Wall clock time and date at job start Tue Mar 31 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46903 * 109.47009 * 152.17649 * 3 2 1 5 5 C 1.46848 * 111.00054 * 169.99569 * 4 3 2 6 6 C 1.53036 * 109.52306 * 185.83992 * 5 4 3 7 7 C 1.53113 * 109.27957 * 300.82309 * 6 5 4 8 8 C 1.50706 * 109.52461 * 177.55959 * 7 6 5 9 9 O 1.21281 * 119.99699 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00080 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47194 * 34.71875 * 11 10 8 13 13 C 1.50700 * 109.47204 * 154.72097 * 11 10 8 14 14 H 1.07995 * 120.00109 * 359.97438 * 13 11 10 15 15 C 1.37873 * 119.99681 * 180.02562 * 13 11 10 16 16 N 1.31521 * 120.00364 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99840 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47130 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47127 * 119.99459 * 17 15 13 20 20 H 1.48498 * 109.47285 * 239.99667 * 17 15 13 21 21 C 1.52997 * 109.46691 * 274.72265 * 11 10 8 22 22 C 1.53002 * 109.47391 * 65.00031 * 21 11 10 23 23 C 1.53116 * 109.16085 * 57.65577 * 7 6 5 24 24 C 1.46846 * 111.00002 * 294.21112 * 4 3 2 25 25 H 4.40883 * 5.52056 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.47556 * 32.17948 * 3 2 1 27 27 H 1.09000 * 109.47250 * 272.17670 * 3 2 1 28 28 H 1.09001 * 109.46017 * 65.82929 * 5 4 3 29 29 H 1.08994 * 109.45955 * 305.85681 * 5 4 3 30 30 H 1.09002 * 109.50390 * 180.88321 * 6 5 4 31 31 H 1.08998 * 109.50581 * 60.76655 * 6 5 4 32 32 H 1.08998 * 109.52998 * 297.68635 * 7 6 5 33 33 H 0.97005 * 120.00161 * 359.72088 * 10 8 7 34 34 H 0.96994 * 119.99652 * 180.02562 * 16 15 13 35 35 H 1.09007 * 109.46946 * 184.99743 * 21 11 10 36 36 H 1.09000 * 109.47256 * 304.99265 * 21 11 10 37 37 H 1.08997 * 109.46969 * 59.99876 * 22 21 11 38 38 H 1.09005 * 109.46969 * 180.02562 * 22 21 11 39 39 H 1.08997 * 109.46886 * 299.99799 * 22 21 11 40 40 H 1.09004 * 109.50815 * 62.28724 * 23 7 6 41 41 H 1.09003 * 109.50623 * 182.40240 * 23 7 6 42 42 H 1.09001 * 109.46051 * 294.17060 * 24 4 3 43 43 H 1.08999 * 109.46238 * 54.15586 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.2258 -0.6465 5 6 4.5833 1.3784 -0.4574 6 6 5.0321 2.7311 -1.0150 7 6 4.6823 2.8054 -2.5037 8 6 5.0676 4.1583 -3.0447 9 8 5.5721 4.9829 -2.3124 10 7 4.8506 4.4520 -4.3420 11 6 5.2257 5.7669 -4.8680 12 1 6.1316 6.1125 -4.3701 13 6 5.4760 5.6622 -6.3504 14 1 5.3671 4.7113 -6.8506 15 6 5.8452 6.7802 -7.0678 16 7 5.9783 7.9382 -6.4586 17 14 6.1548 6.6506 -8.9054 18 1 5.9385 5.2492 -9.3462 19 1 5.2187 7.5478 -9.6296 20 1 7.5536 7.0519 -9.2013 21 6 4.0916 6.7612 -4.6112 22 6 3.9207 6.9619 -3.1041 23 6 3.1755 2.5953 -2.6770 24 6 2.7804 1.2466 -2.0713 25 1 -1.0501 -0.0003 0.0004 26 1 3.0098 -0.8690 -0.5473 27 1 3.0094 -0.0382 1.0269 28 1 5.1045 0.5781 -0.9828 29 1 4.8180 1.3279 0.6058 30 1 6.1096 2.8374 -0.8886 31 1 4.5217 3.5324 -0.4807 32 1 5.2237 2.0293 -3.0445 33 1 4.4501 3.7912 -4.9286 34 1 6.2377 8.7247 -6.9634 35 1 4.3321 7.7156 -5.0799 36 1 3.1650 6.3725 -5.0335 37 1 4.8474 7.3507 -2.6820 38 1 3.1124 7.6700 -2.9212 39 1 3.6802 6.0076 -2.6355 40 1 2.6357 3.3945 -2.1689 41 1 2.9264 2.6047 -3.7381 42 1 3.3101 0.4469 -2.5891 43 1 1.7058 1.1005 -2.1802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183937047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:59 Heat of formation + Delta-G solvation = -13.779208 kcal Electronic energy + Delta-G solvation = -22074.464854 eV Core-core repulsion = 18926.656184 eV Total energy + Delta-G solvation = -3147.808669 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17600 -39.47784 -36.95866 -35.44897 -34.28073 -33.25854 -32.45602 -31.73069 -29.15464 -28.02070 -25.30392 -24.45146 -24.04722 -22.12206 -21.17274 -20.57217 -19.00340 -18.87351 -17.48241 -17.29423 -16.80501 -16.31731 -16.04345 -15.96406 -15.63639 -14.88192 -14.71085 -14.63390 -14.52744 -13.95410 -13.70430 -13.58834 -13.33309 -13.19032 -13.00052 -12.81208 -12.69380 -12.44877 -12.14939 -12.11869 -12.01208 -11.74541 -11.57439 -11.45092 -11.26526 -11.02384 -11.00137 -10.58133 -10.37986 -9.57437 -9.28822 -8.15380 -6.32716 1.43824 1.45037 1.56725 1.79903 1.92702 1.97552 2.37192 2.70895 3.11522 3.13949 3.56272 3.72883 3.84830 3.95863 4.24403 4.33099 4.40718 4.45761 4.49417 4.56467 4.57417 4.61167 4.70023 4.76066 4.80674 4.91450 4.97037 5.06872 5.12907 5.16115 5.23848 5.26632 5.41538 5.45176 5.57587 5.66874 5.81167 5.95723 6.07341 6.11752 6.18830 6.76416 6.76596 7.05823 7.35160 7.65965 8.90095 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.003679 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.843523 B = 7608.824913 C = 7788.209576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.211 4.211 3 C 0.162 3.838 4 N -0.554 5.554 5 C 0.066 3.934 6 C -0.091 4.091 7 C -0.099 4.099 8 C 0.501 3.499 9 O -0.589 6.589 10 N -0.706 5.706 11 C 0.278 3.722 12 H -0.004 1.004 13 C -0.546 4.546 14 H 0.071 0.929 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.970 3.030 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.285 1.285 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.100 4.100 24 C 0.065 3.935 25 H 0.241 0.759 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.401 0.599 34 H 0.264 0.736 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 -17.945 9.120 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.211 4.211 3 C 0.036 3.964 4 N -0.280 5.280 5 C -0.061 4.061 6 C -0.129 4.129 7 C -0.120 4.120 8 C 0.288 3.712 9 O -0.471 6.471 10 N -0.354 5.354 11 C 0.175 3.825 12 H 0.014 0.986 13 C -0.584 4.584 14 H 0.089 0.911 15 C -0.186 4.186 16 N -0.554 5.554 17 Si 0.795 3.205 18 H -0.184 1.184 19 H -0.205 1.205 20 H -0.211 1.211 21 C -0.159 4.159 22 C -0.179 4.179 23 C -0.138 4.138 24 C -0.062 4.062 25 H 0.257 0.743 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.236 0.764 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.773 -16.768 9.807 20.923 hybrid contribution 0.414 -0.174 -1.510 1.575 sum -7.360 -16.942 8.297 20.249 Atomic orbital electron populations 1.25661 0.96863 0.99209 1.00020 1.23364 0.95136 1.01365 1.01267 1.19076 0.84711 0.91306 1.01319 1.61830 1.14885 1.37170 1.14074 1.22077 0.86012 0.95883 1.02122 1.21313 1.00957 0.97771 0.92884 1.21395 0.98704 0.93567 0.98343 1.21207 0.77815 0.90055 0.82091 1.90642 1.46130 1.51677 1.58628 1.46278 1.61913 1.17383 1.09851 1.18326 0.92217 0.79550 0.92447 0.98644 1.21623 1.47724 0.95917 0.93183 0.91062 1.25783 0.94654 0.94760 1.03394 1.70064 1.47388 1.00347 1.37614 0.85331 0.77435 0.78674 0.79084 1.18373 1.20503 1.21091 1.21769 0.97875 1.01975 0.94245 1.21659 0.99060 0.99957 0.97232 1.21515 0.92639 0.98085 1.01576 1.22030 1.01107 0.95988 0.87099 0.74289 0.91006 0.87228 0.92772 0.88802 0.91365 0.92839 0.87170 0.76399 0.92669 0.91167 0.94140 0.95724 0.93797 0.93752 0.92710 0.89828 0.92918 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.28 19.25 74.32 1.43 -1.85 16 2 C -0.21 -3.93 12.34 31.12 0.38 -3.54 16 3 C 0.16 2.53 5.46 84.50 0.46 2.99 16 4 N -0.55 -10.86 4.63 -907.46 -4.21 -15.07 16 5 C 0.07 1.21 5.46 86.33 0.47 1.68 16 6 C -0.09 -2.35 4.68 30.64 0.14 -2.21 16 7 C -0.10 -2.68 2.59 -11.46 -0.03 -2.71 16 8 C 0.50 19.52 5.73 87.66 0.50 20.02 16 9 O -0.59 -28.09 13.14 -3.03 -0.04 -28.13 16 10 N -0.71 -28.89 4.92 -446.09 -2.20 -31.08 16 11 C 0.28 14.34 2.24 44.24 0.10 14.44 16 12 H 0.00 -0.27 7.57 -2.39 -0.02 -0.29 16 13 C -0.55 -28.91 8.73 25.60 0.22 -28.69 16 14 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 15 C 0.01 0.76 5.29 84.65 0.45 1.20 16 16 N -0.92 -52.74 11.30 21.45 0.24 -52.50 16 17 Si 0.97 42.11 29.54 68.60 2.03 44.13 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 22 C -0.12 -5.64 8.52 71.98 0.61 -5.03 16 23 C -0.10 -2.38 5.26 30.65 0.16 -2.22 16 24 C 0.07 1.27 5.30 86.33 0.46 1.72 16 25 H 0.24 2.25 7.80 -4.41 -0.03 2.22 16 26 H 0.07 0.90 8.12 -2.38 -0.02 0.88 16 27 H 0.11 1.39 7.99 -2.39 -0.02 1.37 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 1.44 8.01 -2.39 -0.02 1.42 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.66 8.04 -2.39 -0.02 1.64 16 32 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.40 13.93 8.04 -92.70 -0.74 13.18 16 34 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.07 3.93 5.95 -2.38 -0.01 3.92 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.02 1.22 7.85 -2.39 -0.02 1.20 16 38 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.04 1.98 5.67 -2.39 -0.01 1.97 16 40 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.08 1.82 7.67 -2.39 -0.02 1.80 16 42 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 1.52 7.11 -2.39 -0.02 1.50 16 Total: -1.00 -67.95 344.02 1.60 -66.35 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.24 Total: 26.33 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 5.53 Total: -10.03 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -6.16 Total: -98.65 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.04 Total: -28.13 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -67.95 1.60 -66.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.572 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds