3.74 -0.02 2.75 16 24 H 0.09 0.94 7.84 -52.48 -0.41 0.53 16 25 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 27 H 0.03 0.40 7.27 -51.93 -0.38 0.02 16 28 H 0.08 1.16 5.35 -51.93 -0.28 0.89 16 29 H 0.06 0.84 6.81 -51.82 -0.35 0.48 16 30 H 0.08 1.47 8.16 -51.78 -0.42 1.05 16 31 H 0.06 0.68 8.17 -51.75 -0.42 0.26 16 32 H 0.07 0.96 7.82 -51.68 -0.40 0.55 16 33 H 0.07 0.87 7.98 -52.10 -0.42 0.45 16 34 H 0.06 0.73 7.82 -52.06 -0.41 0.32 16 35 H 0.06 0.70 7.00 -52.32 -0.37 0.34 16 36 H 0.06 0.78 8.26 -51.08 -0.42 0.36 16 37 H 0.05 0.75 8.18 -51.68 -0.42 0.33 16 38 H 0.07 1.26 7.05 -52.11 -0.37 0.89 16 39 H 0.04 0.66 8.14 -51.91 -0.42 0.24 16 40 H 0.08 1.86 6.98 -51.85 -0.36 1.50 16 41 H 0.27 7.37 8.29 -40.82 -0.34 7.04 16 42 H 0.04 0.69 8.08 -51.87 -0.42 0.27 16 43 H 0.10 1.94 4.06 -52.06 -0.21 1.73 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -33.41 328.31 -8.77 -42.18 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.77 Total: 3.85 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.10 Total: -0.52 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.90 Total: -46.66 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.08 Total: -19.08 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.41 -8.77 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096071467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.344 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds