Wall clock time and date at job start Tue Mar 31 2020 00:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69360 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69117 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69381 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21624 * 119.99829 * 0.02562 * 14 13 3 16 16 C 1.47260 * 119.99946 * 179.97438 * 14 13 3 17 17 C 1.46689 * 126.94057 * 0.02701 * 16 14 13 18 18 C 1.34495 * 106.33267 * 179.97438 * 17 16 14 19 19 C 1.50697 * 125.57397 * 180.02562 * 18 17 16 20 20 N 1.36446 * 108.85141 * 0.02562 * 18 17 16 21 21 C 1.46501 * 124.84795 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.47077 * 89.97523 * 21 20 18 23 23 C 1.34656 * 110.29991 * 359.72639 * 20 18 17 24 24 C 1.50699 * 125.79877 * 180.30431 * 23 20 18 25 25 H 1.08999 * 109.46999 * 59.99621 * 1 2 3 26 26 H 1.09004 * 109.47039 * 300.00037 * 1 2 3 27 27 H 1.08997 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46999 * 120.00379 * 2 1 3 29 29 H 1.09004 * 109.47039 * 239.99963 * 2 1 3 30 30 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 32 32 H 1.08000 * 126.83842 * 0.03618 * 17 16 14 33 33 H 1.08997 * 109.46856 * 89.97839 * 19 18 17 34 34 H 1.08997 * 109.47168 * 209.97851 * 19 18 17 35 35 H 1.09000 * 109.47216 * 329.98136 * 19 18 17 36 36 H 1.08995 * 109.47482 * 209.97378 * 21 20 18 37 37 H 1.09005 * 109.47225 * 329.98145 * 21 20 18 38 38 H 1.09001 * 109.47679 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.47048 * 300.00405 * 22 21 20 40 40 H 1.08993 * 109.47138 * 59.99881 * 22 21 20 41 41 H 1.09000 * 109.47470 * 270.18735 * 24 23 20 42 42 H 1.08997 * 109.47949 * 30.18997 * 24 23 20 43 43 H 1.09008 * 109.47139 * 150.19112 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4447 -0.1409 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5891 -1.3855 8 7 5.4206 1.4962 -1.5215 9 14 3.0421 1.9170 -2.8784 10 1 2.7757 3.3739 -2.9863 11 1 3.7404 1.4495 -4.1028 12 1 1.7564 1.1882 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6589 1.3901 15 8 -0.3365 2.6301 0.4636 16 6 0.0756 3.3117 2.6555 17 6 0.8998 3.4340 3.8628 18 6 0.1555 4.1010 4.7629 19 6 0.5870 4.4646 6.1602 20 7 -1.0541 4.3946 4.2039 21 6 -2.1351 5.1169 4.8792 22 6 -1.9817 6.6179 4.6256 23 6 -1.1098 3.9313 2.9408 24 6 -2.2805 4.0697 2.0020 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 5.8253 1.5975 -2.3973 31 1 2.2948 2.1150 1.9978 32 1 1.9047 3.0632 4.0011 33 1 1.0684 5.4425 6.1489 34 1 -0.2852 4.4965 6.8131 35 1 1.2901 3.7179 6.5293 36 1 -3.0958 4.7792 4.4908 37 1 -2.0878 4.9228 5.9508 38 1 -2.7857 7.1555 5.1284 39 1 -1.0208 6.9557 5.0140 40 1 -2.0289 6.8121 3.5541 41 1 -2.9452 3.2140 2.1214 42 1 -2.8238 4.9864 2.2311 43 1 -1.9194 4.1085 0.9742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183848477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:47 Heat of formation + Delta-G solvation = -31.941274 kcal Electronic energy + Delta-G solvation = -22291.043880 eV Core-core repulsion = 19142.447645 eV Total energy + Delta-G solvation = -3148.596236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.40502 -40.22886 -36.85669 -35.00180 -34.34531 -33.52362 -33.02642 -30.33789 -30.00249 -29.18623 -25.94910 -24.80901 -24.30588 -22.84817 -21.59555 -20.90159 -19.74612 -18.84686 -17.70806 -17.22598 -16.67913 -16.34058 -15.98797 -15.82569 -15.39845 -14.78388 -14.74519 -14.34440 -14.10382 -13.97903 -13.81282 -13.73684 -13.72261 -13.57927 -13.41606 -13.13394 -12.91341 -12.85024 -12.54957 -12.44163 -12.31682 -12.22300 -12.06438 -11.85180 -11.65421 -11.18283 -10.82168 -10.55109 -9.69418 -9.39588 -8.85883 -8.37887 -6.43072 0.87397 1.29583 1.32852 1.45387 1.49401 1.90479 2.28481 2.71304 2.78369 3.10220 3.81779 3.83050 3.95278 4.13076 4.21403 4.32427 4.36837 4.38300 4.44620 4.53470 4.58279 4.67784 4.72144 4.79360 4.83920 4.87446 4.89942 5.01385 5.07207 5.12576 5.16257 5.26501 5.27647 5.31269 5.42146 5.45861 5.58777 5.87917 5.90173 6.15273 6.24676 6.46218 6.61147 7.08941 7.23376 7.65745 8.77511 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.004635 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.876902 B = 6040.123574 C = 6375.876409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C 0.244 3.756 4 H 0.029 0.971 5 C -0.527 4.527 6 H 0.052 0.948 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.254 1.254 13 N -0.704 5.704 14 C 0.574 3.426 15 O -0.592 6.592 16 C -0.265 4.265 17 C -0.193 4.193 18 C 0.018 3.982 19 C -0.078 4.078 20 N -0.433 5.433 21 C 0.086 3.914 22 C -0.166 4.166 23 C 0.094 3.906 24 C -0.085 4.085 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.270 0.730 31 H 0.398 0.602 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.933 8.485 17.093 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C 0.140 3.860 4 H 0.047 0.953 5 C -0.565 4.565 6 H 0.071 0.929 7 C -0.166 4.166 8 N -0.570 5.570 9 Si 0.752 3.248 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.178 1.178 13 N -0.351 5.351 14 C 0.365 3.635 15 O -0.476 6.476 16 C -0.274 4.274 17 C -0.216 4.216 18 C -0.091 4.091 19 C -0.135 4.135 20 N -0.110 5.110 21 C -0.033 4.033 22 C -0.224 4.224 23 C -0.023 4.023 24 C -0.142 4.142 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.232 0.768 32 H 0.162 0.838 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.551 8.632 16.506 25.593 hybrid contribution 0.704 -0.022 -0.872 1.121 sum -16.847 8.610 15.634 24.543 Atomic orbital electron populations 1.21741 0.95757 1.00116 1.01176 1.21971 0.95120 0.98030 1.00978 1.18874 0.93092 0.90214 0.83796 0.95286 1.21235 0.90400 1.50339 0.94527 0.92949 1.25591 0.95804 0.93890 1.01355 1.69989 1.11216 1.50565 1.25232 0.86047 0.80019 0.79194 0.79570 1.20224 1.20039 1.17839 1.46146 1.15369 1.56544 1.17063 1.17828 0.81460 0.77429 0.86804 1.90632 1.51866 1.62441 1.42641 1.20315 0.97898 1.13520 0.95702 1.21976 1.00268 1.06759 0.92645 1.20662 0.85980 1.04335 0.98096 1.20418 1.02488 1.02942 0.87655 1.43872 1.13633 1.43476 1.10057 1.22225 0.89019 0.92564 0.99518 1.22150 1.03758 0.94049 1.02413 1.20395 0.96925 0.98526 0.86481 1.20469 0.93326 1.02938 0.97460 0.94606 0.93453 0.92470 0.92405 0.93008 0.92059 0.76776 0.83791 0.90166 0.89693 0.89478 0.87890 0.86671 0.88097 0.92348 0.93307 0.90186 0.89333 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.53 71.98 0.61 -4.82 16 2 C -0.12 -5.58 5.59 30.59 0.17 -5.41 16 3 C 0.24 12.37 1.89 44.24 0.08 12.45 16 4 H 0.03 1.60 4.73 -2.39 -0.01 1.59 16 5 C -0.53 -30.15 9.05 25.60 0.23 -29.92 16 6 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 7 C 0.03 1.98 5.47 84.65 0.46 2.44 16 8 N -0.93 -57.34 13.96 21.45 0.30 -57.04 16 9 Si 0.93 46.58 26.99 68.60 1.85 48.43 16 10 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.25 -12.51 6.82 99.48 0.68 -11.83 16 13 N -0.70 -31.75 5.02 -449.53 -2.26 -34.01 16 14 C 0.57 24.96 6.41 86.61 0.56 25.52 16 15 O -0.59 -28.12 11.95 -4.11 -0.05 -28.17 16 16 C -0.26 -9.51 6.29 -19.04 -0.12 -9.62 16 17 C -0.19 -5.81 10.45 23.62 0.25 -5.57 16 18 C 0.02 0.41 6.85 40.98 0.28 0.69 16 19 C -0.08 -1.07 10.06 71.24 0.72 -0.35 16 20 N -0.43 -9.54 2.69 -495.48 -1.33 -10.87 16 21 C 0.09 1.04 6.08 86.38 0.53 1.56 16 22 C -0.17 -1.77 10.24 71.98 0.74 -1.03 16 23 C 0.09 2.77 6.89 41.78 0.29 3.06 16 24 C -0.08 -2.16 9.26 71.24 0.66 -1.50 16 25 H 0.03 1.57 7.88 -2.39 -0.02 1.55 16 26 H 0.05 2.01 5.63 -2.38 -0.01 2.00 16 27 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 28 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 29 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.40 16.66 7.72 -92.71 -0.72 15.95 16 32 H 0.14 4.11 7.70 -2.91 -0.02 4.09 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.76 6.94 -2.39 -0.02 0.74 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 0.99 7.51 -2.39 -0.02 0.97 16 37 H 0.12 0.83 6.90 -2.38 -0.02 0.81 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.69 8.11 -2.39 -0.02 0.67 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.09 1.62 7.56 -2.39 -0.02 1.60 16 43 H 0.07 2.34 6.47 -2.38 -0.02 2.32 16 Total: -1.00 -73.58 343.33 4.22 -69.36 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.26 Total: 24.81 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 5.45 Total: -12.51 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.29 Total: -101.92 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.05 Total: -28.17 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.85 Total: 48.43 kcal Total: -73.58 4.22 -69.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183848477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.416 kcal (2) G-P(sol) polarization free energy of solvation -73.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds