Wall clock time and date at job start Tue Mar 31 2020 00:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99877 * 2 1 4 4 C 1.50703 * 119.99944 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47196 * 95.00401 * 4 2 1 6 6 N 1.40072 * 126.03481 * 90.02115 * 5 4 2 7 7 C 1.30829 * 108.33954 * 179.97438 * 6 5 4 8 8 C 1.50698 * 125.86038 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46897 * 5.97792 * 8 7 6 10 10 C 1.52998 * 109.47118 * 245.98301 * 8 7 6 11 11 C 1.52992 * 109.47403 * 125.98056 * 8 7 6 12 12 C 1.39821 * 108.28528 * 0.24310 * 7 6 5 13 13 C 1.50698 * 126.08688 * 179.75994 * 12 7 6 14 14 C 1.50692 * 109.47284 * 95.65020 * 13 12 7 15 15 H 1.08007 * 120.00040 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00233 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99961 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00135 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47209 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47298 * 119.99478 * 18 16 14 21 21 H 1.48500 * 109.47136 * 239.99338 * 18 16 14 22 22 C 1.35124 * 126.03585 * 270.00109 * 5 4 2 23 23 O 1.35763 * 126.19563 * 359.97438 * 22 5 4 24 24 H 1.07991 * 120.00027 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99296 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47288 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47407 * 299.99535 * 3 2 1 28 28 H 1.09003 * 109.47200 * 59.99509 * 3 2 1 29 29 H 1.09002 * 109.47349 * 335.00134 * 4 2 1 30 30 H 1.09005 * 109.46593 * 215.00185 * 4 2 1 31 31 H 1.09000 * 109.47068 * 60.00391 * 9 8 7 32 32 H 1.08997 * 109.47615 * 300.00038 * 9 8 7 33 33 H 1.09003 * 109.47135 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.47348 * 184.43125 * 10 8 7 35 35 H 1.09002 * 109.47547 * 304.43278 * 10 8 7 36 36 H 1.09002 * 109.47066 * 64.42899 * 10 8 7 37 37 H 1.09000 * 109.47112 * 299.99945 * 11 8 7 38 38 H 1.09003 * 109.47003 * 60.00212 * 11 8 7 39 39 H 1.09007 * 109.47260 * 179.97438 * 11 8 7 40 40 H 1.09003 * 109.47156 * 215.65282 * 13 12 7 41 41 H 1.09000 * 109.47001 * 335.64652 * 13 12 7 42 42 H 0.97001 * 120.00204 * 180.02562 * 17 16 14 43 43 H 0.96702 * 113.99862 * 90.02652 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4120 -1.6684 -1.3752 6 7 3.5855 -1.3089 -2.0503 7 6 3.5391 -1.8164 -3.2553 8 6 4.5998 -1.6711 -4.3158 9 6 5.8185 -0.9600 -3.7242 10 6 4.0462 -0.8494 -5.4816 11 6 5.0117 -3.0562 -4.8184 12 6 2.3337 -2.5116 -3.3924 13 6 1.8677 -3.2462 -4.6229 14 6 2.2214 -4.7059 -4.5007 15 1 2.7322 -5.0659 -3.6197 16 6 1.8929 -5.5820 -5.5134 17 7 1.2705 -5.1438 -6.5858 18 14 2.3307 -7.3916 -5.3615 19 1 3.0219 -7.6269 -4.0684 20 1 1.0909 -8.2072 -5.4161 21 1 3.2278 -7.7794 -6.4796 22 6 1.6585 -2.4098 -2.2168 23 8 0.4447 -2.9515 -1.9400 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 3.1352 1.1060 0.0005 27 1 1.8003 1.8766 -0.8900 28 1 1.8001 1.8767 0.8900 29 1 1.4386 -2.0853 0.4352 30 1 2.9742 -1.1985 0.5901 31 1 6.2129 -1.5454 -2.8936 32 1 5.5251 0.0268 -3.3661 33 1 6.5859 -0.8553 -4.4911 34 1 4.7850 -0.8106 -6.2821 35 1 3.1327 -1.3144 -5.8526 36 1 3.8262 0.1624 -5.1409 37 1 5.4061 -3.6416 -3.9879 38 1 4.1434 -3.5627 -5.2400 39 1 5.7786 -2.9510 -5.5859 40 1 0.7872 -3.1411 -4.7214 41 1 2.3552 -2.8266 -5.5029 42 1 1.0391 -5.7602 -7.2982 43 1 -0.3014 -2.3746 -2.1536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179914991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:53 Heat of formation + Delta-G solvation = 14.983589 kcal Electronic energy + Delta-G solvation = -22816.315574 eV Core-core repulsion = 19669.754153 eV Total energy + Delta-G solvation = -3146.561421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38209 -38.60724 -37.69478 -36.66319 -35.24892 -32.82642 -31.62800 -28.65793 -28.26057 -28.00301 -27.81525 -27.00587 -24.66906 -22.80662 -21.56749 -19.80006 -19.59378 -18.41544 -18.39177 -17.31863 -16.48868 -16.35607 -15.84053 -15.45954 -15.28891 -15.01958 -14.52177 -14.43062 -14.42120 -14.06360 -13.90779 -13.30829 -13.07943 -12.97694 -12.93086 -12.77756 -12.67536 -12.62704 -12.49089 -12.38141 -12.22906 -12.06276 -11.69853 -11.66946 -11.49194 -11.33271 -10.88519 -10.42439 -10.22763 -9.85700 -9.00259 -8.06358 -6.14445 0.76125 0.97801 1.39488 1.41384 1.52832 1.79602 1.92217 2.48729 3.17608 3.22711 3.59889 3.73477 3.84985 4.06287 4.22502 4.23600 4.42442 4.50020 4.59571 4.66936 4.77792 4.79587 4.90015 4.92977 4.94842 5.01773 5.06406 5.08936 5.13545 5.18360 5.32385 5.33807 5.45150 5.53130 5.58708 5.73082 5.78235 5.81932 5.85342 5.90230 6.02021 6.37856 6.79271 6.89223 6.94042 7.49998 9.00967 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.006364 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.447766 B = 4398.778777 C = 5460.714396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.159 4.159 3 C -0.110 4.110 4 C 0.162 3.838 5 N -0.379 5.379 6 N -0.291 5.291 7 C 0.089 3.911 8 C 0.017 3.983 9 C -0.122 4.122 10 C -0.134 4.134 11 C -0.147 4.147 12 C -0.222 4.222 13 C 0.106 3.894 14 C -0.495 4.495 15 H 0.035 0.965 16 C 0.012 3.988 17 N -0.927 5.927 18 Si 0.945 3.055 19 H -0.275 1.275 20 H -0.280 1.280 21 H -0.275 1.275 22 C 0.236 3.764 23 O -0.466 6.466 24 H 0.119 0.881 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.068 0.932 39 H 0.072 0.928 40 H -0.011 1.011 41 H 0.026 0.974 42 H 0.262 0.738 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 12.339 10.440 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.166 4.166 4 C 0.042 3.958 5 N -0.172 5.172 6 N -0.116 5.116 7 C -0.076 4.076 8 C 0.014 3.986 9 C -0.179 4.179 10 C -0.192 4.192 11 C -0.204 4.204 12 C -0.234 4.234 13 C 0.068 3.932 14 C -0.533 4.533 15 H 0.053 0.947 16 C -0.185 4.185 17 N -0.568 5.568 18 Si 0.771 3.229 19 H -0.200 1.200 20 H -0.206 1.206 21 H -0.200 1.200 22 C 0.069 3.931 23 O -0.270 6.270 24 H 0.137 0.863 25 H 0.123 0.877 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.007 0.993 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.021 12.452 11.455 17.187 hybrid contribution -1.087 -1.423 -0.629 1.897 sum 1.935 11.030 10.826 15.576 Atomic orbital electron populations 1.24034 0.94812 1.03359 0.97901 1.22033 0.96011 0.95450 1.02554 1.20755 0.99789 0.93733 1.02352 1.20853 1.01234 0.95648 0.78065 1.49083 1.14904 1.40794 1.12408 1.77149 1.03539 1.24326 1.06613 1.22138 0.95556 0.96281 0.93631 1.18995 0.91659 0.96718 0.91179 1.21682 0.95963 0.99737 1.00521 1.21867 1.01460 0.98848 0.97018 1.22023 1.02637 0.95304 1.00473 1.20402 0.97765 1.08007 0.97225 1.17381 0.93678 0.92665 0.89468 1.21203 1.36027 0.93794 1.02305 0.94682 1.25626 0.95481 1.02216 0.95193 1.70047 1.42210 1.36108 1.08409 0.85705 0.78016 0.81213 0.77985 1.20001 1.20635 1.20013 1.18500 0.88006 0.96740 0.89887 1.84849 1.12384 1.43188 1.86553 0.86261 0.87712 0.92496 0.92307 0.89556 0.88056 0.87811 0.93532 0.92406 0.90488 0.90201 0.93645 0.92312 0.94479 0.91330 0.90931 0.99319 0.95574 0.92912 0.74017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 13.93 67.78 0.94 -2.04 16 2 C -0.16 -3.43 5.64 -16.49 -0.09 -3.52 16 3 C -0.11 -2.12 10.05 71.23 0.72 -1.40 16 4 C 0.16 4.18 6.46 85.63 0.55 4.73 16 5 N -0.38 -13.40 3.60 -463.48 -1.67 -15.06 16 6 N -0.29 -11.09 11.86 -47.42 -0.56 -11.66 16 7 C 0.09 3.63 5.61 43.09 0.24 3.87 16 8 C 0.02 0.59 0.75 -52.93 -0.04 0.55 16 9 C -0.12 -3.51 7.96 71.98 0.57 -2.93 16 10 C -0.13 -4.41 8.36 71.98 0.60 -3.81 16 11 C -0.15 -5.67 8.25 71.98 0.59 -5.07 16 12 C -0.22 -10.19 5.11 -20.01 -0.10 -10.29 16 13 C 0.11 5.60 4.42 29.10 0.13 5.72 16 14 C -0.49 -28.29 7.48 25.60 0.19 -28.10 16 15 H 0.03 2.08 7.74 -2.91 -0.02 2.06 16 16 C 0.01 0.71 5.46 84.66 0.46 1.17 16 17 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 18 Si 0.94 45.22 29.54 68.60 2.03 47.24 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 22 C 0.24 9.64 7.92 83.66 0.66 10.30 16 23 O -0.47 -17.24 13.53 -90.90 -1.23 -18.47 16 24 H 0.12 1.77 8.05 -2.92 -0.02 1.75 16 25 H 0.10 1.84 7.99 -2.91 -0.02 1.81 16 26 H 0.06 1.21 8.00 -2.39 -0.02 1.19 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 2.43 7.98 -2.39 -0.02 2.41 16 30 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 1.75 5.65 -2.39 -0.01 1.74 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 3.22 4.18 -2.39 -0.01 3.21 16 39 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 41 H 0.03 1.42 4.59 -2.39 -0.01 1.41 16 42 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.40 10.91 9.06 -74.06 -0.67 10.24 16 Total: -1.00 -68.54 351.63 4.61 -63.93 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.32 Total: 19.57 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 5.43 Total: -30.82 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.95 Total: -81.45 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.23 Total: -18.47 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -68.54 4.61 -63.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179914991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.911 kcal (2) G-P(sol) polarization free energy of solvation -68.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds