Wall clock time and date at job start Tue Mar 31 2020 00:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99877 * 2 1 4 4 C 1.50703 * 119.99944 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47196 * 95.00401 * 4 2 1 6 6 N 1.40072 * 126.03481 * 90.02115 * 5 4 2 7 7 C 1.30829 * 108.33954 * 179.97438 * 6 5 4 8 8 C 1.50698 * 125.86038 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46897 * 5.97792 * 8 7 6 10 10 C 1.52998 * 109.47118 * 245.98301 * 8 7 6 11 11 C 1.52992 * 109.47403 * 125.98056 * 8 7 6 12 12 C 1.39821 * 108.28528 * 0.24310 * 7 6 5 13 13 C 1.50698 * 126.08688 * 179.75994 * 12 7 6 14 14 C 1.50692 * 109.47284 * 95.65020 * 13 12 7 15 15 H 1.08007 * 120.00040 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00233 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99961 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00135 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47209 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47298 * 119.99478 * 18 16 14 21 21 H 1.48500 * 109.47136 * 239.99338 * 18 16 14 22 22 C 1.35124 * 126.03585 * 270.00109 * 5 4 2 23 23 O 1.35763 * 126.19563 * 359.97438 * 22 5 4 24 24 H 1.07991 * 120.00027 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99296 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47288 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47407 * 299.99535 * 3 2 1 28 28 H 1.09003 * 109.47200 * 59.99509 * 3 2 1 29 29 H 1.09002 * 109.47349 * 335.00134 * 4 2 1 30 30 H 1.09005 * 109.46593 * 215.00185 * 4 2 1 31 31 H 1.09000 * 109.47068 * 60.00391 * 9 8 7 32 32 H 1.08997 * 109.47615 * 300.00038 * 9 8 7 33 33 H 1.09003 * 109.47135 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.47348 * 184.43125 * 10 8 7 35 35 H 1.09002 * 109.47547 * 304.43278 * 10 8 7 36 36 H 1.09002 * 109.47066 * 64.42899 * 10 8 7 37 37 H 1.09000 * 109.47112 * 299.99945 * 11 8 7 38 38 H 1.09003 * 109.47003 * 60.00212 * 11 8 7 39 39 H 1.09007 * 109.47260 * 179.97438 * 11 8 7 40 40 H 1.09003 * 109.47156 * 215.65282 * 13 12 7 41 41 H 1.09000 * 109.47001 * 335.64652 * 13 12 7 42 42 H 0.97001 * 120.00204 * 180.02562 * 17 16 14 43 43 H 0.96702 * 113.99862 * 90.02652 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4120 -1.6684 -1.3752 6 7 3.5855 -1.3089 -2.0503 7 6 3.5391 -1.8164 -3.2553 8 6 4.5998 -1.6711 -4.3158 9 6 5.8185 -0.9600 -3.7242 10 6 4.0462 -0.8494 -5.4816 11 6 5.0117 -3.0562 -4.8184 12 6 2.3337 -2.5116 -3.3924 13 6 1.8677 -3.2462 -4.6229 14 6 2.2214 -4.7059 -4.5007 15 1 2.7322 -5.0659 -3.6197 16 6 1.8929 -5.5820 -5.5134 17 7 1.2705 -5.1438 -6.5858 18 14 2.3307 -7.3916 -5.3615 19 1 3.0219 -7.6269 -4.0684 20 1 1.0909 -8.2072 -5.4161 21 1 3.2278 -7.7794 -6.4796 22 6 1.6585 -2.4098 -2.2168 23 8 0.4447 -2.9515 -1.9400 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 3.1352 1.1060 0.0005 27 1 1.8003 1.8766 -0.8900 28 1 1.8001 1.8767 0.8900 29 1 1.4386 -2.0853 0.4352 30 1 2.9742 -1.1985 0.5901 31 1 6.2129 -1.5454 -2.8936 32 1 5.5251 0.0268 -3.3661 33 1 6.5859 -0.8553 -4.4911 34 1 4.7850 -0.8106 -6.2821 35 1 3.1327 -1.3144 -5.8526 36 1 3.8262 0.1624 -5.1409 37 1 5.4061 -3.6416 -3.9879 38 1 4.1434 -3.5627 -5.2400 39 1 5.7786 -2.9510 -5.5859 40 1 0.7872 -3.1411 -4.7214 41 1 2.3552 -2.8266 -5.5029 42 1 1.0391 -5.7602 -7.2982 43 1 -0.3014 -2.3746 -2.1536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179914991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:54 Heat of formation + Delta-G solvation = 35.051669 kcal Electronic energy + Delta-G solvation = -22815.445357 eV Core-core repulsion = 19669.754153 eV Total energy + Delta-G solvation = -3145.691204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.86762 -37.20494 -36.40713 -35.43983 -33.21330 -31.29469 -29.97429 -27.41775 -27.00931 -26.67477 -26.37949 -25.50891 -22.74653 -21.39465 -19.96358 -18.72600 -18.16724 -17.00715 -16.30050 -15.78680 -15.16184 -14.68364 -14.44202 -14.15372 -14.07917 -13.67106 -13.25790 -13.01391 -12.88334 -12.66687 -12.20223 -11.90900 -11.75527 -11.68768 -11.53915 -11.40098 -11.22441 -11.17545 -10.95430 -10.75242 -10.65345 -10.44209 -10.31982 -10.18031 -9.63224 -9.33620 -9.28389 -9.19597 -8.40876 -8.28992 -7.33099 -5.92460 -3.92686 1.84207 2.39558 3.09447 3.35563 3.42882 3.46718 3.55860 4.51668 4.55502 4.65682 4.81264 5.04502 5.28460 5.39869 5.43009 5.46464 5.49906 5.58510 5.59416 5.75578 5.85086 5.89431 6.05027 6.18467 6.27278 6.35486 6.39176 6.42088 6.45822 6.59293 6.63188 6.65483 6.71835 6.91389 6.94143 7.16736 7.37159 7.45770 7.73944 7.84580 8.04767 8.21994 8.42609 8.50942 9.11114 9.68785 11.16559 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.006364 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.447766 B = 4398.778777 C = 5460.714396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C -0.114 4.114 4 C 0.170 3.830 5 N -0.389 5.389 6 N -0.290 5.290 7 C 0.095 3.905 8 C 0.021 3.979 9 C -0.132 4.132 10 C -0.141 4.141 11 C -0.153 4.153 12 C -0.180 4.180 13 C 0.087 3.913 14 C -0.491 4.491 15 H 0.053 0.947 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.886 3.114 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.284 1.284 22 C 0.231 3.769 23 O -0.457 6.457 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.019 0.981 41 H 0.037 0.963 42 H 0.259 0.741 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 11.459 9.299 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.142 4.142 3 C -0.171 4.171 4 C 0.049 3.951 5 N -0.183 5.183 6 N -0.115 5.115 7 C -0.070 4.070 8 C 0.019 3.981 9 C -0.189 4.189 10 C -0.198 4.198 11 C -0.210 4.210 12 C -0.191 4.191 13 C 0.050 3.950 14 C -0.530 4.530 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.537 5.537 18 Si 0.714 3.286 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.211 1.211 22 C 0.065 3.935 23 O -0.258 6.258 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.474 11.549 10.290 15.665 hybrid contribution -0.819 -1.176 -0.367 1.480 sum 1.655 10.373 9.923 14.450 Atomic orbital electron populations 1.23806 0.95201 1.02246 1.00454 1.22096 0.95590 0.96110 1.00440 1.20783 1.00609 0.94115 1.01583 1.20483 1.00125 0.94143 0.80379 1.48777 1.15914 1.42194 1.11389 1.77193 1.03056 1.24240 1.07020 1.21864 0.95655 0.96639 0.92847 1.18871 0.90993 0.97075 0.91203 1.21772 0.96791 1.00201 1.00166 1.21936 1.02216 0.98863 0.96821 1.22138 1.03696 0.94822 1.00354 1.20576 0.95717 1.05656 0.97180 1.17755 0.95891 0.93361 0.88002 1.21097 1.36507 0.92293 1.03075 0.92902 1.24946 0.95495 0.98347 0.95494 1.69952 1.41250 1.34729 1.07768 0.86621 0.78090 0.85880 0.77990 1.19857 1.21183 1.21062 1.18506 0.87577 0.97442 0.89933 1.84928 1.12135 1.42139 1.86587 0.88082 0.88099 0.91473 0.91709 0.91719 0.88922 0.88883 0.92835 0.92888 0.92999 0.92482 0.90724 0.93493 0.93457 0.87483 0.93477 0.96322 0.94527 0.93153 0.76477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 13.93 29.01 0.40 -1.47 16 2 C -0.14 -1.67 5.64 -101.07 -0.57 -2.24 16 3 C -0.11 -1.22 10.05 36.00 0.36 -0.86 16 4 C 0.17 2.34 6.46 -5.19 -0.03 2.31 16 5 N -0.39 -7.04 3.60 -62.66 -0.23 -7.27 16 6 N -0.29 -5.63 11.86 33.66 0.40 -5.23 16 7 C 0.10 1.94 5.61 -82.43 -0.46 1.48 16 8 C 0.02 0.37 0.75 -155.67 -0.12 0.26 16 9 C -0.13 -2.03 7.96 37.16 0.30 -1.74 16 10 C -0.14 -2.35 8.36 37.16 0.31 -2.04 16 11 C -0.15 -2.94 8.25 37.15 0.31 -2.63 16 12 C -0.18 -4.03 5.11 -104.85 -0.54 -4.56 16 13 C 0.09 2.22 4.42 -29.04 -0.13 2.09 16 14 C -0.49 -13.59 7.48 -34.44 -0.26 -13.85 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.04 13.29 55.43 0.74 -25.31 16 18 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.23 4.70 7.92 -16.92 -0.13 4.57 16 23 O -0.46 -8.52 13.53 -19.00 -0.26 -8.77 16 24 H 0.10 0.92 8.05 -52.49 -0.42 0.49 16 25 H 0.10 1.01 7.99 -52.49 -0.42 0.59 16 26 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.19 7.98 -51.93 -0.41 0.78 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.41 5.65 -51.93 -0.29 1.11 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.11 2.44 4.18 -51.93 -0.22 2.22 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.04 0.94 4.59 -51.93 -0.24 0.71 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.38 5.28 9.06 45.56 0.41 5.70 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -31.40 351.63 -5.92 -37.32 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.20 Total: 4.40 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.66 Total: -17.19 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.91 Total: -37.81 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.26 Total: -8.77 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.40 -5.92 -37.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179914991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.375 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds