Wall clock time and date at job start Tue Mar 31 2020 01:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47041 * 80.21297 * 3 2 1 5 5 C 1.34777 * 119.99786 * 269.99632 * 4 3 2 6 6 O 1.21589 * 119.99334 * 185.16360 * 5 4 3 7 7 N 1.34768 * 120.00153 * 5.16958 * 5 4 3 8 8 C 1.46502 * 120.00203 * 179.97438 * 7 5 4 9 9 C 1.52991 * 109.47518 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47481 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47438 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00197 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00180 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99600 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99923 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47230 * 60.00168 * 15 13 11 17 17 H 1.48500 * 109.46815 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47377 * 299.99579 * 15 13 11 19 19 C 1.46496 * 119.99849 * 90.00220 * 4 3 2 20 20 C 1.54272 * 110.03413 * 297.84341 * 19 4 3 21 21 C 1.54959 * 104.16119 * 95.75350 * 20 19 4 22 22 C 1.54890 * 102.77561 * 37.88968 * 21 20 19 23 23 C 1.53878 * 110.03440 * 55.06085 * 19 4 3 24 24 H 4.40642 * 5.51409 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.46707 * 320.21019 * 3 2 1 26 26 H 1.09000 * 109.46433 * 200.21534 * 3 2 1 27 27 H 0.97006 * 120.00047 * 359.97438 * 7 5 4 28 28 H 1.09005 * 109.46922 * 300.00173 * 8 7 5 29 29 H 1.09006 * 109.46785 * 59.99576 * 8 7 5 30 30 H 1.09005 * 109.47376 * 300.00152 * 9 8 7 31 31 H 1.09006 * 109.47229 * 60.00105 * 9 8 7 32 32 H 1.09000 * 109.47206 * 300.00017 * 10 9 8 33 33 H 1.08994 * 109.47056 * 60.00145 * 10 9 8 34 34 H 0.97003 * 119.99332 * 179.97438 * 14 13 11 35 35 H 1.09001 * 110.01654 * 176.45020 * 19 4 3 36 36 H 1.09001 * 110.48760 * 214.40393 * 20 19 4 37 37 H 1.09001 * 110.48168 * 337.04542 * 20 19 4 38 38 H 1.08995 * 110.72327 * 279.58010 * 21 20 19 39 39 H 1.08995 * 110.92249 * 156.29307 * 21 20 19 40 40 H 1.09004 * 110.48876 * 203.39952 * 22 21 20 41 41 H 1.09002 * 110.59877 * 80.81951 * 22 21 20 42 42 H 1.09001 * 110.03401 * 359.94873 * 23 19 4 43 43 H 1.09001 * 110.02934 * 121.38419 * 23 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.2339 -1.3611 5 6 3.3597 -1.4920 -1.7887 6 8 3.8532 -1.6827 -2.8835 7 7 3.0379 -2.5386 -1.0030 8 6 3.2822 -3.9062 -1.4680 9 6 2.8312 -4.8983 -0.3943 10 6 3.0858 -6.3266 -0.8802 11 6 2.6410 -7.3038 0.1772 12 1 2.2193 -6.9424 1.1035 13 6 2.7733 -8.6593 -0.0373 14 7 3.2882 -9.0994 -1.1646 15 14 2.2226 -9.8706 1.2737 16 1 0.7726 -9.6891 1.5376 17 1 2.4707 -11.2568 0.8025 18 1 2.9873 -9.6289 2.5236 19 6 3.3782 0.8991 -2.2573 20 6 2.0623 1.6621 -2.5144 21 6 2.0887 2.8208 -1.4859 22 6 3.5818 3.2327 -1.4723 23 6 4.3440 1.8971 -1.5946 24 1 -1.0499 0.0002 -0.0001 25 1 3.0097 -0.7889 0.6577 26 1 3.0089 0.9652 0.3551 27 1 2.6445 -2.3864 -0.1295 28 1 2.7213 -4.0835 -2.3857 29 1 4.3467 -4.0395 -1.6614 30 1 3.3924 -4.7208 0.5232 31 1 1.7668 -4.7651 -0.2006 32 1 2.5242 -6.5038 -1.7975 33 1 4.1500 -6.4601 -1.0742 34 1 3.3816 -10.0531 -1.3154 35 1 3.7954 0.5458 -3.2003 36 1 2.0414 2.0549 -3.5309 37 1 1.2044 1.0134 -2.3374 38 1 1.7758 2.4707 -0.5023 39 1 1.4625 3.6493 -1.8167 40 1 3.8319 3.7303 -0.5352 41 1 3.8086 3.8804 -2.3192 42 1 4.6307 1.5389 -0.6059 43 1 5.2297 2.0282 -2.2162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176382085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:30 Heat of formation + Delta-G solvation = -10.526715 kcal Electronic energy + Delta-G solvation = -21513.225240 eV Core-core repulsion = 18365.557610 eV Total energy + Delta-G solvation = -3147.667631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64564 -39.20234 -36.97411 -36.14186 -35.07506 -33.59397 -32.85380 -29.65461 -29.44226 -28.60648 -27.27017 -24.92343 -22.33447 -22.13076 -21.46551 -20.63005 -19.58189 -18.81708 -18.45844 -17.64190 -16.90510 -16.55709 -16.31394 -16.07911 -15.89460 -15.24485 -14.91575 -14.72832 -14.35948 -14.18096 -14.07565 -13.74006 -13.56616 -12.85229 -12.71218 -12.55432 -12.50699 -12.40268 -12.04611 -11.98625 -11.95480 -11.68711 -11.59570 -11.39531 -11.32482 -11.25479 -11.18775 -10.97490 -10.54722 -10.30253 -9.69070 -8.19161 -6.30912 1.30663 1.41770 1.44979 1.52860 1.90605 2.03424 2.08534 2.42346 2.98375 3.14446 3.47639 3.64966 3.75391 4.00927 4.12770 4.15530 4.20607 4.42020 4.47624 4.53539 4.53920 4.57902 4.64171 4.81256 4.91485 4.93619 4.95665 5.07675 5.09062 5.12635 5.14644 5.27233 5.34919 5.43294 5.48492 5.50237 5.56283 5.70063 5.83719 5.89601 6.22363 6.68859 6.84962 6.89019 7.38550 7.47258 8.92903 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033372 B = 0.003046 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.827543 B = 9190.246894 C = 9668.221115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.233 4.233 3 C 0.212 3.788 4 N -0.611 5.611 5 C 0.700 3.300 6 O -0.634 6.634 7 N -0.730 5.730 8 C 0.149 3.851 9 C -0.099 4.099 10 C 0.026 3.974 11 C -0.542 4.542 12 H 0.067 0.933 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.144 3.856 20 C -0.133 4.133 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.132 4.132 24 H 0.238 0.762 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.407 0.593 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.064 0.936 32 H -0.009 1.009 33 H -0.007 1.007 34 H 0.263 0.737 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 27.627 4.643 28.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.235 4.235 3 C 0.091 3.909 4 N -0.346 5.346 5 C 0.401 3.599 6 O -0.516 6.516 7 N -0.386 5.386 8 C 0.024 3.976 9 C -0.137 4.137 10 C -0.012 4.012 11 C -0.580 4.580 12 H 0.085 0.915 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.211 1.211 18 H -0.189 1.189 19 C 0.041 3.959 20 C -0.172 4.172 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.170 4.170 24 H 0.255 0.745 25 H 0.124 0.876 26 H 0.148 0.852 27 H 0.245 0.755 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.009 0.991 33 H 0.012 0.988 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.829 27.324 3.756 27.725 hybrid contribution -0.508 -1.192 0.363 1.345 sum -3.336 26.132 4.118 26.664 Atomic orbital electron populations 1.25643 0.96784 0.99561 0.97551 1.23753 0.95381 1.01842 1.02507 1.18596 0.83817 1.05543 0.82971 1.47244 1.68851 1.03682 1.14834 1.16150 0.78702 0.81445 0.83554 1.90873 1.52420 1.85026 1.23275 1.45215 1.67281 1.04857 1.21220 1.21104 0.99864 0.79283 0.97337 1.21582 1.01019 0.93858 0.97282 1.18919 0.95205 0.91566 0.95532 1.21646 1.41224 0.91918 1.03225 0.91529 1.26033 0.95262 1.00877 0.97919 1.70112 1.46125 1.14824 1.26487 0.85459 0.79186 0.77173 0.78977 1.19034 1.21145 1.18937 1.21761 0.96340 0.84918 0.92890 1.22749 0.96296 0.97644 1.00491 1.22533 0.97087 0.97166 0.98827 1.22351 0.94096 0.95896 1.03047 1.22553 0.98017 0.94875 1.01555 0.74539 0.87594 0.85168 0.75531 0.93731 0.93163 0.91243 0.91734 0.99055 0.98814 0.92788 0.90730 0.90503 0.92487 0.91217 0.90538 0.89909 0.90776 0.90300 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 19.17 74.32 1.42 -1.50 16 2 C -0.23 -4.20 10.72 31.12 0.33 -3.87 16 3 C 0.21 3.50 4.51 84.57 0.38 3.88 16 4 N -0.61 -14.31 2.32 -822.19 -1.91 -16.22 16 5 C 0.70 22.88 8.26 179.06 1.48 24.36 16 6 O -0.63 -26.58 15.70 -4.00 -0.06 -26.64 16 7 N -0.73 -22.47 5.40 -478.54 -2.58 -25.06 16 8 C 0.15 5.60 5.67 86.38 0.49 6.09 16 9 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 10 C 0.03 1.35 4.97 29.85 0.15 1.50 16 11 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 12 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 13 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 14 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 15 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 19 C 0.14 3.04 3.35 45.72 0.15 3.20 16 20 C -0.13 -2.34 5.88 31.70 0.19 -2.16 16 21 C -0.12 -1.43 6.36 31.91 0.20 -1.22 16 22 C -0.12 -1.20 6.83 31.67 0.22 -0.98 16 23 C -0.13 -1.92 5.97 31.32 0.19 -1.74 16 24 H 0.24 2.46 7.80 -4.42 -0.03 2.43 16 25 H 0.11 1.55 6.59 -2.39 -0.02 1.53 16 26 H 0.13 1.48 5.63 -2.39 -0.01 1.46 16 27 H 0.41 10.16 6.27 -92.70 -0.58 9.58 16 28 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 31 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 32 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.07 2.04 6.95 -2.39 -0.02 2.02 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.20 6.73 -2.39 -0.02 1.19 16 38 H 0.07 0.84 5.90 -2.39 -0.01 0.83 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 1.06 6.66 -2.39 -0.02 1.04 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -73.16 347.24 4.22 -68.94 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.41 Total: 16.65 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 6.06 Total: -6.30 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -4.21 Total: -98.67 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -73.16 4.22 -68.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176382085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.408 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds