Wall clock time and date at job start Tue Mar 31 2020 00:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21633 * 120.00027 * 359.97438 * 14 13 3 16 16 C 1.47264 * 120.00547 * 180.02562 * 14 13 3 17 17 C 1.46694 * 126.93671 * 0.02562 * 16 14 13 18 18 C 1.34492 * 106.32737 * 179.97438 * 17 16 14 19 19 C 1.50701 * 125.56825 * 180.02562 * 18 17 16 20 20 N 1.36444 * 108.85607 * 0.02562 * 18 17 16 21 21 C 1.46508 * 124.84522 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.46465 * 89.98096 * 21 20 18 23 23 C 1.34653 * 110.30280 * 359.74695 * 20 18 17 24 24 C 1.50696 * 125.80342 * 180.29670 * 23 20 18 25 25 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 26 26 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 27 27 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 32 32 H 1.07993 * 126.83720 * 0.02562 * 17 16 14 33 33 H 1.09004 * 109.46606 * 89.98125 * 19 18 17 34 34 H 1.08993 * 109.47141 * 209.98113 * 19 18 17 35 35 H 1.09001 * 109.46844 * 329.98182 * 19 18 17 36 36 H 1.09001 * 109.46787 * 209.97226 * 21 20 18 37 37 H 1.08993 * 109.47581 * 329.97926 * 21 20 18 38 38 H 1.08993 * 109.47360 * 59.99695 * 22 21 20 39 39 H 1.09004 * 109.46958 * 179.97438 * 22 21 20 40 40 H 1.09009 * 109.47193 * 299.99222 * 22 21 20 41 41 H 1.09004 * 109.47066 * 270.15518 * 24 23 20 42 42 H 1.08994 * 109.47292 * 30.15269 * 24 23 20 43 43 H 1.09002 * 109.47055 * 150.15891 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3417 2.6320 -0.4317 16 6 0.0455 3.3223 -2.6255 17 6 0.8556 3.4486 -3.8419 18 6 0.1009 4.1185 -4.7310 19 6 0.5157 4.4857 -6.1325 20 7 -1.1016 4.4113 -4.1566 21 6 -2.1906 5.1353 -4.8171 22 6 -3.1051 4.1388 -5.5325 23 6 -1.1467 3.9346 -2.8981 24 6 -2.3119 4.0567 -1.9503 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.8288 -0.0530 2.9544 31 1 2.2721 2.1230 -1.9977 32 1 1.8581 3.0768 -3.9937 33 1 0.2342 3.6849 -6.8162 34 1 0.0172 5.4086 -6.4289 35 1 1.5957 4.6292 -6.1659 36 1 -2.7653 5.6857 -4.0722 37 1 -1.7748 5.8332 -5.5437 38 1 -3.5209 3.4409 -4.8059 39 1 -3.9156 4.6773 -6.0236 40 1 -2.5304 3.5883 -6.2775 41 1 -2.2161 4.9766 -1.3734 42 1 -3.2417 4.0795 -2.5186 43 1 -2.3207 3.2025 -1.2733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183848459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:44 Heat of formation + Delta-G solvation = -10.546421 kcal Electronic energy + Delta-G solvation = -22214.283840 eV Core-core repulsion = 19066.615355 eV Total energy + Delta-G solvation = -3147.668485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29232 -38.38422 -34.87690 -34.10064 -32.53395 -32.14136 -30.83234 -29.28805 -28.92267 -26.84580 -24.66448 -23.73269 -22.82544 -21.45995 -19.95109 -19.00118 -18.46036 -16.85243 -16.22639 -15.37064 -15.17656 -15.07365 -14.56659 -14.09928 -14.08616 -13.46338 -13.27657 -13.08074 -12.95928 -12.88113 -12.56838 -12.41468 -12.25634 -12.05989 -11.79562 -11.55981 -11.49241 -11.31403 -11.15608 -11.13374 -10.85193 -10.73358 -10.20143 -10.02608 -9.49164 -8.90706 -8.75289 -8.38401 -8.34091 -7.78858 -7.50066 -6.02209 -4.10325 2.18786 2.64921 2.87716 3.29969 3.37614 3.40925 4.34211 4.41009 4.44034 4.64307 4.72561 4.78096 4.91831 5.01644 5.20108 5.29128 5.30796 5.32325 5.43559 5.46584 5.68373 5.78318 5.81199 5.85760 5.97086 6.15457 6.26921 6.52452 6.55633 6.61267 6.81540 7.08893 7.20434 7.29160 7.38189 7.45568 7.53017 7.68402 7.76581 7.92528 8.06700 8.31639 8.89200 8.98489 9.42078 9.59840 11.03276 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025783 B = 0.004311 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.746586 B = 6493.269051 C = 7175.162389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.704 5.704 14 C 0.576 3.424 15 O -0.561 6.561 16 C -0.218 4.218 17 C -0.165 4.165 18 C 0.001 3.999 19 C -0.079 4.079 20 N -0.442 5.442 21 C 0.096 3.904 22 C -0.170 4.170 23 C 0.092 3.908 24 C -0.089 4.089 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.019 0.981 28 H 0.029 0.971 29 H 0.097 0.903 30 H 0.262 0.738 31 H 0.387 0.613 32 H 0.143 0.857 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 8.423 -16.441 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.351 5.351 14 C 0.363 3.637 15 O -0.442 6.442 16 C -0.228 4.228 17 C -0.189 4.189 18 C -0.106 4.106 19 C -0.136 4.136 20 N -0.120 5.120 21 C -0.026 4.026 22 C -0.227 4.227 23 C -0.023 4.023 24 C -0.146 4.146 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.219 0.781 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.888 8.466 -15.746 20.932 hybrid contribution 1.375 -0.031 -0.330 1.414 sum -9.513 8.435 -16.076 20.496 Atomic orbital electron populations 1.21832 0.98393 0.97767 1.01362 1.21916 0.92644 0.99931 1.02017 1.18730 0.93965 0.89102 0.81289 0.93379 1.21314 0.90960 1.38580 1.05949 0.92126 1.24883 0.98427 0.94981 0.95460 1.69919 1.34869 1.38045 1.09269 0.86432 0.85173 0.77666 0.78045 1.19776 1.20979 1.20963 1.46258 1.14613 1.56011 1.18188 1.17279 0.82465 0.78205 0.85717 1.90679 1.51719 1.61572 1.40269 1.20524 0.95508 1.10503 0.96216 1.21833 0.99796 1.04645 0.92622 1.20076 0.86825 1.06965 0.96781 1.20269 1.02170 1.00857 0.90348 1.43540 1.12694 1.44626 1.11162 1.21783 0.88182 0.94800 0.97793 1.22168 0.99535 0.99846 1.01194 1.20218 0.97365 0.99437 0.85315 1.20512 0.92083 1.05000 0.97033 0.93204 0.94048 0.96156 0.95195 0.88499 0.92774 0.78114 0.83976 0.91440 0.92249 0.90270 0.89333 0.89402 0.91697 0.90940 0.91847 0.91002 0.92667 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.21 5.45 -26.73 -0.15 -3.36 16 3 C 0.27 7.15 2.24 -69.09 -0.15 6.99 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.51 8.73 -34.44 -0.30 -14.81 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 8 N -0.88 -25.36 11.30 55.43 0.63 -24.73 16 9 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 N -0.70 -15.94 5.02 -56.07 -0.28 -16.22 16 14 C 0.58 12.68 6.38 -12.59 -0.08 12.60 16 15 O -0.56 -13.64 11.95 5.25 0.06 -13.58 16 16 C -0.22 -3.99 6.29 -103.35 -0.65 -4.64 16 17 C -0.16 -2.55 10.45 -37.49 -0.39 -2.94 16 18 C 0.00 0.01 6.85 -81.86 -0.56 -0.55 16 19 C -0.08 -0.69 10.06 36.01 0.36 -0.33 16 20 N -0.44 -5.58 2.68 -107.96 -0.29 -5.87 16 21 C 0.10 0.80 6.08 -4.04 -0.02 0.78 16 22 C -0.17 -1.23 10.24 37.16 0.38 -0.85 16 23 C 0.09 1.44 6.89 -81.89 -0.56 0.87 16 24 C -0.09 -1.24 9.26 36.00 0.33 -0.90 16 25 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 26 H 0.04 0.96 5.64 -51.93 -0.29 0.67 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.70 5.96 -51.93 -0.31 2.39 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.39 7.90 7.66 -40.82 -0.31 7.58 16 32 H 0.14 2.00 7.69 -52.49 -0.40 1.60 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.42 6.94 -51.93 -0.36 0.06 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.65 7.51 -51.93 -0.39 0.26 16 37 H 0.09 0.57 6.90 -51.93 -0.36 0.22 16 38 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 43 H 0.10 1.71 6.47 -51.93 -0.34 1.38 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -32.10 343.44 -8.18 -40.28 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.88 Total: 7.16 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.57 Total: -8.32 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.06 Total: -46.82 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.06 Total: -13.58 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.10 -8.18 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183848459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.731 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds