Wall clock time and date at job start Tue Mar 31 2020 01:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47041 * 80.21297 * 3 2 1 5 5 C 1.34777 * 119.99786 * 269.99632 * 4 3 2 6 6 O 1.21589 * 119.99334 * 185.16360 * 5 4 3 7 7 N 1.34768 * 120.00153 * 5.16958 * 5 4 3 8 8 C 1.46502 * 120.00203 * 179.97438 * 7 5 4 9 9 C 1.52991 * 109.47518 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47481 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47438 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00197 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00180 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99600 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99923 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47230 * 60.00168 * 15 13 11 17 17 H 1.48500 * 109.46815 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47377 * 299.99579 * 15 13 11 19 19 C 1.46496 * 119.99849 * 90.00220 * 4 3 2 20 20 C 1.54272 * 110.03413 * 297.84341 * 19 4 3 21 21 C 1.54959 * 104.16119 * 95.75350 * 20 19 4 22 22 C 1.54890 * 102.77561 * 37.88968 * 21 20 19 23 23 C 1.53878 * 110.03440 * 55.06085 * 19 4 3 24 24 H 4.40642 * 5.51409 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.46707 * 320.21019 * 3 2 1 26 26 H 1.09000 * 109.46433 * 200.21534 * 3 2 1 27 27 H 0.97006 * 120.00047 * 359.97438 * 7 5 4 28 28 H 1.09005 * 109.46922 * 300.00173 * 8 7 5 29 29 H 1.09006 * 109.46785 * 59.99576 * 8 7 5 30 30 H 1.09005 * 109.47376 * 300.00152 * 9 8 7 31 31 H 1.09006 * 109.47229 * 60.00105 * 9 8 7 32 32 H 1.09000 * 109.47206 * 300.00017 * 10 9 8 33 33 H 1.08994 * 109.47056 * 60.00145 * 10 9 8 34 34 H 0.97003 * 119.99332 * 179.97438 * 14 13 11 35 35 H 1.09001 * 110.01654 * 176.45020 * 19 4 3 36 36 H 1.09001 * 110.48760 * 214.40393 * 20 19 4 37 37 H 1.09001 * 110.48168 * 337.04542 * 20 19 4 38 38 H 1.08995 * 110.72327 * 279.58010 * 21 20 19 39 39 H 1.08995 * 110.92249 * 156.29307 * 21 20 19 40 40 H 1.09004 * 110.48876 * 203.39952 * 22 21 20 41 41 H 1.09002 * 110.59877 * 80.81951 * 22 21 20 42 42 H 1.09001 * 110.03401 * 359.94873 * 23 19 4 43 43 H 1.09001 * 110.02934 * 121.38419 * 23 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.2339 -1.3611 5 6 3.3597 -1.4920 -1.7887 6 8 3.8532 -1.6827 -2.8835 7 7 3.0379 -2.5386 -1.0030 8 6 3.2822 -3.9062 -1.4680 9 6 2.8312 -4.8983 -0.3943 10 6 3.0858 -6.3266 -0.8802 11 6 2.6410 -7.3038 0.1772 12 1 2.2193 -6.9424 1.1035 13 6 2.7733 -8.6593 -0.0373 14 7 3.2882 -9.0994 -1.1646 15 14 2.2226 -9.8706 1.2737 16 1 0.7726 -9.6891 1.5376 17 1 2.4707 -11.2568 0.8025 18 1 2.9873 -9.6289 2.5236 19 6 3.3782 0.8991 -2.2573 20 6 2.0623 1.6621 -2.5144 21 6 2.0887 2.8208 -1.4859 22 6 3.5818 3.2327 -1.4723 23 6 4.3440 1.8971 -1.5946 24 1 -1.0499 0.0002 -0.0001 25 1 3.0097 -0.7889 0.6577 26 1 3.0089 0.9652 0.3551 27 1 2.6445 -2.3864 -0.1295 28 1 2.7213 -4.0835 -2.3857 29 1 4.3467 -4.0395 -1.6614 30 1 3.3924 -4.7208 0.5232 31 1 1.7668 -4.7651 -0.2006 32 1 2.5242 -6.5038 -1.7975 33 1 4.1500 -6.4601 -1.0742 34 1 3.3816 -10.0531 -1.3154 35 1 3.7954 0.5458 -3.2003 36 1 2.0414 2.0549 -3.5309 37 1 1.2044 1.0134 -2.3374 38 1 1.7758 2.4707 -0.5023 39 1 1.4625 3.6493 -1.8167 40 1 3.8319 3.7303 -0.5352 41 1 3.8086 3.8804 -2.3192 42 1 4.6307 1.5389 -0.6059 43 1 5.2297 2.0282 -2.2162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176382085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:31 Heat of formation + Delta-G solvation = 8.931015 kcal Electronic energy + Delta-G solvation = -21512.381490 eV Core-core repulsion = 18365.557610 eV Total energy + Delta-G solvation = -3146.823880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55213 -38.21469 -35.39886 -35.17260 -33.19714 -32.74603 -31.07510 -28.97487 -28.59321 -27.13919 -26.03203 -23.12621 -21.11387 -20.80131 -20.54058 -19.70426 -18.43894 -17.96068 -16.71895 -16.29730 -15.70415 -15.50165 -15.10713 -14.65528 -14.46217 -14.01524 -13.80284 -13.66048 -13.52942 -13.36268 -12.25851 -12.11004 -11.86504 -11.75790 -11.58945 -11.40675 -11.36704 -11.19340 -10.87364 -10.82827 -10.69952 -10.60552 -10.51894 -10.38939 -9.97216 -9.83749 -9.41688 -9.12012 -9.01608 -8.55632 -8.35447 -6.00225 -4.03298 2.24196 2.62685 3.04647 3.30012 3.32876 3.37572 3.39532 4.01361 4.18032 4.36638 4.43206 4.45911 4.64722 4.87892 5.12361 5.16741 5.23320 5.28419 5.34767 5.35397 5.40076 5.58520 5.63124 5.70649 5.73117 5.78173 5.83794 5.95262 6.04379 6.05601 6.21059 6.42394 6.56728 6.64595 6.83219 7.03021 7.04430 7.40341 7.65406 7.78740 7.98755 8.05979 8.39746 8.72805 9.03174 9.60629 11.11085 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033372 B = 0.003046 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.827543 B = 9190.246894 C = 9668.221115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.209 4.209 3 C 0.217 3.783 4 N -0.621 5.621 5 C 0.705 3.295 6 O -0.588 6.588 7 N -0.739 5.739 8 C 0.134 3.866 9 C -0.120 4.120 10 C 0.025 3.975 11 C -0.523 4.523 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.152 3.848 20 C -0.137 4.137 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.136 4.136 24 H 0.216 0.784 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.393 0.607 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 25.903 2.197 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.211 4.211 3 C 0.094 3.906 4 N -0.358 5.358 5 C 0.406 3.594 6 O -0.466 6.466 7 N -0.394 5.394 8 C 0.010 3.990 9 C -0.158 4.158 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.048 3.952 20 C -0.175 4.175 21 C -0.164 4.164 22 C -0.162 4.162 23 C -0.175 4.175 24 H 0.233 0.767 25 H 0.115 0.885 26 H 0.123 0.877 27 H 0.228 0.772 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.816 25.537 1.260 25.633 hybrid contribution -0.797 -0.702 1.176 1.585 sum -2.613 24.835 2.436 25.091 Atomic orbital electron populations 1.24959 0.95930 1.00318 0.98663 1.23569 0.94938 1.01036 1.01553 1.18324 0.83814 1.03764 0.84745 1.47233 1.69969 1.05047 1.13540 1.15966 0.78961 0.80256 0.84196 1.90905 1.50353 1.84080 1.21221 1.45545 1.67154 1.06107 1.20621 1.21528 1.01065 0.77867 0.98493 1.21886 1.00111 0.97097 0.96708 1.19015 0.97431 0.88067 0.96761 1.21170 1.41376 0.91097 1.02460 0.92725 1.25027 0.95310 0.98557 0.95555 1.69960 1.44807 1.14322 1.24194 0.86642 0.79144 0.80177 0.81931 1.20261 1.21271 1.20252 1.21601 0.94801 0.84853 0.93906 1.22802 0.98026 0.97280 0.99431 1.22573 0.96299 0.97878 0.99617 1.22374 0.95146 0.96875 1.01799 1.22585 0.98535 0.94750 1.01628 0.76700 0.88534 0.87743 0.77209 0.91958 0.91866 0.92811 0.92841 0.96261 0.96230 0.92875 0.87646 0.90819 0.90795 0.91362 0.91686 0.91646 0.91442 0.90944 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 19.17 29.55 0.57 -1.11 16 2 C -0.21 -2.09 10.72 -37.12 -0.40 -2.49 16 3 C 0.22 2.00 4.51 -6.83 -0.03 1.97 16 4 N -0.62 -7.46 2.32 -173.85 -0.40 -7.86 16 5 C 0.70 11.38 8.26 -86.92 -0.72 10.67 16 6 O -0.59 -11.81 15.70 5.29 0.08 -11.73 16 7 N -0.74 -11.49 5.40 -65.23 -0.35 -11.85 16 8 C 0.13 2.47 5.67 -4.05 -0.02 2.44 16 9 C -0.12 -2.41 5.27 -26.74 -0.14 -2.55 16 10 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 11 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.15 1.63 3.35 -66.81 -0.22 1.40 16 20 C -0.14 -1.26 5.88 -25.03 -0.15 -1.41 16 21 C -0.13 -0.92 6.36 -24.70 -0.16 -1.07 16 22 C -0.12 -0.82 6.83 -25.07 -0.17 -0.99 16 23 C -0.14 -1.11 5.97 -25.61 -0.15 -1.26 16 24 H 0.22 1.39 7.80 -54.09 -0.42 0.97 16 25 H 0.10 0.82 6.59 -51.93 -0.34 0.47 16 26 H 0.10 0.75 5.63 -51.93 -0.29 0.45 16 27 H 0.39 5.19 6.27 -40.82 -0.26 4.93 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.11 1.37 6.95 -51.93 -0.36 1.00 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.80 6.73 -51.93 -0.35 0.45 16 38 H 0.07 0.51 5.90 -51.93 -0.31 0.21 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.57 6.66 -51.93 -0.35 0.23 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -33.09 347.24 -8.74 -41.83 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.87 Total: 1.48 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.15 Total: -7.41 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.02 Total: -45.99 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.09 -8.74 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176382085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.758 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds