Wall clock time and date at job start Tue Mar 31 2020 00:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00589 * 2 1 4 4 N 1.46873 * 109.47031 * 124.99846 * 3 2 1 5 5 C 1.48448 * 109.47458 * 290.12935 * 4 3 2 6 6 C 1.54354 * 107.15517 * 255.09314 * 5 4 3 7 7 C 1.55129 * 104.16555 * 9.09500 * 6 5 4 8 8 C 1.47069 * 112.84365 * 171.87369 * 4 3 2 9 9 C 1.51565 * 114.15877 * 322.47430 * 8 4 3 10 10 C 1.53025 * 110.80815 * 296.16374 * 9 8 4 11 11 C 1.53141 * 109.77837 * 300.77238 * 10 9 8 12 12 N 1.46757 * 109.13185 * 52.73026 * 11 10 9 13 13 C 1.34947 * 120.47418 * 127.19337 * 12 11 10 14 14 O 1.21696 * 119.99760 * 354.51780 * 13 12 11 15 15 C 1.46375 * 120.00452 * 174.51626 * 13 12 11 16 16 H 1.08004 * 119.99826 * 5.01958 * 15 13 12 17 17 C 1.40045 * 120.00128 * 185.02304 * 15 13 12 18 18 N 1.30668 * 120.00380 * 5.05509 * 17 15 13 19 19 Si 1.86805 * 119.99987 * 185.05335 * 17 15 13 20 20 H 1.48506 * 109.46756 * 84.99797 * 19 17 15 21 21 H 1.48500 * 109.47285 * 204.99984 * 19 17 15 22 22 H 1.48506 * 109.46964 * 325.00182 * 19 17 15 23 23 C 1.46743 * 118.90752 * 306.95550 * 12 11 10 24 24 H 1.08009 * 119.99453 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00537 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.99453 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46849 * 5.00361 * 3 2 1 28 28 H 1.08994 * 109.47087 * 244.99922 * 3 2 1 29 29 H 1.09192 * 109.75083 * 15.06806 * 5 4 3 30 30 H 1.09257 * 109.58776 * 135.25348 * 5 4 3 31 31 H 1.09308 * 111.19006 * 128.32513 * 6 5 4 32 32 H 1.09435 * 110.67992 * 250.55237 * 6 5 4 33 33 H 1.08693 * 111.18118 * 212.05146 * 7 6 5 34 34 H 1.08770 * 111.05021 * 87.44605 * 7 6 5 35 35 H 1.08308 * 112.51850 * 60.62449 * 9 8 4 36 36 H 1.10478 * 108.35490 * 178.26682 * 9 8 4 37 37 H 1.09437 * 109.09115 * 181.56977 * 10 9 8 38 38 H 1.08685 * 110.32724 * 61.39473 * 10 9 8 39 39 H 1.09031 * 109.61493 * 292.14328 * 11 10 9 40 40 H 1.09138 * 109.34910 * 172.42150 * 11 10 9 41 41 H 0.97003 * 120.00598 * 180.02562 * 18 17 15 42 42 H 1.09109 * 109.51650 * 294.14153 * 23 12 11 43 43 H 1.08768 * 109.93825 * 173.61764 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9962 1.3318 1.1343 5 6 2.2310 1.4398 2.4018 6 6 2.3824 2.8920 2.9027 7 6 3.0720 3.6298 1.7251 8 6 3.9052 2.4874 1.0991 9 6 4.3735 2.8660 -0.2918 10 6 5.2079 1.7417 -0.9093 11 6 6.4261 1.4557 -0.0265 12 7 5.9774 1.2201 1.3508 13 6 6.3536 0.1055 2.0120 14 8 6.9861 -0.7597 1.4354 15 6 6.0009 -0.0630 3.4226 16 1 5.3713 0.6651 3.9125 17 6 6.4799 -1.1682 4.1370 18 7 7.3203 -1.9956 3.5744 19 14 5.9173 -1.4597 5.8943 20 1 4.6312 -2.2022 5.8855 21 1 6.9428 -2.2541 6.6171 22 1 5.7304 -0.1542 6.5771 23 6 5.1182 2.2186 1.9975 24 1 -0.5400 0.9354 0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 1.1800 1.2066 2.2192 30 1 2.6365 0.7391 3.1354 31 1 1.4087 3.3384 3.1205 32 1 3.0138 2.9288 3.7958 33 1 3.7188 4.4256 2.0852 34 1 2.3378 4.0059 1.0162 35 1 3.5540 3.1368 -0.9461 36 1 5.0208 3.7576 -0.2103 37 1 5.5541 2.0550 -1.8990 38 1 4.6117 0.8380 -1.0051 39 1 7.1081 2.3058 -0.0572 40 1 6.9413 0.5680 -0.3976 41 1 7.6518 -2.7613 4.0690 42 1 5.6761 3.1464 2.1334 43 1 4.7826 1.8490 2.9638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096071467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:07 Heat of formation + Delta-G solvation = -27.033225 kcal Electronic energy + Delta-G solvation = -23570.143084 eV Core-core repulsion = 20421.759677 eV Total energy + Delta-G solvation = -3148.383407 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53806 -39.18882 -36.73670 -35.32769 -34.54903 -33.37082 -31.49271 -31.02164 -28.45885 -27.27034 -25.87807 -25.39259 -23.03813 -21.85766 -20.96308 -20.57044 -19.63532 -18.33392 -17.76900 -16.81119 -16.63028 -16.33722 -15.89760 -15.77522 -15.25443 -15.03194 -14.70606 -14.32602 -14.13655 -13.77985 -13.73867 -13.43225 -13.29507 -13.07778 -12.97226 -12.72546 -12.51160 -12.47390 -12.20222 -12.06797 -12.01062 -11.79224 -11.66089 -11.47592 -11.27569 -11.12566 -10.88159 -10.25767 -9.68860 -9.14484 -8.80861 -8.24637 -6.73756 1.37532 1.37704 1.40579 1.53282 2.25382 2.52899 2.94245 3.17128 3.65288 3.74551 3.85255 3.91990 4.11896 4.16866 4.22904 4.26837 4.30621 4.38565 4.52315 4.60191 4.67760 4.72668 4.76602 4.86847 4.90354 4.97383 5.00397 5.02719 5.07709 5.11853 5.18002 5.19933 5.28521 5.39178 5.46176 5.49115 5.73224 5.81004 5.88707 6.19146 6.27372 6.46238 6.56301 6.94635 7.55869 8.57003 8.75848 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.007166 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.510578 B = 3906.159252 C = 4441.323229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.157 4.157 3 C 0.081 3.919 4 N -0.523 5.523 5 C 0.039 3.961 6 C -0.140 4.140 7 C -0.135 4.135 8 C 0.092 3.908 9 C -0.099 4.099 10 C -0.115 4.115 11 C 0.116 3.884 12 N -0.630 5.630 13 C 0.551 3.449 14 O -0.641 6.641 15 C -0.557 4.557 16 H 0.086 0.914 17 C 0.030 3.970 18 N -0.827 5.827 19 Si 0.987 3.013 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.246 1.246 23 C 0.141 3.859 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.039 0.961 41 H 0.271 0.729 42 H 0.057 0.943 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.218 13.542 -3.770 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.176 4.176 3 C -0.047 4.047 4 N -0.246 5.246 5 C -0.089 4.089 6 C -0.179 4.179 7 C -0.174 4.174 8 C 0.001 3.999 9 C -0.137 4.137 10 C -0.154 4.154 11 C -0.008 4.008 12 N -0.365 5.365 13 C 0.357 3.643 14 O -0.529 6.529 15 C -0.594 4.594 16 H 0.104 0.896 17 C -0.184 4.184 18 N -0.457 5.457 19 Si 0.807 3.193 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.169 1.169 23 C 0.017 3.983 24 H 0.130 0.870 25 H 0.122 0.878 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.429 12.463 -4.125 18.780 hybrid contribution -0.095 -0.235 0.662 0.709 sum -13.524 12.228 -3.463 18.558 Atomic orbital electron populations 1.23943 0.94924 1.02745 1.00133 1.22866 0.96211 0.98235 1.00273 1.21317 0.94026 0.94473 0.94835 1.63712 1.16687 1.42111 1.02119 1.23098 0.97469 0.96704 0.91675 1.22893 1.01784 0.94688 0.98532 1.23066 0.99147 0.97614 0.97576 1.21867 0.92966 0.88902 0.96140 1.21248 1.00429 0.97881 0.94131 1.21722 0.96259 0.98861 0.98537 1.21204 0.96527 0.99302 0.83724 1.47690 1.53031 1.22330 1.13412 1.18544 0.78135 0.79679 0.87959 1.90517 1.47460 1.44193 1.70719 1.21346 1.33271 1.10219 0.94529 0.89563 1.26914 0.92758 0.94259 1.04492 1.70189 1.24946 1.11591 1.38985 0.85195 0.78475 0.79695 0.75954 1.18965 1.19880 1.16886 1.21542 0.89612 0.90671 0.96502 0.87004 0.87805 0.89861 0.92802 0.90247 0.90956 0.93476 0.89363 0.91734 0.89444 0.89621 0.89506 0.90394 0.89596 0.93725 0.92527 0.94189 0.91907 0.92508 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 14.12 67.78 0.96 -2.79 16 2 C -0.16 -4.22 8.78 25.65 0.23 -4.00 16 3 C 0.08 2.08 4.31 85.56 0.37 2.45 16 4 N -0.52 -16.55 4.77 -842.23 -4.02 -20.56 16 5 C 0.04 1.11 5.85 86.46 0.51 1.62 16 6 C -0.14 -3.15 6.30 31.78 0.20 -2.95 16 7 C -0.13 -2.80 5.59 31.88 0.18 -2.62 16 8 C 0.09 2.62 0.44 3.69 0.00 2.62 16 9 C -0.10 -2.46 3.82 30.13 0.12 -2.34 16 10 C -0.12 -3.61 5.73 30.65 0.18 -3.43 16 11 C 0.12 4.79 6.45 86.38 0.56 5.35 16 12 N -0.63 -29.91 2.98 -824.38 -2.46 -32.37 16 13 C 0.55 33.47 7.61 86.33 0.66 34.13 16 14 O -0.64 -45.19 14.47 -4.34 -0.06 -45.26 16 15 C -0.56 -32.58 8.86 24.83 0.22 -32.36 16 16 H 0.09 4.58 5.71 -2.91 -0.02 4.56 16 17 C 0.03 1.73 5.49 85.30 0.47 2.20 16 18 N -0.83 -52.66 11.87 21.83 0.26 -52.40 16 19 Si 0.99 42.55 29.56 68.60 2.03 44.58 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 23 C 0.14 5.24 4.88 86.44 0.42 5.66 16 24 H 0.11 1.87 7.84 -2.91 -0.02 1.85 16 25 H 0.10 1.97 8.06 -2.91 -0.02 1.95 16 26 H 0.08 2.72 8.06 -2.91 -0.02 2.69 16 27 H 0.05 1.14 7.27 -2.38 -0.02 1.12 16 28 H 0.08 2.07 5.35 -2.39 -0.01 2.06 16 29 H 0.07 1.86 6.81 -2.29 -0.02 1.84 16 30 H 0.05 1.68 8.16 -2.25 -0.02 1.66 16 31 H 0.09 1.55 8.17 -2.22 -0.02 1.53 16 32 H 0.06 1.56 7.82 -2.16 -0.02 1.54 16 33 H 0.09 1.63 7.98 -2.55 -0.02 1.61 16 34 H 0.09 1.47 7.82 -2.51 -0.02 1.45 16 35 H 0.09 1.71 7.00 -2.75 -0.02 1.69 16 36 H 0.08 1.69 8.26 -1.59 -0.01 1.68 16 37 H 0.09 2.16 8.18 -2.15 -0.02 2.14 16 38 H 0.04 1.62 7.05 -2.55 -0.02 1.60 16 39 H 0.06 2.07 8.14 -2.37 -0.02 2.05 16 40 H 0.04 1.96 6.98 -2.31 -0.02 1.94 16 41 H 0.27 15.71 8.29 -92.71 -0.77 14.94 16 42 H 0.06 1.90 8.08 -2.33 -0.02 1.88 16 43 H 0.08 3.08 4.06 -2.51 -0.01 3.07 16 Total: -1.00 -79.41 328.31 1.80 -77.61 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.99 Total: 24.87 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.05 Total: 3.54 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -6.21 Total: -105.33 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.06 Total: -45.26 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -79.41 1.80 -77.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096071467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.576 kcal (2) G-P(sol) polarization free energy of solvation -79.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds