Wall clock time and date at job start Tue Mar 31 2020 00:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21633 * 120.00027 * 359.97438 * 14 13 3 16 16 C 1.47264 * 120.00547 * 180.02562 * 14 13 3 17 17 C 1.46694 * 126.93671 * 0.02562 * 16 14 13 18 18 C 1.34492 * 106.32737 * 179.97438 * 17 16 14 19 19 C 1.50701 * 125.56825 * 180.02562 * 18 17 16 20 20 N 1.36444 * 108.85607 * 0.02562 * 18 17 16 21 21 C 1.46508 * 124.84522 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.46465 * 89.98096 * 21 20 18 23 23 C 1.34653 * 110.30280 * 359.74695 * 20 18 17 24 24 C 1.50696 * 125.80342 * 180.29670 * 23 20 18 25 25 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 26 26 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 27 27 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 32 32 H 1.07993 * 126.83720 * 0.02562 * 17 16 14 33 33 H 1.09004 * 109.46606 * 89.98125 * 19 18 17 34 34 H 1.08993 * 109.47141 * 209.98113 * 19 18 17 35 35 H 1.09001 * 109.46844 * 329.98182 * 19 18 17 36 36 H 1.09001 * 109.46787 * 209.97226 * 21 20 18 37 37 H 1.08993 * 109.47581 * 329.97926 * 21 20 18 38 38 H 1.08993 * 109.47360 * 59.99695 * 22 21 20 39 39 H 1.09004 * 109.46958 * 179.97438 * 22 21 20 40 40 H 1.09009 * 109.47193 * 299.99222 * 22 21 20 41 41 H 1.09004 * 109.47066 * 270.15518 * 24 23 20 42 42 H 1.08994 * 109.47292 * 30.15269 * 24 23 20 43 43 H 1.09002 * 109.47055 * 150.15891 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3417 2.6320 -0.4317 16 6 0.0455 3.3223 -2.6255 17 6 0.8556 3.4486 -3.8419 18 6 0.1009 4.1185 -4.7310 19 6 0.5157 4.4857 -6.1325 20 7 -1.1016 4.4113 -4.1566 21 6 -2.1906 5.1353 -4.8171 22 6 -3.1051 4.1388 -5.5325 23 6 -1.1467 3.9346 -2.8981 24 6 -2.3119 4.0567 -1.9503 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.8288 -0.0530 2.9544 31 1 2.2721 2.1230 -1.9977 32 1 1.8581 3.0768 -3.9937 33 1 0.2342 3.6849 -6.8162 34 1 0.0172 5.4086 -6.4289 35 1 1.5957 4.6292 -6.1659 36 1 -2.7653 5.6857 -4.0722 37 1 -1.7748 5.8332 -5.5437 38 1 -3.5209 3.4409 -4.8059 39 1 -3.9156 4.6773 -6.0236 40 1 -2.5304 3.5883 -6.2775 41 1 -2.2161 4.9766 -1.3734 42 1 -3.2417 4.0795 -2.5186 43 1 -2.3207 3.2025 -1.2733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183848459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:44 Heat of formation + Delta-G solvation = -30.002346 kcal Electronic energy + Delta-G solvation = -22215.127512 eV Core-core repulsion = 19066.615355 eV Total energy + Delta-G solvation = -3148.512157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.39242 -40.14345 -36.82825 -34.99424 -34.19770 -33.50997 -32.73875 -30.29508 -29.96263 -28.78581 -25.96573 -24.97907 -24.33775 -22.80711 -21.61406 -20.74512 -19.72951 -18.46875 -17.63828 -17.06003 -16.56750 -16.38288 -16.02455 -15.75481 -15.44226 -14.62414 -14.54714 -14.34331 -14.12404 -13.94626 -13.82282 -13.57486 -13.42690 -13.39828 -13.15957 -13.11723 -12.83824 -12.83250 -12.68281 -12.44241 -12.22045 -12.12641 -12.07030 -12.00253 -11.56416 -11.01035 -10.59246 -10.43493 -9.64367 -9.36200 -8.84910 -8.13932 -6.30983 0.89415 1.44411 1.44935 1.50948 1.57640 1.91514 2.40447 2.80244 2.94518 3.15366 3.82291 3.83900 3.96309 4.13890 4.22609 4.38117 4.39968 4.51486 4.54242 4.59638 4.66218 4.71307 4.79270 4.81459 4.85081 4.90517 5.02290 5.07979 5.10296 5.16666 5.26911 5.28305 5.39906 5.48027 5.59639 5.71738 5.82966 5.90758 6.00406 6.20798 6.23204 6.47337 6.77549 7.17172 7.36449 7.75047 8.91929 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025783 B = 0.004311 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.746586 B = 6493.269051 C = 7175.162389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.003 1.003 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.705 5.705 14 C 0.571 3.429 15 O -0.594 6.594 16 C -0.263 4.263 17 C -0.192 4.192 18 C 0.018 3.982 19 C -0.077 4.077 20 N -0.433 5.433 21 C 0.086 3.914 22 C -0.165 4.165 23 C 0.092 3.908 24 C -0.085 4.085 25 H 0.027 0.973 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.397 0.603 32 H 0.147 0.853 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.271 9.711 -19.575 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.352 5.352 14 C 0.361 3.639 15 O -0.478 6.478 16 C -0.273 4.273 17 C -0.216 4.216 18 C -0.090 4.090 19 C -0.134 4.134 20 N -0.110 5.110 21 C -0.034 4.034 22 C -0.223 4.223 23 C -0.025 4.025 24 C -0.142 4.142 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.231 0.769 32 H 0.165 0.835 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.134 0.866 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.028 9.774 -18.935 23.994 hybrid contribution 1.304 -0.359 0.585 1.474 sum -9.724 9.415 -18.350 22.802 Atomic orbital electron populations 1.21648 0.96990 0.98928 1.00218 1.21764 0.93803 0.99199 1.01000 1.18337 0.93574 0.89089 0.81342 0.98531 1.21613 0.91501 1.38952 1.06536 0.91470 1.25785 1.03442 0.94339 0.94921 1.70065 1.36979 1.38522 1.09766 0.85304 0.78992 0.77900 0.78165 1.18623 1.20861 1.20222 1.46050 1.15465 1.56422 1.17272 1.17871 0.81592 0.77569 0.86849 1.90647 1.52465 1.62805 1.41932 1.20345 0.97958 1.13265 0.95745 1.21970 1.00568 1.06669 0.92380 1.20685 0.86053 1.04377 0.97907 1.20421 1.03002 1.02464 0.87538 1.43861 1.13667 1.43466 1.10018 1.22228 0.87366 0.95189 0.98602 1.22145 0.99978 0.99503 1.00650 1.20359 0.96733 0.98653 0.86787 1.20453 0.93290 1.03681 0.96769 0.95375 0.94114 0.93652 0.94498 0.90898 0.92602 0.76906 0.83549 0.89943 0.89802 0.89451 0.88108 0.86648 0.93306 0.88116 0.92168 0.90590 0.89154 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.51 71.98 0.61 -5.26 16 2 C -0.12 -6.29 5.45 30.59 0.17 -6.12 16 3 C 0.28 15.53 2.24 44.25 0.10 15.63 16 4 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 5 C -0.55 -30.83 8.73 25.60 0.22 -30.61 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 7 C 0.01 0.84 5.30 84.66 0.45 1.29 16 8 N -0.91 -54.18 11.30 21.45 0.24 -53.94 16 9 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.70 -33.43 5.02 -449.54 -2.26 -35.68 16 14 C 0.57 26.45 6.38 86.62 0.55 27.00 16 15 O -0.59 -30.83 11.95 -4.14 -0.05 -30.88 16 16 C -0.26 -9.86 6.29 -19.04 -0.12 -9.98 16 17 C -0.19 -5.86 10.45 23.62 0.25 -5.61 16 18 C 0.02 0.43 6.85 40.98 0.28 0.71 16 19 C -0.08 -1.04 10.06 71.24 0.72 -0.32 16 20 N -0.43 -9.87 2.68 -495.48 -1.33 -11.20 16 21 C 0.09 1.09 6.08 86.38 0.53 1.61 16 22 C -0.17 -1.78 10.24 71.98 0.74 -1.05 16 23 C 0.09 2.84 6.89 41.78 0.29 3.13 16 24 C -0.08 -2.34 9.26 71.23 0.66 -1.68 16 25 H 0.03 1.45 7.84 -2.39 -0.02 1.43 16 26 H 0.04 1.96 5.64 -2.39 -0.01 1.95 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 4.23 5.96 -2.39 -0.01 4.22 16 30 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 31 H 0.40 16.84 7.66 -92.71 -0.71 16.13 16 32 H 0.15 4.12 7.69 -2.91 -0.02 4.10 16 33 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.08 0.76 6.94 -2.39 -0.02 0.74 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 1.08 7.51 -2.39 -0.02 1.07 16 37 H 0.12 0.89 6.90 -2.39 -0.02 0.88 16 38 H 0.05 0.70 8.11 -2.39 -0.02 0.68 16 39 H 0.10 0.55 8.14 -2.38 -0.02 0.54 16 40 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.09 1.78 7.56 -2.39 -0.02 1.76 16 43 H 0.07 2.47 6.47 -2.39 -0.02 2.45 16 Total: -1.00 -73.72 343.44 4.36 -69.36 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.29 Total: 27.87 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 5.44 Total: -11.26 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -3.34 Total: -100.82 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.05 Total: -30.88 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -73.72 4.36 -69.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183848459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.356 kcal (2) G-P(sol) polarization free energy of solvation -73.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds