Wall clock time and date at job start Tue Mar 31 2020 00:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47562 * 2 1 4 4 N 1.46498 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.36486 * 124.77744 * 269.69930 * 4 3 2 6 6 C 1.50702 * 125.42142 * 0.02562 * 5 4 3 7 7 C 1.34361 * 109.16446 * 179.81758 * 5 4 3 8 8 C 1.46907 * 106.35375 * 0.42672 * 7 5 4 9 9 C 1.46446 * 127.06199 * 179.75598 * 8 7 5 10 10 O 1.21353 * 119.99624 * 179.97438 * 9 8 7 11 11 C 1.50701 * 120.00307 * 359.97438 * 9 8 7 12 12 N 1.46501 * 109.47241 * 180.02562 * 11 9 8 13 13 C 1.46498 * 120.00194 * 89.99837 * 12 11 9 14 14 C 1.36939 * 119.99728 * 270.00024 * 12 11 9 15 15 H 1.07996 * 119.99725 * 142.05420 * 14 12 11 16 16 C 1.38811 * 119.99753 * 322.04470 * 14 12 11 17 17 N 1.31624 * 119.99439 * 157.03893 * 16 14 12 18 18 Si 1.86792 * 120.00363 * 337.04238 * 16 14 12 19 19 H 1.48503 * 109.47207 * 95.68224 * 18 16 14 20 20 H 1.48495 * 109.47208 * 215.68501 * 18 16 14 21 21 H 1.48501 * 109.46906 * 335.68381 * 18 16 14 22 22 C 1.34487 * 124.77451 * 90.00322 * 4 3 2 23 23 C 1.50706 * 125.91979 * 359.97438 * 22 4 3 24 24 H 1.09005 * 109.47011 * 300.00219 * 1 2 3 25 25 H 1.09005 * 109.47025 * 59.99709 * 1 2 3 26 26 H 1.08994 * 109.47548 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47011 * 239.99780 * 2 1 3 28 28 H 1.09005 * 109.47025 * 120.00291 * 2 1 3 29 29 H 1.08996 * 109.47158 * 300.00177 * 3 2 1 30 30 H 1.09008 * 109.46868 * 60.00309 * 3 2 1 31 31 H 1.08997 * 109.47239 * 89.99757 * 6 5 4 32 32 H 1.08998 * 109.47201 * 209.99884 * 6 5 4 33 33 H 1.09001 * 109.46870 * 329.99450 * 6 5 4 34 34 H 1.07997 * 126.82709 * 180.16154 * 7 5 4 35 35 H 1.08999 * 109.46556 * 299.99856 * 11 9 8 36 36 H 1.08993 * 109.46892 * 59.99606 * 11 9 8 37 37 H 1.09003 * 109.47152 * 85.86791 * 13 12 11 38 38 H 1.08996 * 109.47178 * 205.87429 * 13 12 11 39 39 H 1.09009 * 109.46788 * 325.87087 * 13 12 11 40 40 H 0.97000 * 119.99656 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.46992 * 90.00395 * 23 22 4 42 42 H 1.08996 * 109.46966 * 210.00121 * 23 22 4 43 43 H 1.09000 * 109.46935 * 329.99660 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2831 1.4484 1.1220 6 6 3.7720 1.4555 2.5397 7 6 5.5773 1.4423 0.7609 8 6 5.5969 1.4422 -0.7080 9 6 6.7772 1.4416 -1.5749 10 8 6.6441 1.4411 -2.7811 11 6 8.1571 1.4417 -0.9691 12 7 9.1595 1.4416 -2.0375 13 6 9.6606 2.7103 -2.5718 14 6 9.6280 0.2557 -2.5368 15 1 9.8303 0.1568 -3.5930 16 6 9.8429 -0.8192 -1.6852 17 7 9.8478 -2.0460 -2.1623 18 14 10.1251 -0.5249 0.1377 19 1 8.8413 -0.6774 0.8684 20 1 11.1079 -1.5120 0.6522 21 1 10.6505 0.8490 0.3417 22 6 4.2726 1.4422 -1.1037 23 6 3.7749 1.4416 -2.5263 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8901 31 1 3.6490 0.4296 2.8867 32 1 4.4858 1.9728 3.1807 33 1 2.8114 1.9693 2.5770 34 1 6.4331 1.4423 1.4197 35 1 8.2833 2.3319 -0.3530 36 1 8.2831 0.5520 -0.3522 37 1 10.4886 3.0621 -1.9563 38 1 10.0058 2.5626 -3.5951 39 1 8.8603 3.4503 -2.5616 40 1 9.9984 -2.7971 -1.5673 41 1 3.6547 2.4690 -2.8696 42 1 4.4951 0.9277 -3.1629 43 1 2.8151 0.9274 -2.5751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103472725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:11 Heat of formation + Delta-G solvation = 26.251279 kcal Electronic energy + Delta-G solvation = -22252.289256 eV Core-core repulsion = 19106.216439 eV Total energy + Delta-G solvation = -3146.072817 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25073 -38.07276 -35.26325 -35.00869 -32.53253 -31.48473 -31.23739 -29.15836 -28.13351 -26.18672 -25.62218 -24.49801 -22.36560 -21.64649 -20.84108 -19.26754 -17.95157 -16.70824 -16.19781 -15.63226 -15.35428 -15.18275 -14.57497 -14.01643 -13.85396 -13.63706 -13.57010 -13.27750 -13.12095 -12.79229 -12.70925 -12.46356 -12.34885 -12.30399 -12.22498 -12.11193 -11.96422 -11.70682 -11.31154 -11.18664 -11.16301 -11.04783 -10.63587 -10.38988 -9.98730 -9.51627 -8.79755 -8.36339 -8.31613 -7.69766 -6.67274 -5.88810 -3.27883 1.99970 2.55712 2.87720 3.35626 3.51227 3.57521 3.96255 4.38531 4.51225 4.60638 4.67370 4.84932 4.91863 4.99122 5.02030 5.10921 5.20767 5.30899 5.34633 5.44675 5.48725 5.51078 5.62050 5.66454 5.73296 5.74209 5.86466 5.93075 6.11675 6.18093 6.22708 6.31526 6.43059 6.43498 6.70560 6.81331 6.86797 7.11319 7.36110 7.44779 8.13753 8.51585 8.71319 9.10258 9.81492 10.22497 11.27369 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.005019 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.946545 B = 5577.148476 C = 5882.680590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.099 3.901 4 N -0.438 5.438 5 C -0.004 4.004 6 C -0.079 4.079 7 C -0.152 4.152 8 C -0.249 4.249 9 C 0.397 3.603 10 O -0.453 6.453 11 C 0.101 3.899 12 N -0.597 5.597 13 C 0.130 3.870 14 C -0.258 4.258 15 H 0.078 0.922 16 C 0.032 3.968 17 N -0.899 5.899 18 Si 0.867 3.133 19 H -0.282 1.282 20 H -0.299 1.299 21 H -0.267 1.267 22 C 0.091 3.909 23 C -0.091 4.091 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.143 0.857 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.008 0.992 38 H 0.046 0.954 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.002 8.145 8.973 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.023 4.023 4 N -0.115 5.115 5 C -0.111 4.111 6 C -0.137 4.137 7 C -0.176 4.176 8 C -0.257 4.257 9 C 0.272 3.728 10 O -0.328 6.328 11 C -0.026 4.026 12 N -0.320 5.320 13 C -0.015 4.015 14 C -0.387 4.387 15 H 0.096 0.904 16 C -0.168 4.168 17 N -0.541 5.541 18 Si 0.697 3.303 19 H -0.210 1.210 20 H -0.227 1.227 21 H -0.191 1.191 22 C -0.024 4.024 23 C -0.148 4.148 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.026 0.974 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.334 7.990 8.364 22.530 hybrid contribution 0.069 -0.129 1.280 1.288 sum -19.265 7.861 9.643 22.933 Atomic orbital electron populations 1.21697 0.94519 1.02425 1.02004 1.21924 0.96480 0.95942 1.03691 1.21914 0.77889 0.98375 1.04097 1.43518 1.05686 1.57075 1.05248 1.20063 0.90536 1.12181 0.88325 1.20276 1.00971 1.02307 0.90101 1.21861 0.95010 1.07013 0.93696 1.21598 0.93113 1.16828 0.94173 1.22990 0.90360 0.71017 0.88456 1.90394 1.88801 1.36701 1.16902 1.21529 0.87337 1.01185 0.92555 1.43745 1.42143 1.03095 1.42970 1.21040 0.95616 0.87152 0.97673 1.18810 1.39163 0.87421 0.93332 0.90425 1.25466 0.98456 0.95186 0.97663 1.69906 1.50794 0.97775 1.35591 0.87035 0.77577 0.78153 0.87566 1.21010 1.22671 1.19121 1.20844 0.89989 1.02794 0.88812 1.20523 1.01477 1.02861 0.89915 0.92481 0.92380 0.91997 0.90983 0.91107 0.89360 0.89361 0.91396 0.90291 0.92254 0.83919 0.91301 0.90028 0.97413 0.93503 0.95575 0.92851 0.90919 0.88037 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.14 -1.21 6.26 -26.73 -0.17 -1.38 16 3 C 0.10 0.90 5.36 -4.04 -0.02 0.88 16 4 N -0.44 -5.87 2.68 -107.62 -0.29 -6.16 16 5 C 0.00 -0.06 6.84 -81.89 -0.56 -0.62 16 6 C -0.08 -0.75 10.05 36.01 0.36 -0.39 16 7 C -0.15 -2.54 10.58 -37.44 -0.40 -2.94 16 8 C -0.25 -4.82 6.29 -103.09 -0.65 -5.47 16 9 C 0.40 9.10 7.19 -31.00 -0.22 8.88 16 10 O -0.45 -11.45 14.97 5.49 0.08 -11.37 16 11 C 0.10 2.39 4.57 -5.19 -0.02 2.36 16 12 N -0.60 -15.64 1.96 -182.50 -0.36 -16.00 16 13 C 0.13 2.89 10.70 59.85 0.64 3.53 16 14 C -0.26 -7.79 9.88 -15.06 -0.15 -7.94 16 15 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 16 C 0.03 0.97 5.29 -17.43 -0.09 0.88 16 17 N -0.90 -28.67 13.97 55.49 0.78 -27.90 16 18 Si 0.87 22.56 25.10 -169.99 -4.27 18.30 16 19 H -0.28 -7.02 6.68 56.52 0.38 -6.64 16 20 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.09 1.50 6.94 -81.43 -0.56 0.93 16 23 C -0.09 -1.31 9.28 36.01 0.33 -0.98 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.71 7.49 -51.93 -0.39 0.32 16 30 H 0.09 0.64 6.87 -51.92 -0.36 0.28 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.45 6.91 -51.93 -0.36 0.09 16 34 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.07 1.41 8.07 -51.93 -0.42 0.99 16 36 H 0.08 2.05 3.38 -51.93 -0.18 1.88 16 37 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.05 1.02 8.01 -51.93 -0.42 0.61 16 39 H 0.03 0.52 8.10 -51.92 -0.42 0.10 16 40 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.77 6.52 -51.93 -0.34 1.43 16 43 H 0.06 0.67 7.58 -51.93 -0.39 0.28 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -35.67 349.33 -7.01 -42.68 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.08 Total: -2.01 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.14 Total: -2.80 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.13 Total: -50.06 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.27 Total: 18.30 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.67 -7.01 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.928 kcal (2) G-P(sol) polarization free energy of solvation -35.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds