Wall clock time and date at job start Tue Mar 31 2020 00:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69360 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69117 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69381 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21624 * 119.99829 * 0.02562 * 14 13 3 16 16 C 1.47260 * 119.99946 * 179.97438 * 14 13 3 17 17 C 1.46689 * 126.94057 * 0.02701 * 16 14 13 18 18 C 1.34495 * 106.33267 * 179.97438 * 17 16 14 19 19 C 1.50697 * 125.57397 * 180.02562 * 18 17 16 20 20 N 1.36446 * 108.85141 * 0.02562 * 18 17 16 21 21 C 1.46501 * 124.84795 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.47077 * 89.97523 * 21 20 18 23 23 C 1.34656 * 110.29991 * 359.72639 * 20 18 17 24 24 C 1.50699 * 125.79877 * 180.30431 * 23 20 18 25 25 H 1.08999 * 109.46999 * 59.99621 * 1 2 3 26 26 H 1.09004 * 109.47039 * 300.00037 * 1 2 3 27 27 H 1.08997 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46999 * 120.00379 * 2 1 3 29 29 H 1.09004 * 109.47039 * 239.99963 * 2 1 3 30 30 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 32 32 H 1.08000 * 126.83842 * 0.03618 * 17 16 14 33 33 H 1.08997 * 109.46856 * 89.97839 * 19 18 17 34 34 H 1.08997 * 109.47168 * 209.97851 * 19 18 17 35 35 H 1.09000 * 109.47216 * 329.98136 * 19 18 17 36 36 H 1.08995 * 109.47482 * 209.97378 * 21 20 18 37 37 H 1.09005 * 109.47225 * 329.98145 * 21 20 18 38 38 H 1.09001 * 109.47679 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.47048 * 300.00405 * 22 21 20 40 40 H 1.08993 * 109.47138 * 59.99881 * 22 21 20 41 41 H 1.09000 * 109.47470 * 270.18735 * 24 23 20 42 42 H 1.08997 * 109.47949 * 30.18997 * 24 23 20 43 43 H 1.09008 * 109.47139 * 150.19112 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4447 -0.1409 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5891 -1.3855 8 7 5.4206 1.4962 -1.5215 9 14 3.0421 1.9170 -2.8784 10 1 2.7757 3.3739 -2.9863 11 1 3.7404 1.4495 -4.1028 12 1 1.7564 1.1882 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6589 1.3901 15 8 -0.3365 2.6301 0.4636 16 6 0.0756 3.3117 2.6555 17 6 0.8998 3.4340 3.8628 18 6 0.1555 4.1010 4.7629 19 6 0.5870 4.4646 6.1602 20 7 -1.0541 4.3946 4.2039 21 6 -2.1351 5.1169 4.8792 22 6 -1.9817 6.6179 4.6256 23 6 -1.1098 3.9313 2.9408 24 6 -2.2805 4.0697 2.0020 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 5.8253 1.5975 -2.3973 31 1 2.2948 2.1150 1.9978 32 1 1.9047 3.0632 4.0011 33 1 1.0684 5.4425 6.1489 34 1 -0.2852 4.4965 6.8131 35 1 1.2901 3.7179 6.5293 36 1 -3.0958 4.7792 4.4908 37 1 -2.0878 4.9228 5.9508 38 1 -2.7857 7.1555 5.1284 39 1 -1.0208 6.9557 5.0140 40 1 -2.0289 6.8121 3.5541 41 1 -2.9452 3.2140 2.1214 42 1 -2.8238 4.9864 2.2311 43 1 -1.9194 4.1085 0.9742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183848477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:47 Heat of formation + Delta-G solvation = -11.296159 kcal Electronic energy + Delta-G solvation = -22290.148641 eV Core-core repulsion = 19142.447645 eV Total energy + Delta-G solvation = -3147.700996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33889 -38.55496 -35.00922 -34.14099 -32.55705 -32.18683 -31.32027 -29.34246 -28.98575 -27.34131 -24.72963 -23.74678 -22.66089 -21.58695 -20.04924 -19.22438 -18.48798 -17.07992 -16.37685 -15.54486 -15.41064 -15.10132 -14.67380 -14.19672 -13.96572 -13.52804 -13.29160 -13.23823 -13.07015 -12.87194 -12.68662 -12.45650 -12.30395 -12.12723 -12.07009 -11.78767 -11.67832 -11.57013 -11.50687 -11.18084 -10.85275 -10.55528 -10.52514 -9.86123 -9.74312 -9.08948 -8.88653 -8.59787 -8.39303 -7.88596 -7.63417 -6.14327 -4.16648 2.12580 2.60367 2.83767 3.34305 3.41137 3.49833 4.28813 4.35281 4.41644 4.48993 4.67552 4.73657 4.88563 4.97540 5.17714 5.24193 5.28475 5.29702 5.39762 5.45966 5.66711 5.73259 5.77718 5.82025 5.90990 6.11464 6.19100 6.20158 6.22120 6.37531 6.52172 6.80073 6.91117 7.05166 7.13696 7.16045 7.28654 7.41091 7.43855 7.54060 7.77175 8.31325 8.81068 8.89393 9.29696 9.49990 10.97663 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.004635 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.876902 B = 6040.123574 C = 6375.876409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.238 3.762 4 H 0.050 0.950 5 C -0.527 4.527 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.892 5.892 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.258 1.258 13 N -0.699 5.699 14 C 0.577 3.423 15 O -0.565 6.565 16 C -0.220 4.220 17 C -0.163 4.163 18 C 0.002 3.998 19 C -0.079 4.079 20 N -0.442 5.442 21 C 0.096 3.904 22 C -0.170 4.170 23 C 0.093 3.907 24 C -0.089 4.089 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.027 0.973 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.266 0.734 31 H 0.392 0.608 32 H 0.144 0.856 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.525 7.515 15.013 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.136 3.864 4 H 0.068 0.932 5 C -0.565 4.565 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.529 5.529 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.183 1.183 13 N -0.346 5.346 14 C 0.364 3.636 15 O -0.448 6.448 16 C -0.229 4.229 17 C -0.187 4.187 18 C -0.105 4.105 19 C -0.137 4.137 20 N -0.120 5.120 21 C -0.026 4.026 22 C -0.228 4.228 23 C -0.023 4.023 24 C -0.146 4.146 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.225 0.775 32 H 0.162 0.838 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.128 7.649 14.386 22.233 hybrid contribution -0.004 0.212 -0.381 0.436 sum -15.131 7.861 14.005 22.065 Atomic orbital electron populations 1.21897 0.97430 0.98578 1.02192 1.22060 0.93717 0.99582 1.00979 1.19116 0.95261 0.89003 0.83058 0.93227 1.21050 0.88880 1.51227 0.95372 0.90441 1.24929 0.94845 0.93785 0.98772 1.69896 1.09764 1.48869 1.24341 0.86902 0.81336 0.79606 0.82153 1.19944 1.21374 1.18279 1.46348 1.14470 1.55926 1.17865 1.17362 0.82369 0.78088 0.85745 1.90664 1.51339 1.61440 1.41324 1.20449 0.95517 1.10847 0.96121 1.21853 0.99640 1.04660 0.92577 1.20093 0.86597 1.06799 0.97046 1.20275 1.01160 1.02213 0.90043 1.43551 1.12802 1.44567 1.11064 1.21788 0.89932 0.92533 0.98300 1.22169 1.02909 0.94537 1.03167 1.20212 0.97442 0.99515 0.85088 1.20512 0.93631 1.00921 0.99579 0.93174 0.92888 0.95395 0.93143 0.92319 0.92392 0.77505 0.83824 0.91354 0.92247 0.90212 0.89349 0.89357 0.90914 0.91793 0.91700 0.91024 0.92594 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.53 37.16 0.32 -2.71 16 2 C -0.12 -2.83 5.59 -26.73 -0.15 -2.98 16 3 C 0.24 5.90 1.89 -69.08 -0.13 5.77 16 4 H 0.05 1.34 4.73 -51.93 -0.25 1.09 16 5 C -0.53 -14.63 9.05 -34.44 -0.31 -14.95 16 6 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 7 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 8 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 9 Si 0.87 22.20 26.99 -169.99 -4.59 17.61 16 10 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.47 6.82 56.52 0.39 -6.08 16 13 N -0.70 -15.28 5.02 -56.06 -0.28 -15.57 16 14 C 0.58 12.20 6.41 -12.59 -0.08 12.12 16 15 O -0.57 -13.10 11.95 5.26 0.06 -13.03 16 16 C -0.22 -3.91 6.29 -103.35 -0.65 -4.56 16 17 C -0.16 -2.48 10.45 -37.49 -0.39 -2.87 16 18 C 0.00 0.02 6.85 -81.86 -0.56 -0.54 16 19 C -0.08 -0.69 10.06 36.00 0.36 -0.32 16 20 N -0.44 -5.43 2.69 -107.96 -0.29 -5.72 16 21 C 0.10 0.77 6.08 -4.04 -0.02 0.75 16 22 C -0.17 -1.22 10.24 37.16 0.38 -0.84 16 23 C 0.09 1.41 6.89 -81.89 -0.56 0.85 16 24 C -0.09 -1.19 9.26 36.00 0.33 -0.86 16 25 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 26 H 0.05 1.13 5.63 -51.93 -0.29 0.84 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.39 7.85 7.72 -40.82 -0.31 7.53 16 32 H 0.14 2.01 7.70 -52.49 -0.40 1.60 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.41 6.94 -51.93 -0.36 0.05 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.62 7.51 -51.93 -0.39 0.23 16 37 H 0.09 0.55 6.90 -51.93 -0.36 0.20 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.58 7.56 -51.93 -0.39 0.19 16 43 H 0.10 1.64 6.47 -51.92 -0.34 1.31 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -32.94 343.33 -7.60 -40.54 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.88 Total: 6.01 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.57 Total: -8.93 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.20 Total: -47.36 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.06 Total: -13.03 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.59 Total: 17.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.94 -7.60 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183848477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.241 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds