Wall clock time and date at job start Tue Mar 31 2020 00:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47562 * 2 1 4 4 N 1.46498 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.36486 * 124.77744 * 269.69930 * 4 3 2 6 6 C 1.50702 * 125.42142 * 0.02562 * 5 4 3 7 7 C 1.34361 * 109.16446 * 179.81758 * 5 4 3 8 8 C 1.46907 * 106.35375 * 0.42672 * 7 5 4 9 9 C 1.46446 * 127.06199 * 179.75598 * 8 7 5 10 10 O 1.21353 * 119.99624 * 179.97438 * 9 8 7 11 11 C 1.50701 * 120.00307 * 359.97438 * 9 8 7 12 12 N 1.46501 * 109.47241 * 180.02562 * 11 9 8 13 13 C 1.46498 * 120.00194 * 89.99837 * 12 11 9 14 14 C 1.36939 * 119.99728 * 270.00024 * 12 11 9 15 15 H 1.07996 * 119.99725 * 142.05420 * 14 12 11 16 16 C 1.38811 * 119.99753 * 322.04470 * 14 12 11 17 17 N 1.31624 * 119.99439 * 157.03893 * 16 14 12 18 18 Si 1.86792 * 120.00363 * 337.04238 * 16 14 12 19 19 H 1.48503 * 109.47207 * 95.68224 * 18 16 14 20 20 H 1.48495 * 109.47208 * 215.68501 * 18 16 14 21 21 H 1.48501 * 109.46906 * 335.68381 * 18 16 14 22 22 C 1.34487 * 124.77451 * 90.00322 * 4 3 2 23 23 C 1.50706 * 125.91979 * 359.97438 * 22 4 3 24 24 H 1.09005 * 109.47011 * 300.00219 * 1 2 3 25 25 H 1.09005 * 109.47025 * 59.99709 * 1 2 3 26 26 H 1.08994 * 109.47548 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47011 * 239.99780 * 2 1 3 28 28 H 1.09005 * 109.47025 * 120.00291 * 2 1 3 29 29 H 1.08996 * 109.47158 * 300.00177 * 3 2 1 30 30 H 1.09008 * 109.46868 * 60.00309 * 3 2 1 31 31 H 1.08997 * 109.47239 * 89.99757 * 6 5 4 32 32 H 1.08998 * 109.47201 * 209.99884 * 6 5 4 33 33 H 1.09001 * 109.46870 * 329.99450 * 6 5 4 34 34 H 1.07997 * 126.82709 * 180.16154 * 7 5 4 35 35 H 1.08999 * 109.46556 * 299.99856 * 11 9 8 36 36 H 1.08993 * 109.46892 * 59.99606 * 11 9 8 37 37 H 1.09003 * 109.47152 * 85.86791 * 13 12 11 38 38 H 1.08996 * 109.47178 * 205.87429 * 13 12 11 39 39 H 1.09009 * 109.46788 * 325.87087 * 13 12 11 40 40 H 0.97000 * 119.99656 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.46992 * 90.00395 * 23 22 4 42 42 H 1.08996 * 109.46966 * 210.00121 * 23 22 4 43 43 H 1.09000 * 109.46935 * 329.99660 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2831 1.4484 1.1220 6 6 3.7720 1.4555 2.5397 7 6 5.5773 1.4423 0.7609 8 6 5.5969 1.4422 -0.7080 9 6 6.7772 1.4416 -1.5749 10 8 6.6441 1.4411 -2.7811 11 6 8.1571 1.4417 -0.9691 12 7 9.1595 1.4416 -2.0375 13 6 9.6606 2.7103 -2.5718 14 6 9.6280 0.2557 -2.5368 15 1 9.8303 0.1568 -3.5930 16 6 9.8429 -0.8192 -1.6852 17 7 9.8478 -2.0460 -2.1623 18 14 10.1251 -0.5249 0.1377 19 1 8.8413 -0.6774 0.8684 20 1 11.1079 -1.5120 0.6522 21 1 10.6505 0.8490 0.3417 22 6 4.2726 1.4422 -1.1037 23 6 3.7749 1.4416 -2.5263 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8901 31 1 3.6490 0.4296 2.8867 32 1 4.4858 1.9728 3.1807 33 1 2.8114 1.9693 2.5770 34 1 6.4331 1.4423 1.4197 35 1 8.2833 2.3319 -0.3530 36 1 8.2831 0.5520 -0.3522 37 1 10.4886 3.0621 -1.9563 38 1 10.0058 2.5626 -3.5951 39 1 8.8603 3.4503 -2.5616 40 1 9.9984 -2.7971 -1.5673 41 1 3.6547 2.4690 -2.8696 42 1 4.4951 0.9277 -3.1629 43 1 2.8151 0.9274 -2.5751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103472725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:10 Heat of formation + Delta-G solvation = 4.390177 kcal Electronic energy + Delta-G solvation = -22253.237225 eV Core-core repulsion = 19106.216439 eV Total energy + Delta-G solvation = -3147.020786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.39856 -39.82507 -37.05694 -36.00092 -33.76098 -33.57745 -32.32729 -30.28003 -29.61268 -28.03420 -26.86434 -25.71297 -23.69136 -22.76641 -22.39215 -20.65908 -19.27936 -18.72019 -17.63512 -17.16084 -16.50944 -16.36638 -15.94676 -15.79946 -15.40267 -15.07117 -14.70993 -14.56140 -14.41520 -14.14677 -14.11737 -13.97152 -13.62528 -13.49136 -13.22935 -13.11846 -12.98856 -12.93573 -12.74241 -12.64114 -12.36865 -12.24602 -12.07559 -12.03171 -11.74323 -11.64471 -10.77098 -10.42609 -9.52345 -8.90525 -8.76597 -8.21798 -5.60570 0.54156 1.28793 1.37668 1.41084 1.53849 1.86712 2.39474 2.41900 2.93748 3.39734 3.59603 3.71217 3.79834 3.89619 3.95608 4.14790 4.27006 4.33829 4.44403 4.47295 4.52214 4.52859 4.61395 4.65206 4.72159 4.76746 4.81336 4.83428 4.97168 4.99171 5.02229 5.06318 5.10662 5.12783 5.15972 5.35421 5.39915 5.85840 5.90384 6.13843 6.16486 6.39752 6.85901 7.08351 7.58319 8.00300 8.98693 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.005019 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.946545 B = 5577.148476 C = 5882.680590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.091 3.909 4 N -0.429 5.429 5 C 0.013 3.987 6 C -0.078 4.078 7 C -0.181 4.181 8 C -0.296 4.296 9 C 0.392 3.608 10 O -0.496 6.496 11 C 0.096 3.904 12 N -0.612 5.612 13 C 0.129 3.871 14 C -0.263 4.263 15 H 0.029 0.971 16 C -0.025 4.025 17 N -0.949 5.949 18 Si 0.942 3.058 19 H -0.264 1.264 20 H -0.299 1.299 21 H -0.249 1.249 22 C 0.093 3.907 23 C -0.086 4.086 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.264 0.736 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.797 9.794 12.425 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C -0.029 4.029 4 N -0.105 5.105 5 C -0.094 4.094 6 C -0.135 4.135 7 C -0.204 4.204 8 C -0.305 4.305 9 C 0.271 3.729 10 O -0.375 6.375 11 C -0.030 4.030 12 N -0.336 5.336 13 C -0.015 4.015 14 C -0.393 4.393 15 H 0.046 0.954 16 C -0.221 4.221 17 N -0.593 5.593 18 Si 0.768 3.232 19 H -0.191 1.191 20 H -0.227 1.227 21 H -0.173 1.173 22 C -0.025 4.025 23 C -0.144 4.144 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.166 0.834 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.161 9.679 11.851 26.930 hybrid contribution 0.794 -0.626 0.144 1.021 sum -21.367 9.053 11.996 26.123 Atomic orbital electron populations 1.21666 0.92424 1.02839 1.03177 1.21880 0.98184 0.95197 1.02414 1.22335 0.74926 0.99233 1.06383 1.43827 1.07444 1.54996 1.04202 1.20700 0.89752 1.08795 0.90201 1.20442 1.02509 1.03567 0.86983 1.22024 0.96852 1.09157 0.92372 1.21383 0.93031 1.20741 0.95326 1.23059 0.91514 0.69981 0.88314 1.90375 1.89360 1.39338 1.18444 1.21648 0.87351 1.02018 0.91975 1.43862 1.43259 1.02877 1.43596 1.21132 0.96933 0.86032 0.97383 1.18633 1.39512 0.89519 0.91590 0.95352 1.26171 0.98224 0.94449 1.03236 1.70050 1.52615 0.98886 1.37768 0.85844 0.77996 0.78655 0.80665 1.19066 1.22703 1.17265 1.20985 0.89739 1.01495 0.90286 1.20476 1.01788 1.03632 0.88460 0.90861 0.91658 0.92042 0.93071 0.91691 0.87906 0.86360 0.90346 0.89065 0.89565 0.83411 0.87844 0.91405 0.95160 0.94495 0.93549 0.92694 0.89533 0.91671 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.14 -1.93 6.26 30.59 0.19 -1.74 16 3 C 0.09 1.28 5.36 86.38 0.46 1.74 16 4 N -0.43 -10.26 2.68 -494.39 -1.32 -11.59 16 5 C 0.01 0.33 6.84 40.95 0.28 0.61 16 6 C -0.08 -1.11 10.05 71.24 0.72 -0.40 16 7 C -0.18 -5.76 10.58 23.66 0.25 -5.51 16 8 C -0.30 -11.46 6.29 -18.87 -0.12 -11.58 16 9 C 0.39 18.44 7.19 27.83 0.20 18.64 16 10 O -0.50 -26.36 14.97 -3.25 -0.05 -26.41 16 11 C 0.10 4.53 4.57 85.63 0.39 4.92 16 12 N -0.61 -32.62 1.96 -731.31 -1.43 -34.05 16 13 C 0.13 5.74 10.70 127.77 1.37 7.10 16 14 C -0.26 -16.56 9.88 84.03 0.83 -15.73 16 15 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 16 C -0.02 -1.54 5.29 84.86 0.45 -1.09 16 17 N -0.95 -63.03 13.97 21.65 0.30 -62.73 16 18 Si 0.94 47.28 25.10 68.60 1.72 49.00 16 19 H -0.26 -12.38 6.68 99.48 0.66 -11.71 16 20 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 21 H -0.25 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.09 2.97 6.94 42.15 0.29 3.26 16 23 C -0.09 -2.46 9.28 71.24 0.66 -1.80 16 24 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 25 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.10 1.21 7.49 -2.39 -0.02 1.19 16 30 H 0.12 1.03 6.87 -2.38 -0.02 1.01 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 0.80 6.91 -2.39 -0.02 0.79 16 34 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.10 4.06 8.07 -2.39 -0.02 4.04 16 36 H 0.07 3.38 3.38 -2.39 -0.01 3.37 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 1.66 8.01 -2.39 -0.02 1.64 16 39 H 0.05 1.84 8.10 -2.38 -0.02 1.82 16 40 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.06 2.38 6.52 -2.39 -0.02 2.37 16 43 H 0.09 1.92 7.58 -2.39 -0.02 1.90 16 Total: -1.00 -82.73 349.33 6.84 -75.89 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.94 Total: 11.99 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 6.69 Total: -2.10 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -2.45 Total: -108.37 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.72 Total: 49.00 kcal Total: -82.73 6.84 -75.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.279 kcal (2) G-P(sol) polarization free energy of solvation -82.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds